Academic literature on the topic 'Fossils'

In this thesis I attempt to gather together a wide range of cladistic analysis of fossil and extant taxa representing a diverse array of phylogenetic groups. I use this data to quantitatively compare the effect of fossil taxa relative to extant taxa in terms of support for relationships, number of most parsimonious trees (MPTs) and leaf stability. In line with previous studies I find that the effects of fossil taxa are seldom different to extant taxa – although I highlight some interesting exceptions. I also use this data to compare the phylogenetic signal within vertebrate morphological data sets, by choosing to compare cranial data to postcranial data. Comparisons between molecular data and morphological data have been previously well explored, as have signals between different molecular loci. But comparative signal within morphological data sets is much less commonly characterized and certainly not across a wide array of clades. With this analysis I show that there are many studies in which the evidence provided by cranial data appears to be be significantly incongruent with the postcranial data – more than one would expect to see just by the effect of chance and noise alone. I devise and implement a modification to a rarely used measure of homoplasy that will hopefully encourage its wider usage. Previously it had some undesirable bias associated with the distribution of missing data in a dataset, but my modification controls for this. I also take an in-depth and extensive review of the ILD test, noting it is often misused or reported poorly, even in recent studies. Finally, in attempting to collect data and metadata on a large scale, I uncovered inefficiencies in the research publication system that obstruct re-use of data and scientific progress. I highlight the importance of replication and reproducibility – even simple re-analysis of high profile papers can turn up some very different results. Data is highly valuable and thus it must be retained and made available for further re-use to maximize the overall return on research investment.

Patterns of fossil diagenesis caused by groundwater leaching provide insight into how shells are altered. This study analyzes fossils in unconsolidated terrigenous sediments from the Virginia Coastal Plain, unlike previous studies conducted mostly in carbonate terranes. The vertical and lateral distribution of diagenetic states was mapped in an outcrop (63 m by 2.1 m) of the Yorktown Formation. A paleostream channel located at one end was incised during the Pleistocene and filled with sediments of the Shirley Formation. The Tabb Formation unconformably overlies the outcrop. Acidic groundwater caused the observed patterns of fossil and sediment diagenesis. These patterns include zones of fossil alteration, diagenetic stratification of the sediment, and fossil diagenesis on a microstructural level. Groundwater movement, controlled by the presence of the paleochannel, caused diagenetic alteration or complete dissolution of the fossils, and possibly caused precipitation of fine-grained iron oxyhydroxides. All carbonate material in the vicinity of the paleochannel is completely dissolved away, although iron oxyhydroxide coatings of fossils remain. Away from the paleochannel Crepidula fornicata (gastropod; aragonite), Ostrea sp. (bivalve; calcite), Balanus sp. (barnacle; calcite), and bryozoans (calcite) are found in parallel zones of alteration that dip toward the paleochannel and cut across horizontal sedimentologic and fossiliferous layers. Groundwater also leached the Yorktown sediments. This alteration caused a diagenetic stratification of the sediment, with unaltered greenish-gray silty fine sand along the base of the outcrop, overlain by leached yellowish-brown silty fine sand and areas of concentrated iron oxyhydroxides. The preservation of both aragonitic and calcitic shells was affected by groundwater movement. Original aragonitic shell material is found as chalky, uncrystallized specimens or neomorphosed shells, or is completely dissolved with only molds or ghosts remaining. Neomorphosed specimens typically consist of calcite-replaced shell material with pockets of original aragonite, and sparry calcite filling empty shell cavities. Original calcitic shell material is either chalky or unaltered. Chalky shells range from relatively hard to soft and pasty. Crepidula shells of intermediate chalkiness tend to separate into thin flakes, caused by dissolution along growth surfaces. Chalkiness of pasty shells is caused by dissolution of shell material (without recrystallization) and not simply loss of organic matrix. SEM photos of Crepidula reveal the more porous and leached appearance of chalky shells in contrast with hard; unaltered shells. The presence of chalky aragonitic and calcitic shells indicates that chalky textures are, to some degree, independent of mineralogy and microstructure.<br>M.S.