Relevant bibliographies by topics / Fiji software

Contents

  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers

Academic literature on the topic 'Fiji software'

Author: Grafiati
Published: 5 June 2025
Last updated: 15 July 2025

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Journal articles on the topic "Fiji software"

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Brahmadhi, Ageng, and Ira Citra Ningrom. "Comparative Analysis of Kidney Histomorphometry Utilizing Two Distinct Image Processing Software." Journal of Biomedicine and Translational Research 9, no. 3 (2023): 104–10. http://dx.doi.org/10.14710/jbtr.v9i3.18554.

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ABSTRACTBackground: Histopathological examination is critical to evaluate tissue condition. An accurate assessment is necessary for diagnosis establishment. Nowadays, both quantitative and qualitative scoring are enhanced with computer-assisted image analysis to reduce bias. Various software was developed to assist in image analysis. The question of whether the measurement results from one software will be comparable to those from another software may come up, given the wide variety of software options. Nevertheless, this subject is only occasionally discussed.Objective: This study aimed to co
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Thomas, Laurent S. V., Franz Schaefer, and Jochen Gehrig. "Fiji plugins for qualitative image annotations: routine analysis and application to image classification." F1000Research 9 (February 12, 2021): 1248. http://dx.doi.org/10.12688/f1000research.26872.2.

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Quantitative measurements and qualitative description of scientific images are both important to describe the complexity of digital image data. While various software solutions for quantitative measurements in images exist, there is a lack of simple tools for the qualitative description of images in common user-oriented image analysis software. To address this issue, we developed a set of Fiji plugins that facilitate the systematic manual annotation of images or image-regions. From a list of user-defined keywords, these plugins generate an easy-to-use graphical interface with buttons or checkb
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Thomas, Laurent S. V., Franz Schaefer, and Jochen Gehrig. "Fiji plugins for qualitative image annotations: routine analysis and application to image classification." F1000Research 9 (October 15, 2020): 1248. http://dx.doi.org/10.12688/f1000research.26872.1.

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Quantitative measurements and qualitative description of scientific images are both important to describe the complexity of digital image data. While various software solutions for quantitative measurements in images exist, there is a lack of simple tools for the qualitative description of images in common user-oriented image analysis software. To address this issue, we developed a set of Fiji plugins that facilitate the systematic manual annotation of images or image-regions. From a list of user-defined keywords, these plugins generate an easy-to-use graphical interface with buttons or checkb
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Davis, Janel L., Brian Soetikno, Ki-Hee Song, Yang Zhang, Cheng Sun, and Hao F. Zhang. "RainbowSTORM: an open-source ImageJ plug-in for spectroscopic single-molecule localization microscopy (sSMLM) data analysis and image reconstruction." Bioinformatics 36, no. 19 (2020): 4972–74. http://dx.doi.org/10.1093/bioinformatics/btaa635.

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Abstract Summary Spectroscopic single-molecule localization microscopy (sSMLM) simultaneously captures the spatial locations and full spectra of stochastically emitting fluorescent single molecules. It provides an optical platform to develop new multimolecular and functional imaging capabilities. While several open-source software suites provide subdiffraction localization of fluorescent molecules, software suites for spectroscopic analysis of sSMLM data remain unavailable. RainbowSTORM is an open-source ImageJ/FIJI plug-in for end-to-end spectroscopic analysis and visualization for sSMLM imag
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Nayak, U. P., M. Müller, D. Britz, M. A. Guitar, and F. Mücklich. "Image Processing using Open Source Tools and their Implementation in the Analysis of Complex Microstructures." Practical Metallography 58, no. 8 (2021): 484–506. http://dx.doi.org/10.1515/pm-2021-0039.

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Abstract Considering the dependance of materials’ properties on the microstructure, it is imperative to carry out a thorough microstructural characterization and analysis to bolster its development. This article is aimed to inform the users about the implementation of FIJI, an open source image processing software for image segmentation and quantitative microstructural analysis. The rapid advancement of computer technology in the past years has made it possible to swiftly segment and analyze hundreds of micrographs reducing hours’ worth of analysis time to a mere matter of minutes. This has le
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Hartrampf, Philipp E., Marieke Heinrich, Anna Katharina Seitz, et al. "Metabolic Tumour Volume from PSMA PET/CT Scans of Prostate Cancer Patients during Chemotherapy—Do Different Software Solutions Deliver Comparable Results?" Journal of Clinical Medicine 9, no. 5 (2020): 1390. http://dx.doi.org/10.3390/jcm9051390.

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(1) Background: Prostate-specific membrane antigen (PSMA)-derived tumour volume (PSMA-TV) and total lesion PSMA (TL-PSMA) from PSMA PET/CT scans are promising biomarkers for assessing treatment response in prostate cancer (PCa). Currently, it is unclear whether different software tools for assessing PSMA-TV and TL-PSMA produce comparable results. (2) Methods: 68Ga-PSMA PET/CT scans from n = 21 patients with castration-resistant PCa (CRPC) receiving chemotherapy were identified from our single-centre database. PSMA-TV and TL-PSMA were calculated with Syngo.via (Siemens) as well as the freely av
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Naqvi, Tanveer Haider. "Status and Impact of Social Media and Networking Sites on Students of College of Medicine Nursing and Health Sciences." DESIDOC Journal of Library & Information Technology 39, no. 4 (2019): 187–91. http://dx.doi.org/10.14429/djlit.39.4.14460.

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 The present study investigated the status and impact of social media and networking sites on College of Medicine Nursing and Health Sciences’ students of Fiji National University, Fiji. Likert scale was used in the questionnaire. The collected data from 516 (86.00 per cent) usable questionnaires was tabulated and analysed using statistical tools and techniques. The findings showed that the majority of students participated in and satisfied with high usage of Facebook, YouTube, and Instagram accessed through laptops and PCs on daily and weekly basis. The students made their
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Pouchin, Pierre, Rayan Zoghlami, Rémi Valarcher, et al. "Easing batch image processing from OMERO: a new toolbox for ImageJ." F1000Research 11 (April 5, 2022): 392. http://dx.doi.org/10.12688/f1000research.110385.1.

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The Open Microscopy Environment Remote Objects (OMERO) is an open source image manager used by many biologists to store, organize, view and share microscopy images, while the open source software ImageJ/Fiji is a very popular program used to analyse them. However, there is a lack of an easy-to-use generic tool to run a workflow on a batch of images without having to download them to local computers; and to automatically organize the results in OMERO. To offer this functionality, we have built three tools in Java language: “Simple OMERO Client”, a library to communicate with an OMERO database f
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Pouchin, Pierre, Rayan Zoghlami, Rémi Valarcher, et al. "Easing batch image processing from OMERO: a new toolbox for ImageJ." F1000Research 11 (September 12, 2022): 392. http://dx.doi.org/10.12688/f1000research.110385.2.

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The Open Microscopy Environment Remote Objects (OMERO) is an open-source image manager used by many biologists to store, organize, view, and share microscopy images, while the open-source software ImageJ/Fiji is a very popular program used to analyse them. However, there is a lack of an easy-to-use generic tool to run a workflow on a batch of images without having to download them to local computers, and to automatically organize the results in OMERO. To offer this functionality, we have built (i) a library in Java: “Simple OMERO Client”, to communicate with an OMERO database from Java softwar
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Nunez-Iglesias, Juan, Adam J. Blanch, Oliver Looker, Matthew W. Dixon, and Leann Tilley. "A new Python library to analyse skeleton images confirms malaria parasite remodelling of the red blood cell membrane skeleton." PeerJ 6 (February 15, 2018): e4312. http://dx.doi.org/10.7717/peerj.4312.

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We present Skan (Skeleton analysis), a Python library for the analysis of the skeleton structures of objects. It was inspired by the “analyse skeletons” plugin for the Fiji image analysis software, but its extensive Application Programming Interface (API) allows users to examine and manipulate any intermediate data structures produced during the analysis. Further, its use of common Python data structures such as SciPy sparse matrices and pandas data frames opens the results to analysis within the extensive ecosystem of scientific libraries available in Python. We demonstrate the validity of Sk
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Dissertations / Theses on the topic "Fiji software"

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Rebhan, Erika, and Ellinor Wahnström. "Renewable power generation for developing societies on a remote island in Fiji : A case study." Thesis, KTH, Hållbar utveckling, miljövetenskap och teknik, 2020. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-283594.

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Access to electricity is an important factor for rural development as many needs and services such as education, health care and water supply all have energy requirements. The aim of this study was to develop a sustainable electrification system based on renewable energy for the remote village Keteira on Moala Island, Fiji. Keteira does not currently have any reliable electricity supply, but the Fijian Government has set ambitious goals regarding electricity access and the renewable share in the power generation which led to the conclusion that Keteira in the near future will have access to el
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Alcócer, Povis Carlos Martín, and Vargas Johnny Nina. "Sistema de administración de instrumentos de deuda de renta fija." Bachelor's thesis, Universidad Peruana de Ciencias Aplicadas (UPC), 2013. http://hdl.handle.net/10757/273725.

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López-Vera, Flórez Pedro Pablo. "Evaluación del proceso de generación de propuestas de precio fijo para la implementación de software empaquetado." Bachelor's thesis, Pontificia Universidad Católica del Perú, 2008. http://tesis.pucp.edu.pe/repositorio/handle/123456789/351.

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Esta tendencia ha generado una importante oportunidad de negocio para compañías de Servicios de Información que se dediquen a la implementación de este tipo de Software, especialmente para aquellas dispuestas a presentar propuestas de precio fijo. Este tipo de propuesta es la más requerida por las compañías pertenecientes a este segmento de mercado ya que les permite transferir al proveedor el riesgo de asumir costos inesperados durante la implementación del software. El presente estudio pretende brindar a estas compañías, especialmente aquellas que no cuentan con metodologías y procedimientos
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Aniceto, Sotero Martín Eduardo. "Sistema de gestión de servicios para centrales de conmutación de telefonía fija." Bachelor's thesis, Universidad Peruana de Ciencias Aplicadas (UPC), 2013. http://hdl.handle.net/10757/274130.

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El presente proyecto está referido a la integración de los sistemas comerciales de una empresa de telecomunicaciones con su red de centrales de conmutación para telefonía fija. Con esta implementación se espera reducir los niveles de errores humanos, posibles fraudes por accesos indebidos y sobre todo, incrementar los niveles de satisfacción del cliente y la calidad en la atención. El documento se ha estructurado para que el lector pueda situarse en el negocio, entender el problema y finalmente hacer lo propio con la solución e implementación. Se inicia presentando a la empresa objeto del estu
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Sztulzaft, Patrick. "Green-expert : un solveur généralisé associé à un générateur de formulations pour la méthode des intégrales de frontières." Grenoble INPG, 1994. https://hal.archives-ouvertes.fr/tel-01331763.

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De nombreux secteurs de l'industrie et de la recherche utilisent la modélisation des phénomènes de la physique des milieux continus. Les équations aux dérivées partielles décrivant ces phénomènes sont résolues à l'aide de diverses méthodes numériques. Les modélisations utilisées sont de plus en plus pointues, tant au niveau physique qu'au niveau numérique. Les réponses logicielles à ces problèmes doivent donc être évolutives. Ce travail s'insère dans une dynamique de recherche dans le domaine de la modélisation des phénomènes complexes qui a débuté avec l'élaboration du programme Flux-Expert®,
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Déharbe, David. "Vérification formelle de propriétés temporelles : étude et application au langage VHDL." Université Joseph Fourier (Grenoble ; 1971-2015), 1996. http://www.theses.fr/1996GRE10229.

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La verification de modele (model checking) est une technique permettant de verifier le comportement d'une machine d'etats finis specifie au moyen d'une propriete exprimee dans une logique temporelle. En combinant cette methode avec une representation symbolique par arbres de decision binaires, il est possible de traiter des exemples de taille importante. Un premier obstacle a l'utilisation pratique de ces methodes reste la complexite des algorithmes utilises. Nous proposons une methode de representation des transitions qui permet de combiner dans une proportion quelconque la representation par
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Eustache, Patrick. "Utilisation d'un environnement éléments finis (S. I. C. ) pour le traitement couple en magnéto-thermique." Grenoble INPG, 1995. https://hal.science/tel-01570156.

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L'objectif de cette étude est de développer dans l'environnement éléments finis S. I. C. (Système Interactif de Conception), des outils informatiques permettant le traitement de phénomènes physiques couplés. Nous avons étudié en particulier les spécificités du couplage magnéto-thermique. Nous présentons les problèmes posés, puis en nous appuyant sur une application de magnéto-formage, nous justifions les solutions que nous avons programmées. En effet, ce type de couplage comporte de nombreuses difficultés. Tout d'abord, il faut disposer de tous les outils et les modèles permettant une représen
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CHEMAA, TOUFIK. "Validation d'un code de calcul par éléments finis et conception de ses progiciels d'accompagnement." Université Joseph Fourier (Grenoble), 1997. http://www.theses.fr/1997GRE10272.

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Le principal probleme au niveau de la construction des ouvrages en site urbain est lie au manque de terrains disponibles, a la surface reduite des terrains, a leur cout eleve, et a la proximite d'ouvrages plus anciens a preserver. Le tassement des fondations, ou le deplacement des ouvrages de soutenement revet alors une grande importance, et peut conduire eventuellement a des tassements differentiels nefastes dans les batiments riverains. La mecanique des sols classique donne avec une bonne precision la charge limite des fondations, mais manque de precision pour determiner la deformation du so
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Nicolin, Jean-Pierre. "Evaluation des echanges thermiques par rayonnement dans un local soumis a un incendie." Paris 6, 1987. http://www.theses.fr/1987PA066555.

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Developpement des modules informatiques pour un logiciel de simulation de feu de compartiment (fisba), etudiant et comparant plusieurs techniques d'evaluation des transferts thermiques radiatifs. Amelioration d'une methode a six-flux pour milieu confine; presentation d'une methode des zones par quadratures numeriques (souplesse du maillage); consideration de modeles plus grossiers mais plus rapides en temps de calcul, par simplification des integrales d'echange. Bon accord constate entre ces methodes et avec celle de hottel; considerations sur la justification de l'emploi de modeles simples a
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Surdon, Gilles. "Simulation numérique du forgeage tridimensionnel à chaud." Paris, ENMP, 1986. http://www.theses.fr/1986ENMP0007.

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Etude d'un logiciel d'éléments finis en grandes déformations avec frottement pour un matériau viscoplastique permettant une simulation de l'écoulement complexe du matériau en forgeage à chaud tridimensionnel
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Books on the topic "Fiji software"

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Morales García, Mº Dolores. Fiji Software User Manual. UAM Ediciones, 2022. http://dx.doi.org/10.15366/9788483448380.

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This user manual focuses on Fiji (Fiji Is Just ImageJ), a processing tool based on the ImageJ program but largest and with best-known distribution than ImageJ. Its main purpose is the dissemination of an ImageJ with Java, Java 3D, more plugins integrated and organized in a menu with a consistent structure to facilitate image processing in the scientific community, scripting languages and extensive tutorials and documentation. It is easier to install than ImageJ, because it organizes all required components into a self-contained package that will run on any computer platform and contains an aut
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Pathan, Mukaddim, Giancarlo Fortino, Giuseppe Di Fatta, Antonio Guerrieri, and A.B.M. Shawkat Ali. Internet and Distributed Computing Systems: 10th International Conference, IDCS 2017, Mana Island, Fiji, December 11-13, 2017, Proceedings. Springer, 2018.

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Scientific Engineering for Distributed Java Applications: International Workshop, FIDJI 2002, Luxembourg, Luxembourg, November 28-29, 2002, Revised Papers (Lecture Notes in Computer Science). Springer, 2003.

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(Editor), Nicolas Guelfi, Gianna Reggio (Editor), and Alexander Romanovsky (Editor), eds. Scientific Engineering of Distributed Java Applications: 4th International Workshop, FIDJI 2004, Luxembourg-Kirchberg, Luxembourg, November 24-25, 2004, ... Papers (Lecture Notes in Computer Science). Springer, 2005.

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Guelfi, Nicoals, Egidio Astesiano, and Gianna Reggio. Scientific Engineering of Distributed Java Applications: Third International Workshop, FIDJI 2003, Luxembourg-Kirchberg, Luxembourg, November 27-28, 2003, Revised Papers. Springer London, Limited, 2004.

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Guelfi, Nicolas, Alexander Romanovsky, and Gianna Reggio. Scientific Engineering of Distributed Java Applications: 4th International Workshop, FIDJI 2004, Luxembourg-Kirchberg, Luxembourg, November 24-25, 2004, Revised Selected Papers. Springer London, Limited, 2008.

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Book chapters on the topic "Fiji software"

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Carrasco, Elisa, María I. Calvo, and Jesús Espada. "DNA Labeling In Vivo: Quantification of Epidermal Stem Cell Chromatin Content in Whole Mouse Hair Follicles Using Fiji Image Processing Software." In Methods in Molecular Biology. Humana Press, 2013. http://dx.doi.org/10.1007/978-1-62703-706-8_7.

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Goundar, Sam, Abraham Colin Chongkit, Shalvendra Kumar, and Akashdeep Bhardwaj. "Network Security Evaluation and Threat Assessments in Enterprise Systems." In Impact of Digital Transformation on Security Policies and Standards. IGI Global, 2020. http://dx.doi.org/10.4018/978-1-7998-2367-4.ch009.

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Companies have realized the need to have the competitive edge over their rivals. Enterprise systems provide this competitive edge. But with implementing enterprise system software (ESS), companies have to invest in the networking of their various business offices to interconnect to ESS. This chapter investigates the various ways two companies in Fiji do this and the various disadvantages they face from lack of knowledge of ESS to infrastructure limitations and issues faced in a developing country like Fiji. This chapter focuses on the network security issues of enterprise systems deployed in two companies in Fiji. It compares the information gathered to published papers on network infrastructure, network security issues, and threat assessments. It also proposes solutions to mitigate the security issues faced by enterprise systems networks.
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Kunza, Arifa, and Ramazan Asmatulu. "Aircraft Interior Noise Reduction through Flame-Retardant Polymeric Porous Nanocomposite Materials." In Proceedings of the 2023 International IEMS Conference, March 5-7, 2023. Wichita State University, 2023. http://dx.doi.org/10.62704/10057/26125.

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This study investigates the high melting temperature polymers of polyether ether ketone (PEEK) and polyaryletherketone (PAEK) incorporated with carbon and ceramic nanoparticles (graphene, multiwall carbon nanotubes, carbon black, TiO2, SiO2) for the reduction of aircraft interior noise. These materials are applicable to form porous nanocomposite structures, which are new in research with lighter weights and are suitable, especially in aircraft and other space applications. The materials' properties were characterized using scanning electron microscopy (SEM), confocal laser microscope, differential scanning calorimeter (DSC), thermogravimetric analysis (TGA), FIJI software, and noise absorption and transmission loss units. The testing parameters and variables of these porous materials could supply reliable experimental validation via special characteristics, surface morphology, and geometric microstructural analysis. The test results indicated that these porous nanocomposite materials have extraordinary physical and chemical properties and would have great potential to use in aircraft interior noise reductions and similar other sound absorption purposes.
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Conference papers on the topic "Fiji software"

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Keczer, B., P. Miheller, M. Horváth, et al. "Differentiation Between Pancreatic Cystic Lesions Using Image Processing Software (FIJI) by Analyzing Endoscopic Ultrasonographic (EUS) Images." In ESGE Days 2021. Georg Thieme Verlag KG, 2021. http://dx.doi.org/10.1055/s-0041-1724331.

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Keczer, B., P. Miheller, M. Horváth, et al. "DIFFERENTIATION BETWEEN PANCREATIC CYSTIC LESIONS USING IMAGE PROCESSING SOFTWARE (FIJI) BY ANALYZING ENDOSCOPIC ULTRASONOGRAPHIC (EUS) IMAGES." In ESGE Days. © Georg Thieme Verlag KG, 2020. http://dx.doi.org/10.1055/s-0040-1704594.

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Singh, Krishneel A., Saiyad S. Kutty, M. G. M. Khan, and Mohammed Rafiuddin Ahmed. "Wind Energy Resource Assessment for Suva, Fiji and Design of a 30 kW Wind Turbine." In ASME 2021 International Mechanical Engineering Congress and Exposition. American Society of Mechanical Engineers, 2021. http://dx.doi.org/10.1115/imece2021-73401.

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Abstract Fiji needs to invest in renewable energy sources to meet its energy needs to reduce the country’s dependence on imported fossil fuels. For investing in wind energy projects, a detailed assessment of wind energy resource is required. In this work, wind speeds were measured at 34 m and 20 m above ground level at a site in Suva for three years and the daily, monthly, yearly and seasonal averages were estimated. Average turbulence intensities at the two heights were also estimated. The Weibull parameters, average wind speed and the wind power density were estimated by using eleven frequen
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Ali, Muzammil, Reemal D. Prasad, and Mohammed Rafiuddin Ahmed. "Feasibility Study and Design of a Seawater Air-Conditioning System for a University Building in Fiji." In ASME 2022 International Mechanical Engineering Congress and Exposition. American Society of Mechanical Engineers, 2022. http://dx.doi.org/10.1115/imece2022-96152.

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Abstract The demand for space cooling in Fiji is increasing rapidly due to a high infrastructure development rate in the country. Seawater air conditioning is a solution to the problem of space cooling using renewable energy. In this work, a feasibility study and design of a SWAC system for a university building is carried out. The feasibility study included the cooling load calculations, the availability of seawater and the location of the building. The cooling load was estimated using CAMEL software which came to be about 509 kW. Local bathymetry charts were studied to determine the depth of
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Naidu, Som, Dhiraj Bhartu, and Tony Mays. "Access to ICT Infrastructure and Devices in the South Pacific." In Tenth Pan-Commonwealth Forum on Open Learning. Commonwealth of Learning, 2022. http://dx.doi.org/10.56059/pcf10.3503.

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The South Pacific region spreads over more than 30 million square kilometres of the Pacific Ocean. The region comprises more than a dozen island nations ranging from small volcanic islands to even smaller coral atolls. Population masses in the island nations vary from around 2,000 in Tokelau to a little more than 800,000 in the Republic of Fiji. Access to information and communications technologies and internet connectivity in the region is varied. This project involves the design and conduct of a desktop study into access to ICT infrastructure, connectivity and devices and their use by studen
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Muthu, Madhan, and Tony Mays. "Structured Access to Curated Open Educational Resources Aligned to National School Curricula: An Experiment in the Commonwealth Member States in the Pacific Region." In Tenth Pan-Commonwealth Forum on Open Learning. Commonwealth of Learning, 2022. http://dx.doi.org/10.56059/pcf10.7674.

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We have been witnessing a global experiment in delivering emergency remote teaching using distance learning, internet, web and related technologies, since the World Health Organization announced its assessment that ‘Covid-19 can be characterized as a pandemic’ on 11 March 2020. // The shift to digital has made more teachers and institutions realise the importance of structured access to open educational resources (OER) – learning materials having open licenses. However, availability of OER in a structured way alone, though important, may not increase the use and re-use by teachers and learners
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Ifham, Mohamed, B. T. G. S. Kumara, and E. M. U. W. J. B. Ekanayaka. "Neural Network-based Approach for Source Code Classification to Enhance Software Maintainability and Reusability." In 2021 From Innovation To Impact (FITI). IEEE, 2021. http://dx.doi.org/10.1109/fiti54902.2021.9833070.

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Ganesan, Elaiyasuriyan, I.-Shyan Hwang, and Andrew Tanny Liem. "Resource Allocation for Tactile Internet via Software-Defined FiWi Access Network." In 2020 International Computer Symposium (ICS). IEEE, 2020. http://dx.doi.org/10.1109/ics51289.2020.00063.

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Breskovic, Damir. "Real options analysis for HetNet and WLAN based FiWi access networks deployment." In 2016 24th International Conference on Software, Telecommunications and Computer Networks (SoftCOM). IEEE, 2016. http://dx.doi.org/10.1109/softcom.2016.7772175.

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Yugulis, Kevin, David Chase, and Brian Kenney. "Integration and Testing of HeatCoat Carbon-Nanotube Ice Protection System on an Unmanned Aerial Vehicle." In International Conference on Icing of Aircraft, Engines, and Structures. SAE International, 2023. http://dx.doi.org/10.4271/2023-01-1375.

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<div class="section abstract"><div class="htmlview paragraph">The process for certifying an existing aircraft for flight into known icing is well defined and must follow specific guidelines and meet specific milestones. As UAVs are still a relatively recent development, guidelines for icing flight certification of a UAV have not yet been developed by the FAA, and no UAVs have yet been certified for FIKI under the FAA. As part of a research program, engineers at the Battelle Memorial Institute in Columbus, OH USA worked with partners to integrate its ice protection system, HeatCoat&
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