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Dissertations / Theses on the topic 'Evolutionary systematics'

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1

Ezcurra, Martin D. "Systematics and evolutionary history of proterosuchian archosauriforms." Thesis, University of Birmingham, 2015. http://etheses.bham.ac.uk//id/eprint/6033/.

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The evolutionary history of archosauromorphs is of particular interest because it includes the origins of two of the best-known and most distinctive extant tetrapod groups: crocodylians and birds. In this thesis, the anatomy, taxonomy and systematics of the Permo-Triassic non-archosaur archosauromorphs are revised. A revision of the Permo-Triassic archosauromorph record indicates that only four Permian species are known and there are three valid proterosuchid species immediately after the Permo-Triassic boundary in South Africa. Analyses of cranial ontogenetic variation in \(Proterosuchus\) \(
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2

Castroviejo-Fisher, Santiago. "Species Limits, and Evolutionary History of Glassfrogs." Doctoral thesis, Uppsala universitet, Evolutionsbiologi, 2009. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-100923.

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Recognizing the mechanisms of speciation and the limits of species is essential to understand the origin of biodiversity and how to conserve it. The general aims of my investigations during my doctoral studies were two-fold: to study evolutionary patterns and processes, and to provide specific and superspecific taxonomic classifications that try to reflect evolutionary history. I have focused my research on anurans in their biodiversity hotspot, the American Tropics. I have used morphological, behavioral (mating calls), and genetic (DNA sequences) characters to study species boundaries between
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3

Betancur-R, Ricardo Armbruster Jonathan W. "Systematics and evolutionary history of sea catfishes (Siluriformes Ariidae) /." Auburn, Ala, 2009. http://hdl.handle.net/10415/1669.

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4

Martin, Gavin Jon. "Advances in the Systematics and Evolutionary Understanding of Fireflies (Coleoptera: Lampyridae)." BYU ScholarsArchive, 2020. https://scholarsarchive.byu.edu/etd/8895.

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Fireflies are a cosmopolitan group of bioluminescent beetles classified in the family Lampyridae. The first catalogue of Lampyridae was published in 1907 and since that time, the classification and systematics of fireflies have been in flux. Several more recent catalogues and classification schemes have been published, but rarely have they taken phylogenetic history into account. Here I infer the first large scale anchored hybrid enrichment phylogeny for the fireflies and use this phylogeny as a backbone to inform classification. Several classification changes are made throughout the group wit
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5

Vilgalys, Rytas J. "Evolutionary genetics and systematics of fungi in the Collybia dryophila group." Diss., Virginia Polytechnic Institute and State University, 1985. http://hdl.handle.net/10919/49952.

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I have undertaken an evolutionary and systematic study of fungi in the <i>Collybia dryophila</i> group (Basidiomycetes: Tricholomataceae). Species in the <i>C. dryophila</i> group occur worldwide as primary litter decomposers, yet little is known about their systematics. In a previous study, the <i>C. dryophila</i> group in North America was shown to consist of four biological species, identifiable on the basis of mating compatibility and certain taxonomic features (Vilgalys, 1983). In this study, crosses made using isolates from over 80 individuals of the <i>C. dryophila</i> group from Europ
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6

Randle, Emma. "Heterostraci systematics, phylogenetics and macroevolution : investigating evolutionary patterns of extinct jawless vertebrates." Thesis, University of Manchester, 2017. https://www.research.manchester.ac.uk/portal/en/theses/heterostraci-systematics-phylogenetics-and-macroevolution-investigating-evolutionary-patterns-of-extinct-jawless-vertebrates(13982d14-613f-489e-9b77-a1a57876fa77).html.

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Heterostracans are extinct armoured jawless vertebrates and are hypothesized to be positioned as sister group to all other boney vertebrates - they are therefore fundamental to understanding early vertebrate evolution. Despite being taxonomically the largest clade of stem gnathostomes (jawed vertebrates), they lack the evolutionary framework required to further explore marcoevolutionary patterns and transitions. This thesis therefore aims to address one over arching theme: understanding the evolution and diversity of the Heterostraci and by extension, that of early vertebrates. This was first
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7

Robins, Cristina Marie. "Systematics and Phylogeny of the Fossil Galatheoidea (Anomura, Decapoda): Uncovering Their Evolutionary Path." Kent State University / OhioLINK, 2013. http://rave.ohiolink.edu/etdc/view?acc_num=kent1374885377.

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8

Henning, Jack. "Further studies with Melianthus L. : a molecular phylogeny, evolutionary patterns of diversification in the genus and pollinator syndromes." Master's thesis, University of Cape Town, 2003. http://hdl.handle.net/11427/6971.

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Bibliography: leaves 84-100.<br>A phylogeny was produced for the eight taxa comprising the largely South African genus Melianthus L. based on two plastid markers (trnL-F and psbA-trnH) and one nuclear marker (ITS). Topological comparisons with a tree based on an existing morphological data set revealed significant incongruence leading to a loss of resolution upon combination. Ultimately, the combined three-gene data tree was selected as the strongest phylogenetic estimate for Melianthus based on its better resolution and greater support levels. This tree confirms the monophyly of Melianthus wi
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9

Hall, Kathryn Ann. "The taxonomy, systematics and evolutionary biology of the Gyliauchenidae Fukui, 1929 (1918) (Platyhelminthes: Digenea) /." [St. Lucia, Qld.], 2003. http://www.library.uq.edu.au/pdfserve.php?image=thesisabs/absthe17993.pdf.

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10

Breinholt, Jesse W. "Testing Crayfish Evolutionary Hypotheses with Phylogenetic Methods." BYU ScholarsArchive, 2012. https://scholarsarchive.byu.edu/etd/3563.

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This dissertation focuses on increasing the understanding of the evolution processes that have contributed to the diversification of freshwater crayfish. Chapter one estimates the divergence time of the three crayfish families and tests the hypothesis that diversification is tied to the break-up of Pangaea, Gondwanna, and Laurasia. I find that the families of crayfish diverged prior to or in association with the break-up of the three super continents. Chapter two addresses the evolutionary history of the genus Cambarus, using molecular data to test hypotheses of relationships based on chela an
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Genio, Luciana De Melo Santos. "Systematics and evolutionary history of mytilids (Bivalvia) from chemosynthetic sites based on shell morphological characters." Thesis, University of Leeds, 2009. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.522947.

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12

Unwin, D. M. "The morphology, systematics and evolutionary history of pterosaurs from the Cretaceous Cambridge Greensand of England." Thesis, University of Reading, 1991. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.505670.

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13

Rios, Gonzalez Ruben. "Synalpheus shrimp from Carrie Bow Cay, Belize. Systematics, phylogenetics and biological observations (Crustacea: Decapoda: ; Alpheidae)." W&M ScholarWorks, 2003. https://scholarworks.wm.edu/etd/1539616826.

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Snapping shrimp in the family Alpheidae are remarkably abundant in coral reef ecosystems worldwide. The second most speciose genus, Synalpheus , includes species usually small and reclusive, and their general morphology is notably uniform, yet the number of species is staggeringly high, as is the intraspecific variability. These features have contributed to a poorly resolved taxonomic status, as evidenced both by recurring lumping and splitting of species and by lack of proper definition of several common species. I examined western Atlantic species of Synalpheus in the large and regionally do
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14

Cook, Lewis A. "Systematics and evolutionary paleoecology of crinoids from the St. Louis Limestone (Mississippian, Meramecian) of the Illinois Basin." Morgantown, W. Va. : [West Virginia University Libraries], 2010. http://hdl.handle.net/10450/11042.

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Thesis (Ph. D.)--West Virginia University, 2010.<br>Title from document title page. Document formatted into pages; contains x, 180 p. : ill. (some col.), maps (some col.). Vita. Includes abstract. Includes bibliographical references (p. 149-172).
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Boyd, Olivia Frances. "Phylogeography of Darlingtonea Kentuckensis and Molecular Systematics of Kentucky Cave Trechines." TopSCHOLAR®, 2015. http://digitalcommons.wku.edu/theses/1477.

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The monotypic cave carabid genus Darlingtonea is widely distributed along the eastern band of the Mississippian/Pennyroyal plateau in Kentucky and northern Tennessee. DNA sequence data from the mitochondrial gene cytochrome oxidase subunit I (COI) was collected from one to four individuals from 27 populations, and patterns of phylogeography and population structure were inferred from COI haplotypes. A hierarchical analysis of molecular variance found low nucleotide diversity within populations and statistically significant variation among geographically-defined groups tested based on two a pri
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Mullins, Irene M. "Evolutionary relationships in Oryza inferred from the gene that encodes the 10 kDa prolamin (seed storage protein) polypeptide." Thesis, Virginia Tech, 1997. http://hdl.handle.net/10919/9793.

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Cereals represent one of the most important food crops in the world. Rice (Oryza sativa) is one of the most commonly consumed cereal grains, and as a result, has considerable economic and agricultural importance, despite their potential as a source of genetic material. The phylogenetic relationships among rice and its wild species are not well understood. The objectives of this study are to evaluate the rate and type of molecular variation present in the gene that encodes the 10 kDa prolamin polypeptide in Oryza (Poaceae), and use this information in understanding the evolution of the Oryza ge
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O'Grady, Richard Terence. "Phylogenetic systematics and the evolutionary history of some intestinal flatworm parasites (Trematoda : Digenea: Plagiorchioidea) of Anurans." Thesis, University of British Columbia, 1987. http://hdl.handle.net/2429/27502.

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Historical structuralism is presented as a research program in evolutionary biology. It uses patterns of common ancestry as initial hypotheses in explaining evolutionary history. Such patterns, represented by phylogenetic trees, or cladograms, are postulates of persistent ancestral traits. These traits are evidence of historical constraints on evolutionary change. Patterns and processes consistent with a cladogram are considered to be consistent with an initial hypothesis of historical constraint. As an application of historical structuralism, a phylogenetic analysis is presented for members
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18

Tang, Ming-chak, and 鄧銘澤. "Phylogenetic utility of ribosomal and protein-coding genes in Sordariomycetes systematics and evolutionary relationships within theXylariaceae." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2007. http://hub.hku.hk/bib/B38307042.

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19

Di, Nicola Alessandro. "Evolutionary theory and normative realism in epistemology." Thesis, University of Oxford, 2015. http://ora.ox.ac.uk/objects/uuid:cf5de343-77b1-461f-9940-eeba1dd8b76b.

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In this thesis I discuss one way in which evolutionary theory has been brought to bear on the evaluation of competing meta-normative views in epistemology. More specifically, I investigate whether normative realism in epistemology (epistemic realism) is compatible with the view that we are justified in holding many of the epistemic beliefs we hold, on the assumption that those beliefs can be explained in evolutionary terms. In Part I I discuss normativity in epistemology and meta-epistemology. I begin by drawing attention to the fact that there are very different ways of understanding which co
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20

Wright, David F. "Phylogenetic Paleobiology: Phenotypic Diversification and Evolutionary Radiation in Paleozoic Crinoids." The Ohio State University, 2016. http://rave.ohiolink.edu/etdc/view?acc_num=osu1480441163862439.

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Tang, Ming-chak. "Phylogenetic utility of ribosomal and protein-coding genes in Sordariomycetes systematics and evolutionary relationships within the Xylariaceae." Click to view the E-thesis via HKUTO, 2007. http://sunzi.lib.hku.hk/hkuto/record/B38307042.

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22

Chestnut, Alex J. "Using MORPHOMETRICS, Phylogenetic Systematics and Parsimony Analysis to Gain Insight into the Evolutionary Affinities of the Calymenidae Trilobita." Wright State University / OhioLINK, 2009. http://rave.ohiolink.edu/etdc/view?acc_num=wright1239724101.

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23

Territo, Gregory. "Biogeography and systematics of the Nerodia clarkii/Nerodia fasciata clade in Florida." Master's thesis, University of Central Florida, 2013. http://digital.library.ucf.edu/cdm/ref/collection/ETD/id/5713.

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Biogeography provides a window into the evolutionary history of populations, and helps explain the diversity and distribution of life through time. Viewed from a systematic perspective, biogeographic studies generate convincing arguments to explain the relationships among organisms and categorize them into useful taxonomies. When taxonomies do not reflect evolutionary histories, inaccurate representations of biodiversity confound future studies and conservation efforts. Two thamnophiine snakes, Nerodia clarkii and Nerodia fasciata, harbor unique morphological and ecological adaptations that
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Fenwick, Allyson. "Beyond building a tree: Phylogeny of pitvipers and exploration of evolutionary patterns." Doctoral diss., University of Central Florida, 2012. http://digital.library.ucf.edu/cdm/ref/collection/ETD/id/5205.

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As generic and higher-scale evolutionary relationships are increasingly well understood, systematists move research in two directions: 1) understanding species-level relationships with dense taxon sampling, and 2) evaluating evolutionary patterns using phylogeny. In this study I address both foci of systematic research using pitvipers, subfamily Crotalinae. For direction one, I evaluate the relationships of 96% of pitvipers by combining independent sets of molecular and phenotypic data. I find the inclusion of species with low numbers of informative characters (i.e. less than 100) negative
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25

Clark, John R. "SPOROPHYTE DEVELOPMENT IN THE MOSS ECCREMIDIUM FLORIDANUM CRUM (DITRICHACEAE, MUSCI)." University of Cincinnati / OhioLINK, 2001. http://rave.ohiolink.edu/etdc/view?acc_num=ucin976636341.

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26

Tang, Chin-cheung, and 鄧展翔. "Systematics and phylogenetics of goniothalamus (annonaceae) : a study of putative rapid, recent evolutionary radiation in a species-rich palaeotropical genus." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2014. http://hdl.handle.net/10722/202378.

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Goniothalamus is one of the largest genera in the pantropical angiosperm family Annonaceae. It includes c. 130 species of trees, distributed in tropical lowland and submontane forests in tropical Asia, Australia and Melanesia. Previous studies have indicated that Goniothalamus shows a significantly higher diversification rate in comparison to closely related taxa and that its species diversity is the result of a relatively recent radiation. The phylogenetic framework necessary for testing this hypothesis, including the investigation of potential intrinsic and environmental correlates of this p
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27

Clarke, John. "Evolutionary patterns derived from 150 million years of morphological and functional evolution in neopterygian fishes." Thesis, University of Oxford, 2015. http://ora.ox.ac.uk/objects/uuid:8755cbeb-756b-420f-bf92-ab835cb98f58.

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Neopterygian fishes represent over half of vertebrate richness in the Recent and display staggering phenotypic variety, yet little is known about the first 150 million years of their evolution. Furthermore, neopterygian richness and disparity is highly unevenly partitioned between teleost fishes, with ~29,000 species expressing a plethora of phenotypes, and holostean fishes, with 8 species and just two morphological styles. Fossil phenotypes have the unique ability to illuminate the assembly of neopterygian disparity, and can reveal the pattern by which the uneven partitioning of disparity aro
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Villanueva, Chelsea Denise. "Molecular and Evolutionary Analysis of Cyanobacterial Taxonomic Methods." UNF Digital Commons, 2018. https://digitalcommons.unf.edu/etd/810.

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Cyanobacteria are a group of photo-oxygenic bacteria found in nearly every ecosystem, but much cyanobacterial diversity, in various habitats, has yet to be explored. Cyanobacteria are often conspicuous components of photosynthetic flora, providing significant carbon and nitrogen inputs to surrounding systems. As possible primary colonizers of stone substrates not native to this region, cyanobacteria isolated from headstones may provide biogeographically informative data. An exploratory study of lichen-dominated microbial consortia, growing on headstones, was conducted to isolate and identify n
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Burnham, Quinton. "Systematics and biogeography of the Australian burrowing freshwater crayfish genus Engaewa Riekk (Decapoda: Parastacidae)." Thesis, Edith Cowan University, Research Online, Perth, Western Australia, 2014. https://ro.ecu.edu.au/theses/1278.

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The overall aim of this study was to explore the systematics and biogeographic patterns of the freshwater crayfish genus Engaewa Riek, a strongly burrowing freshwater crayfish restricted to the coastal corner of south-western Australia (SWA). The genus Engaewa is a Gondwanan relict with great potential as a marker of historical processes, due to its high habitat specificity and low dispersal ability. This study comprises an extensive taxonomic and phylogenetic revision of the genus Engaewa (using both molecular and morphological data), a detailed study of its distribution and uses the knowledg
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Lüddecke, Tim [Verfasser]. "How the integration of phylogenetics and venomics resolves persistent challenges in evolutionary systematics and toxinology – lessons from the spider kingdom / Tim Lüddecke." Gießen : Universitätsbibliothek, 2021. http://d-nb.info/1230476369/34.

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31

Coutinho, Cadidja. "ENSINANDO EVOLUÇÃO ATRAVÉS DE FILOGENIAS: CONCEPÇÕES DOS PROFESSORES E CONTRIBUIÇÃO DOS LIVROS DIDÁTICOS." Universidade Federal de Santa Maria, 2013. http://repositorio.ufsm.br/handle/1/6673.

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Coordenação de Aperfeiçoamento de Pessoal de Nível Superior<br>Since evolution is considered the unifying thread for the biological sciences, biology Since evolution is considered the unifying thread for the biological sciences, biology education should have an evolutionary perspective in its various contents. To promote a coherent teaching and learning in biology, especially in the field of systematics and taxonomy of living beings, it is necessary to understand the dynamics of life guided by the evolutionary process. A real possibility of evolutionary approach is the use of cladograms in tea
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Tjärnlund, Norén Lindy. "Effekten av predatorinducerade morfologiska förändringar hos Rana temporaria." Thesis, Umeå universitet, Institutionen för ekologi, miljö och geovetenskap, 2017. http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-164778.

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Phenotypic plasticity is the ability of an organism to express different phenotypes depending on the biotic or abiotic environment. In many cases, the response to the environment is beneficial to the individual and can therefore represent adaptive phenotypic plasticity. An example includes morphological and life-historical response to predators. Because there has been a weak interest in the effect of these morphological changes, and it often assumes, but rarely shown, that predator-induced changes are adaptive. I tested how different variables, such as maximum acceleration and velocity, were r
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Cole, Selina R. "Phylogeny, Diversification, and Extinction Selectivity in Camerate Crinoids." The Ohio State University, 2017. http://rave.ohiolink.edu/etdc/view?acc_num=osu1492594839778373.

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34

Mutanen, M. (Marko). "Genital variation in moths—evolutionary and systematic perspectives." Doctoral thesis, University of Oulu, 2006. http://urn.fi/urn:isbn:9514280849.

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Abstract genital characteristics have peculiar morphological patterns. They show great divergence between species. At the same time, they are assumed to vary little within species by taxonomists who frequently use genital features to delimit species. I studied moth (Lepidoptera) genital size and shape variation within and between species. I also tested hypotheses proposed to explain rapid genital diversification among species. Studies were carried out using traditional distance measurement morphometrics and modern geometric morphometrics. Several moth species were analyzed. d that genital st
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Spindler, Frederik. "The basal Sphenacodontia – systematic revision and evolutionary implications." Doctoral thesis, Technische Universitaet Bergakademie Freiberg Universitaetsbibliothek "Georgius Agricola", 2015. http://nbn-resolving.de/urn:nbn:de:bsz:105-qucosa-171748.

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The presented study comprises a complete morphological and phylotaxonomic revision of basal Sphenacodontia, designated as the paraphyletic ‘haptodontines’. Ianthodon from the Kasimovian is known from newly identified elements, including most of the skull and particular postcrania. This species is determined as the best model for the initial morphology of the Sphenacomorpha (Edaphosauridae and Sphenacodontia). Remarkably older sphenacodontian remains from the Moscovian indicate a derived, though fragmentarily known form, possibly basal Sphenacodontoidea. The genus Haptodus is conclusively revis
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Howard, Yvonne Margaret. "Towards evolutionary and systematic process modelling using components." Thesis, University of Southampton, 2004. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.423572.

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Muto, Nozomu. "Evolutionary and systematic studies of the Sebastes vulpes complex (Sebastidae)." Kyoto University, 2013. http://hdl.handle.net/2433/180369.

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Kyoto University (京都大学)<br>0048<br>新制・課程博士<br>博士(農学)<br>甲第17831号<br>農博第2016号<br>新制||農||1016(附属図書館)<br>学位論文||H25||N4788(農学部図書室)<br>30646<br>京都大学大学院農学研究科応用生物科学専攻<br>(主査)教授 中坊 徹次, 准教授 田川 正朋, 准教授 豊原 治彦<br>学位規則第4条第1項該当
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Dornburg, Alex. "Night of the Holocentrids| A Phylogenetic Perspective on the Evolutionary History of an Enigmatic Clade of Nocturnal Reef Fishes." Thesis, Yale University, 2014. http://pqdtopen.proquest.com/#viewpdf?dispub=3580668.

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<p> The integration of advances in computing technology with major innovations in sequence data collection and phylogenetic inference has revolutionized evolutionary biology in the 21<sup>st</sup> century. In particular, the continual development of both theory and software that allow for more flexibility in utilizing molecular clock methods has radically transformed our understanding of the mode and tempo of diversification across the Tree of Life. Over the course of five chapters, this dissertation explores methodological challenges to phylogenetic inference with the aim of better understand
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Bahceci, Erkin. "Evolving Aggregation Behaviors For Swarm Robotic Systems: A Systematic Case Study." Master's thesis, METU, 2005. http://etd.lib.metu.edu.tr/upload/12606315/index.pdf.

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Evolutionary methods are shown to be useful in developing behaviors in robotics. Interest in the use of evolution in swarm robotics is also on the rise. However, when one attempts to use artificial evolution to develop behaviors for a swarm robotic system, he is faced with decisions to be made regarding some parameters of fitness evaluations and of the genetic algorithm. In this thesis, aggregation behavior is chosen as a case, where performance and scalability of aggregation behaviors of perceptron controllers that are evolved for a simulated swarm robotic system are systematically studied wi
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Spindler, Frederik [Verfasser], Jörg [Akademischer Betreuer] Schneider, Jörg [Gutachter] Schneider, and Martin [Gutachter] Sander. "The basal Sphenacodontia – systematic revision and evolutionary implications / Frederik Spindler ; Gutachter: Jörg Schneider, Martin Sander ; Betreuer: Jörg Schneider." Freiberg : Technische Universitaet Bergakademie Freiberg Universitaetsbibliothek "Georgius Agricola", 2015. http://d-nb.info/1220837954/34.

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Cote-Hammarlof, Pamela. "Investigating Evolutionary Innovation in Yeast Heat Shock Protein 90." eScholarship@UMMS, 2020. https://escholarship.umassmed.edu/gsbs_diss/1103.

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The Heat Shock Protein 90 (Hsp90) is an essential and highly conserved chaperone that facilitates the maturation of a wide array of client proteins, including many kinases. These clients in turn regulate a wide array of cellular processes, such as signal transduction, and transcriptional reprogramming. As a result, the activity of Hsp90 has the potential to influence physiology, which in turn may influence the ability to adapt to new environments. Previous studies using a deep mutational scanning approach, (EMPIRIC) identified multiple substitutions within a 9 amino acid substrate-binding loop
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Sieger, Charlotte Sophie [Verfasser], Thomas [Gutachter] Hovestadt, Juliano [Gutachter] Sarmento-Cabral, and Marleen [Gutachter] Cobben. "Potential evolutionary responses to landscape heterogeneity and systematic environmental trends / Charlotte Sophie Sieger ; Gutachter: Thomas Hovestadt, Juliano Sarmento-Cabral, Marleen Cobben." Würzburg : Universität Würzburg, 2020. http://d-nb.info/1222910470/34.

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Lim, Dongwook. "A systematic approach to design for lifelong aircraft evolution." Diss., Atlanta, Ga. : Georgia Institute of Technology, 2009. http://hdl.handle.net/1853/28280.

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Thesis (M. S.)--Aerospace Engineering, Georgia Institute of Technology, 2009.<br>Committee Chair: Mavris, Dimitri; Committee Member: Bishop, Carlee; Committee Member: Costello, Mark; Committee Member: Nam, Taewoo; Committee Member: Schrage, Daniel.
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Ergun, Eser. "Rethinking The Architectural Design Process Through Its Computable Body Of Knowledge." Master's thesis, METU, 2008. http://etd.lib.metu.edu.tr/upload/12609577/index.pdf.

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This thesis assumes the architectural design process as a systematic study, in which knowledge is stored, organized and operated on by computational methods. From this perspective, the study explores the efforts for systemizing the architectural design process. Firstly, the focus is on the early approaches of systemizing design in the Design Methods Movement. The thesis identifies and evaluates the use of a number of critical concepts in this movement and in recent architecture practice, in order to see the development and transformation of design methods in terms of computing knowledge in a s
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Jiang, Li. "Systematic Experimental Determination of Functional Constraints on Proteins and Adaptive Potential of Mutations: A Dissertation." eScholarship@UMMS, 2016. https://escholarship.umassmed.edu/gsbs_diss/854.

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Sequence-function relationship is a fundamental question for many branches of modern biomedical research. It connects the primary sequence of proteins to the function of proteins and fitness of organisms, holding answers for critical questions such as functional consequences of mutations identified in whole genome sequencing and adaptive potential of fast evolving pathogenic viruses and microbes. Many different approaches have been developed to delineate the genotype-phenotype map for different proteins, but are generally limited by their throughput or precision. To systematically quantify the
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Jiang, Li. "Systematic Experimental Determination of Functional Constraints on Proteins and Adaptive Potential of Mutations: A Dissertation." eScholarship@UMMS, 2005. http://escholarship.umassmed.edu/gsbs_diss/854.

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Sequence-function relationship is a fundamental question for many branches of modern biomedical research. It connects the primary sequence of proteins to the function of proteins and fitness of organisms, holding answers for critical questions such as functional consequences of mutations identified in whole genome sequencing and adaptive potential of fast evolving pathogenic viruses and microbes. Many different approaches have been developed to delineate the genotype-phenotype map for different proteins, but are generally limited by their throughput or precision. To systematically quantify the
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47

Estes, Larry D. "Systematics of Gratiola (Plantaginaceae)." 2008. http://trace.tennessee.edu/utk_graddiss/381.

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Gratiola (Plantaginaceae tribe Gratioleae) is a genus of ca. 33 wetland-adapted herbaceous species found mostly in temperate or tropical-montane regions of the Americas, Eurasia, and Australasia. The only worldwide taxonomic treatment of Gratiola was published more than 160 years ago and only a few representatives of the genus have been included in published molecular phylogenetic studies. The overall aim of this investigation was to provide a modern systematic study of Gratiola by determining the phylogenetic placement of Gratiola within the Gratioleae using chloroplast DNA sequence data (Cha
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48

CHIA-HSIN, LIU, and 劉佳鑫. "Functions of Proteins as Evolutionary Variables in Prokaryote Systematics Analysis." Thesis, 2007. http://ndltd.ncl.edu.tw/handle/71442472602488113909.

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49

Folinsbee, Kaila. "Evolutionary History and Biogeography of Papionin Monkeys." Thesis, 2008. http://hdl.handle.net/1807/16755.

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Climate change has been invoked to explain patterns of speciation, extinction and biogeographic change over time, however it can be a difficult hypothesis to test empirically. One area of particular interest is climate change in the African Neogene, linked with the origin of hominins. A perfect model clade to test these hypotheses is the papionin monkeys, a diverse group (both extinct and extant), represented by an excellent fossil record. I describe new fossil papionin specimens from Coopers Cave, South Africa, and redescribe and discuss some previously known fossil material. This rich da
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Triche, Nina Elise. "Systematics, biogeography, and evolutionary history of fossil and extant penguins (Aves: Sphenisciformes)." Thesis, 2007. http://hdl.handle.net/2152/3781.

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The excellent penguin fossil record is temporally long, among the oldest of modern birds, and contains fossils on every Gondwanan continent except India. However, most of fifty-nine named taxa are isolated skeletal elements, many of which are noncomparable. Fossil diversity is highest in New Zealand, with additional Antarctic and Patagonian faunas and fewer remains from Australia and South Africa. Phylogenetic hypotheses place penguins within Aves and Neornithes, but further relationships remain contentious. Recent work clarified living species' phylogeny, but none examined all fossil taxa. I
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