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Journal articles on the topic 'Fine-scale genetic structure'

Author: Grafiati
Published: 4 June 2021
Last updated: 26 July 2025

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1

Kerminen, Sini, Aki S. Havulinna, Garrett Hellenthal, et al. "Fine-Scale Genetic Structure in Finland." G3: Genes|Genomes|Genetics 7, no. 10 (2017): 3459–68. http://dx.doi.org/10.1534/g3.117.300217.

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2

Gagnon, Laurence, Claudia Moreau, Catherine Laprise, and Simon L. Girard. "Fine-scale genetic structure and rare variant frequencies." PLOS ONE 19, no. 11 (2024): e0313133. http://dx.doi.org/10.1371/journal.pone.0313133.

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In response to the current challenge in genetic studies to make new associations, we advocate for a shift toward leveraging population fine-scale structure. Our exploration brings to light distinct fine-structure within populations having undergone a founder effect such as the Ashkenazi Jews and the population of the Quebec’ province. We leverage the fine-scale population structure to explore its impact on the frequency of rare variants. Notably, we observed an 8-fold increase in frequency for a variant associated with the Usher syndrome in one Quebec subpopulation. Our study underscores that
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3

Karakachoff, Matilde, Nicolas Duforet-Frebourg, Floriane Simonet, et al. "Fine-scale human genetic structure in Western France." European Journal of Human Genetics 23, no. 6 (2014): 831–36. http://dx.doi.org/10.1038/ejhg.2014.175.

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4

DICK, CHRISTOPHER W. "New interpretations of fine-scale spatial genetic structure." Molecular Ecology 17, no. 8 (2008): 1873–74. http://dx.doi.org/10.1111/j.1365-294x.2008.03728.x.

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5

SMOUSE, PETER E., ROD PEAKALL, and EVA GONZALES. "A heterogeneity test for fine-scale genetic structure." Molecular Ecology 17, no. 14 (2008): 3389–400. http://dx.doi.org/10.1111/j.1365-294x.2008.03839.x.

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6

Doligez, Agnès, Claire Baril, and Hélène I. Joly. "Fine-Scale Spatial Genetic Structure with Nonuniform Distribution of Individuals." Genetics 148, no. 2 (1998): 905–19. http://dx.doi.org/10.1093/genetics/148.2.905.

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Abstract This paper presents the first theoretical study of spatial genetic structure within nonuniformly distributed continuous plant populations. A novel individual-based model of isolation by distance was constructed to simulate genetic evolution within such populations. We found larger values of spatial genetic autocorrelations in highly clumped populations than in uniformly distributed populations. Most of this difference was caused by differences in mean dispersal distances, but aggregation probably also produced a slight increase in spatial genetic structure. Using an appropriate level
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7

Berg, Edward E., and James L. Hamrick. "Fine-Scale Genetic Structure of a Turkey Oak Forest." Evolution 49, no. 1 (1995): 110. http://dx.doi.org/10.2307/2410297.

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8

Nituch, Larissa A., James A. Schaefer, and Christine D. Maxwell. "Fine-Scale Spatial Organization Reflects Genetic Structure in Sheep." Ethology 114, no. 7 (2008): 711–17. http://dx.doi.org/10.1111/j.1439-0310.2008.01522.x.

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9

Leslie, Stephen, Bruce Winney, Garrett Hellenthal, et al. "The fine-scale genetic structure of the British population." Nature 519, no. 7543 (2015): 309–14. http://dx.doi.org/10.1038/nature14230.

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10

Berg, Edward E., and James L. Hamrick. "FINE-SCALE GENETIC STRUCTURE OF A TURKEY OAK FOREST." Evolution 49, no. 1 (1995): 110–20. http://dx.doi.org/10.1111/j.1558-5646.1995.tb05963.x.

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11

Walker, Alana N., Stephanie A. Foré, and Beverly Collins. "Fine-scale structure within a Trillium maculatum (Liliaceae) population." Botany 87, no. 3 (2009): 223–30. http://dx.doi.org/10.1139/b08-135.

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In long-lived ant-dispersed perennial herbs of mesic forests, interactions among fruiting plants, seed dispersal, and plant mortality over life-history stages can create demographic and genetic structure. We investigated whether there was nonrandom variation in the distributions of individuals and in genetic diversity within and among life-history stages of the forest herb Trillium maculatum Raf. (Liliaceae). In 2002 and 2004, all T. maculatum plants in a 5 m × 5 m plot (1572 and 1379 individuals, respectively) were mapped and classified as seedling, one-leaf, three-leaf nonflowering, or flowe
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12

Costa, Camila Fernanda, Rosane Garcia Collevatti, Lázaro José Chaves, Jacqueline de Souza Lima, Thannya Nascimento Soares, and Mariana Pires de Campos Telles. "Genetic diversity and fine-scale genetic structure in Hancornia speciosa Gomes (Apocynaceae)." Biochemical Systematics and Ecology 72 (June 2017): 63–67. http://dx.doi.org/10.1016/j.bse.2017.03.001.

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13

Brazeau, DA, PW Sammarco, and AD Atchison. "Micro-scale genetic heterogeneity and structure in coral recruitment: fine-scale patchiness." Aquatic Biology 12, no. 1 (2011): 55–67. http://dx.doi.org/10.3354/ab00313.

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14

Kerminen, Sini, Nicola Cerioli, Darius Pacauskas, et al. "Changes in the fine-scale genetic structure of Finland through the 20th century." PLOS Genetics 17, no. 3 (2021): e1009347. http://dx.doi.org/10.1371/journal.pgen.1009347.

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Information about individual-level genetic ancestry is central to population genetics, forensics and genomic medicine. So far, studies have typically considered genetic ancestry on a broad continental level, and there is much less understanding of how more detailed genetic ancestry profiles can be generated and how accurate and reliable they are. Here, we assess these questions by developing a framework for individual-level ancestry estimation within a single European country, Finland, and we apply the framework to track changes in the fine-scale genetic structure throughout the 20th century.
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15

Chaichoompu, Kridsadakorn, Fentaw Abegaz, Bruno Cavadas, et al. "A different view on fine-scale population structure in Western African populations." Human Genetics 139, no. 1 (2019): 45–59. http://dx.doi.org/10.1007/s00439-019-02069-7.

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Abstract Due to its long genetic evolutionary history, Africans exhibit more genetic variation than any other population in the world. Their genetic diversity further lends itself to subdivisions of Africans into groups of individuals with a genetic similarity of varying degrees of granularity. It remains challenging to detect fine-scale structure in a computationally efficient and meaningful way. In this paper, we present a proof-of-concept of a novel fine-scale population structure detection tool with Western African samples. These samples consist of 1396 individuals from 25 ethnic groups (t
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16

Wagner, D. N., T. Z. Baris, D. I. Dayan, X. Du, M. F. Oleksiak, and D. L. Crawford. "Fine-scale genetic structure due to adaptive divergence among microhabitats." Heredity 118, no. 6 (2017): 594–604. http://dx.doi.org/10.1038/hdy.2017.6.

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17

Noble, Cortney W., Jeremy M. Bono, Helen K. Pigage, David W. Hale, and Jon C. Pigage. "Fine-Scale Genetic Structure in Female Mule Deer (Odocoileus hemionus)." Western North American Naturalist 76, no. 4 (2016): 417–26. http://dx.doi.org/10.3398/064.076.0404.

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18

WOXVOLD, IAIN A., GREG J. ADCOCK, and RAOUL A. MULDER. "Fine-scale genetic structure and dispersal in cooperatively breeding apostlebirds." Molecular Ecology 15, no. 11 (2006): 3139–46. http://dx.doi.org/10.1111/j.1365-294x.2006.03009.x.

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19

ARCHIE, ELIZABETH A., JÉSUS E. MALDONADO, JULIE A. HOLLISTER-SMITH, et al. "Fine-scale population genetic structure in a fission-fusion society." Molecular Ecology 17, no. 11 (2008): 2666–79. http://dx.doi.org/10.1111/j.1365-294x.2008.03797.x.

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20

Coltman, D. W., J. G. Pilkington, and J. M. Pemberton. "Fine-scale genetic structure in a free-living ungulate population." Molecular Ecology 12, no. 3 (2003): 733–42. http://dx.doi.org/10.1046/j.1365-294x.2003.01762.x.

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21

Hua, Panyu, Libiao Zhang, Tingting Guo, Jon Flanders, Shuyi Zhang, and Vincent Laudet. "Dispersal, Mating Events and Fine-Scale Genetic Structure in the Lesser Flat-Headed Bats." PLoS ONE 8, no. 1 (2013): e54428. https://doi.org/10.5281/zenodo.13447926.

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(Uploaded by Plazi for the Bat Literature Project) Population genetic structure has important consequences in evolutionary processes and conservation genetics in animals. Fine-scale population genetic structure depends on the pattern of landscape, the permanent movement of individuals, and the dispersal of their genes during temporary mating events. The lesser flat-headed bat (Tylonycteris pachypus) is a nonmigratory Asian bat species that roosts in small groups within the internodes of bamboo stems and the habitats are fragmented. Our previous parentage analyses revealed considerable extra-gr
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22

Hua, Panyu, Libiao Zhang, Tingting Guo, Jon Flanders, Shuyi Zhang, and Vincent Laudet. "Dispersal, Mating Events and Fine-Scale Genetic Structure in the Lesser Flat-Headed Bats." PLoS ONE 8, no. 1 (2013): e54428. https://doi.org/10.5281/zenodo.13447926.

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(Uploaded by Plazi for the Bat Literature Project) Population genetic structure has important consequences in evolutionary processes and conservation genetics in animals. Fine-scale population genetic structure depends on the pattern of landscape, the permanent movement of individuals, and the dispersal of their genes during temporary mating events. The lesser flat-headed bat (Tylonycteris pachypus) is a nonmigratory Asian bat species that roosts in small groups within the internodes of bamboo stems and the habitats are fragmented. Our previous parentage analyses revealed considerable extra-gr
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23

Hua, Panyu, Libiao Zhang, Tingting Guo, Jon Flanders, Shuyi Zhang, and Vincent Laudet. "Dispersal, Mating Events and Fine-Scale Genetic Structure in the Lesser Flat-Headed Bats." PLoS ONE 8, no. 1 (2013): e54428. https://doi.org/10.5281/zenodo.13447926.

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(Uploaded by Plazi for the Bat Literature Project) Population genetic structure has important consequences in evolutionary processes and conservation genetics in animals. Fine-scale population genetic structure depends on the pattern of landscape, the permanent movement of individuals, and the dispersal of their genes during temporary mating events. The lesser flat-headed bat (Tylonycteris pachypus) is a nonmigratory Asian bat species that roosts in small groups within the internodes of bamboo stems and the habitats are fragmented. Our previous parentage analyses revealed considerable extra-gr
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24

Hua, Panyu, Libiao Zhang, Tingting Guo, Jon Flanders, Shuyi Zhang, and Vincent Laudet. "Dispersal, Mating Events and Fine-Scale Genetic Structure in the Lesser Flat-Headed Bats." PLoS ONE 8, no. 1 (2013): e54428. https://doi.org/10.5281/zenodo.13447926.

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Abstract:
(Uploaded by Plazi for the Bat Literature Project) Population genetic structure has important consequences in evolutionary processes and conservation genetics in animals. Fine-scale population genetic structure depends on the pattern of landscape, the permanent movement of individuals, and the dispersal of their genes during temporary mating events. The lesser flat-headed bat (Tylonycteris pachypus) is a nonmigratory Asian bat species that roosts in small groups within the internodes of bamboo stems and the habitats are fragmented. Our previous parentage analyses revealed considerable extra-gr
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25

Hua, Panyu, Libiao Zhang, Tingting Guo, Jon Flanders, Shuyi Zhang, and Vincent Laudet. "Dispersal, Mating Events and Fine-Scale Genetic Structure in the Lesser Flat-Headed Bats." PLoS ONE 8, no. 1 (2013): e54428. https://doi.org/10.5281/zenodo.13447926.

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Abstract:
(Uploaded by Plazi for the Bat Literature Project) Population genetic structure has important consequences in evolutionary processes and conservation genetics in animals. Fine-scale population genetic structure depends on the pattern of landscape, the permanent movement of individuals, and the dispersal of their genes during temporary mating events. The lesser flat-headed bat (Tylonycteris pachypus) is a nonmigratory Asian bat species that roosts in small groups within the internodes of bamboo stems and the habitats are fragmented. Our previous parentage analyses revealed considerable extra-gr
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26

Chung, Mi Yoon, and Myong Gi Chung. "Fine-scale genetic structure in populations of Quercus variabilis (Fagaceae) from southern Korea." Canadian Journal of Botany 80, no. 10 (2002): 1034–41. http://dx.doi.org/10.1139/b02-094.

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Quercus variabilis Blume (Fagaceae) is a deciduous broad-leaved tree, and an important forest element among the hillsides of southern Korea. To date, there are contrasting results with respect to fine-scale spatial genetic structure among adults in populations of several oak species; some studies have shown evidence of significant within-population spatial genetic structure, while others found weak or little evidence of fine-scale genetic structuring within populations. We used allozyme loci, Wright's F statistics, and multilocus spatial autocorrelation statistics to examine the distribution o
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27

Jackson, Doug, Ash T. Zemenick, Brian Malloure, C. Alisha Quandt, and Timothy Y. James. "Fine-scale spatial genetic structure of a fungal parasite of coffee scale insects." Journal of Invertebrate Pathology 139 (September 2016): 34–41. http://dx.doi.org/10.1016/j.jip.2016.07.007.

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28

Degen, Bernd, Henri Caron, Eric Bandou, et al. "Fine-scale spatial genetic structure of eight tropical tree species as analysed by RAPDs." Heredity 87, no. 4 (2001): 497–507. https://doi.org/10.5281/zenodo.14818622.

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(Uploaded by Plazi for the Bat Literature Project) The ®ne-scale spatial genetic structure of eight tropical tree species (Chrysophyllum sanguinolentum, Carapa procera, Dicorynia guianensis, Eperua grandi¯ora, Moronobea coccinea, Symphonia globulifera, Virola michelii, Vouacapoua americana) was studied in populations that were part of a silvicultural trial in French Guiana. The species analysed have di€erent spatial distribution, sexual system, pollen and seed dispersal agents, ¯owering phenology and environmental demands. The spatial position of trees and a RAPD data set for each species were
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29

Kamel, SJ, AR Hughes, RK Grosberg, and JJ Stachowicz. "Fine-scale genetic structure and relatedness in the eelgrass Zostera marina." Marine Ecology Progress Series 447 (February 13, 2012): 127–37. http://dx.doi.org/10.3354/meps09447.

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30

Barluenga, M., F. Austerlitz, J. A. Elzinga, S. Teixeira, J. Goudet, and G. Bernasconi. "Fine-scale spatial genetic structure and gene dispersal in Silene latifolia." Heredity 106, no. 1 (2010): 13–24. http://dx.doi.org/10.1038/hdy.2010.38.

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31

HE, JIAN, XIAOYI LI, DANDAN GAO, et al. "Topographic effects on fine-scale spatial genetic structure inCastanopsis chinensisHance (Fagaceae)." Plant Species Biology 28, no. 1 (2012): 87–93. http://dx.doi.org/10.1111/j.1442-1984.2011.00365.x.

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32

Wang, Guiming, Wei Liu, Yanni Wang, Xinrong Wan, and Wenqin Zhong. "Restricted dispersal determines fine-scale spatial genetic structure of Mongolian gerbils." Current Zoology 63, no. 6 (2017): 687–91. http://dx.doi.org/10.1093/cz/zox044.

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33

Latch, Emily K., William I. Boarman, Andrew Walde, and Robert C. Fleischer. "Fine-Scale Analysis Reveals Cryptic Landscape Genetic Structure in Desert Tortoises." PLoS ONE 6, no. 11 (2011): e27794. http://dx.doi.org/10.1371/journal.pone.0027794.

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34

Smith, Steven E., Tulio Arredondo, Martín Aguiar, et al. "Fine-Scale Spatial Genetic Structure in Perennial Grasses in Three Environments." Rangeland Ecology & Management 62, no. 4 (2009): 356–63. http://dx.doi.org/10.2111/08-159.1.

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35

Takeuchi, Y., S. Ichikawa, A. Konuma, et al. "Comparison of the fine-scale genetic structure of three dipterocarp species." Heredity 92, no. 4 (2004): 323–28. http://dx.doi.org/10.1038/sj.hdy.6800411.

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36

Takeuchi, Fumihiko, Tomohiro Katsuya, Ryosuke Kimura, et al. "The fine-scale genetic structure and evolution of the Japanese population." PLOS ONE 12, no. 11 (2017): e0185487. http://dx.doi.org/10.1371/journal.pone.0185487.

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37

Piccinali, Romina Valeria, and Ricardo Esteban Gürtler. "Fine-scale genetic structure of Triatoma infestans in the Argentine Chaco." Infection, Genetics and Evolution 34 (August 2015): 143–52. http://dx.doi.org/10.1016/j.meegid.2015.05.030.

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38

NUSSEY, D. H., D. W. COLTMAN, T. COULSON, et al. "Rapidly declining fine-scale spatial genetic structure in female red deer." Molecular Ecology 14, no. 11 (2005): 3395–405. http://dx.doi.org/10.1111/j.1365-294x.2005.02692.x.

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39

Carlsson, J., K. H. Olsen, J. Nilsson, O. Overli, and O. B. Stabell. "Microsatellites reveal fine-scale genetic structure in stream-living brown trout." Journal of Fish Biology 55, no. 6 (1999): 1290–303. http://dx.doi.org/10.1111/j.1095-8649.1999.tb02076.x.

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40

Pandey, Madhav, Oliver Gailing, Hans H. Hattemer, and Reiner Finkeldey. "Fine-scale spatial genetic structure of sycamore maple (Acer pseudoplatanus L.)." European Journal of Forest Research 131, no. 3 (2011): 739–46. http://dx.doi.org/10.1007/s10342-011-0546-9.

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41

Nielsen, Jennifer L., Sara L. Graziano, and Andrew C. Seitz. "Fine-scale population genetic structure in Alaskan Pacific halibut (Hippoglossus stenolepis)." Conservation Genetics 11, no. 3 (2009): 999–1012. http://dx.doi.org/10.1007/s10592-009-9943-8.

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42

Loxterman, Janet L. "Fine scale population genetic structure of pumas in the Intermountain West." Conservation Genetics 12, no. 4 (2011): 1049–59. http://dx.doi.org/10.1007/s10592-011-0208-y.

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43

Crawford, Joanne C., Amy Dechen Quinn, David M. Williams, Brent A. Rudolph, Kim T. Scribner, and William F. Porter. "Fine-scale spatial genetic structure of deer in a suburban landscape." Journal of Wildlife Management 82, no. 3 (2018): 596–607. http://dx.doi.org/10.1002/jwmg.21417.

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44

Chablé Iuit, Landy R., Salima Machkour-M’Rabet, Julio Espinoza-Ávalos, Héctor A. Hernández-Arana, Haydée López-Adame, and Yann Hénaut. "Genetic Structure and Connectivity of the Red Mangrove at Different Geographic Scales through a Complex Transverse Hydrological System from Freshwater to Marine Ecosystems." Diversity 12, no. 2 (2020): 48. http://dx.doi.org/10.3390/d12020048.

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Mangrove forests are ecologically and economically valuable resources composed of trees morphologically and physiologically adapted to thrive across a range of habitats. Although, mangrove trees have high dispersion capacity, complexity of hydrological systems may lead to a fine-scale genetic structure (FSGS). The Transverse Coastal Corridor (TCC) is an interesting case of hydrological systems from fresh to marine waters where mangrove forests dominate. We evaluated genetic diversity and structure of Rhizophora mangle across a range of hydrological conditions within the TCC using inter-simple
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45

Lonsinger, R. C., R.M. Schweizer, J.P. Pollinger, R.K. Wayne, and G.W. Roemer. "Fine-scale genetic structure of the ringtail (Bassariscus astutus) in a Sky Island mountain range." Journal of Mammalogy 96 (June 7, 2015): 257–68. https://doi.org/10.1093/jmammal/gyv050.

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Landscape complexity provides opportunities for local adaptation and creates population genetic structure at limited geographic scales. We determined if fine-scale genetic structure was evident in a population of ringtails (Bassariscus astutus) inhabiting the Guadalupe Mountains, a small, isolated, and ecologically diverse mountain range in the southwest United States. We hypothesized that ringtails would exhibit either a genetic pattern of isolation by distance (IBD), because their small body size would most likely limit dispersal distances, or a pattern of isolation by resistance (IBR), beca
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46

Hu, Zhongwen, Fangyuan Yang, Deping Zhang, Shimeng Zhang, Xiaofei Yu, and Maofa Yang. "Genetic Diversity and Fine-Scale Genetic Structure of Spodoptera litura Fabricius (Lepidoptera: Noctuidae) in Southern China Based on Microsatellite Markers." Animals 13, no. 4 (2023): 560. http://dx.doi.org/10.3390/ani13040560.

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Population genetic structure is strongly affected by dispersal events, especially for migratory species. The investigation of population structure is therefore conducive to increasing our understanding of species dispersal. Spodoptera litura (Fabricius) (Lepidoptera: Noctuidae) is an important tobacco pest in China causing serious damage to multiple crops. In this study, we explore its dispersal dynamics by clarifying the fine-scale population genetics using 545 S. litura samples collected from tobacco plantations at 24 locations (mainly in Baise, Hechi, and Hezhou, Southern China). We analyze
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47

Beatty, William S., Patrick R. Lemons, Suresh A. Sethi, et al. "Panmixia in a sea ice-associated marine mammal: evaluating genetic structure of the Pacific walrus (Odobenus rosmarus divergens) at multiple spatial scales." Journal of Mammalogy 101, no. 3 (2020): 755–65. http://dx.doi.org/10.1093/jmammal/gyaa050.

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Abstract The kin structure of a species at relatively fine spatial scales impacts broad-scale patterns in genetic structure at the population level. However, kin structure rarely has been elucidated for migratory marine mammals. The Pacific walrus (Odobenus rosmarus divergens) exhibits migratory behavior linked to seasonal patterns in sea ice dynamics. Consequently, information on the spatial genetic structure of the subspecies, including kin structure, could aid wildlife managers in designing future studies to evaluate the impacts of sea ice loss on the subspecies. We sampled 8,303 individual
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48

Whitlock, Raj, Mark C. Bilton, J. Phil Grime, and Terry Burke. "Fine-scale community and genetic structure are tightly linked in species-rich grasslands." Philosophical Transactions of the Royal Society B: Biological Sciences 366, no. 1569 (2011): 1346–57. http://dx.doi.org/10.1098/rstb.2010.0329.

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Recent evidence indicates that grassland community structure and species diversity are influenced by genetic variation within species. We review what is known regarding the impact of intraspecific diversity on grassland community structure, using an ancient limestone pasture as a focal example. Two genotype-dependent effects appear to modify community structure in this system. First, the abundance of individual constituent species can depend upon the combined influence of direct genetic effects stemming from individuals within the population. Second, the outcome of localized interspecific inte
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49

Bothwell, Helen M., Arthur R. Keith, Hillary F. Cooper, et al. "Microevolutionary Processes in a Foundation Tree Inform Macrosystem Patterns of Community Biodiversity and Structure." Forests 14, no. 5 (2023): 943. http://dx.doi.org/10.3390/f14050943.

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Despite an increased focus on multiscale relationships and interdisciplinary integration, few macroecological studies consider the contribution of genetic-based processes to landscape-scale patterns. We test the hypothesis that tree genetics, climate, and geography jointly drive continental-scale patterns of community structure, using genome-wide SNP data from a broadly distributed foundation tree species (Populus fremontii S. Watson) and two dependent communities (leaf-modifying arthropods and fungal endophytes) spanning southwestern North America. Four key findings emerged: (1) Tree genetic
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50

Sepulveda-Villet, Osvaldo J., and Carol A. Stepien. "Fine-scale population genetic structure of the yellow perch Perca flavescens in Lake Erie." Canadian Journal of Fisheries and Aquatic Sciences 68, no. 8 (2011): 1435–53. http://dx.doi.org/10.1139/f2011-077.

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Discerning the genetic basis underlying fine-scale population structure of exploited native species and its relationship to management units is a critical goal for effective conservation. This study provides the first high-resolution genetic test of fine-scale relationships among spawning groups of the yellow perch Perca flavescens . Lake Erie yellow perch stocks comprise valuable sport and commercial fisheries and have fluctuated extensively owing to highly variable annual recruitment patterns. Fifteen nuclear DNA microsatellite loci are analyzed for 569 individuals from 13 primary Lake Erie
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