Academic literature on the topic 'Free surfaces (Crystallography)'

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Journal articles on the topic "Free surfaces (Crystallography)"

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McKenan, Stuart, M. Grant Norton, and C. Barry Carter. "Low-energy surfaces and interfaces in aluminum nitride." Proceedings, annual meeting, Electron Microscopy Society of America 48, no. 4 (1990): 350–51. http://dx.doi.org/10.1017/s0424820100174886.

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As a potential semiconductor substrate material, aluminum nitride (AIN) has recently become the subject of much research. In particular, the nature of the defects which occur in this material is yet to be fully understood. The mechanical strength, high thermal conductivity and large electrical resistivity and a relatively small thermal expansion coefficient, of the defect-free, single crystal material make it extremely well suited for use as a semiconductor substrate material. The polycrystalline AIN contains grain- boundaries, second phases, and many internal defects, all of which may produce a degradation in the physical properties of the substrate. The characterization of these microstructural defects in this material is obviously necessary in the understanding of the properties of the polycrystalline material.AIN has the hexagonal, wurtzite structure rather than the cubic structure of the more common semiconductors. It is also a polar material, and many of the polar surfaces are low-index planes. Grain boundaries (and other interfaces) composed of different crystallographic planes may be expected to have different physical and electrical properties. This effect of the crystallography has been investigated by TEM in two ways; firstly, grain boundaries in polycrystalline AIN have been characterized.
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Nishiyama, Takahiro. "Crystallography of three-dimensional fluid flows with chirality in hexagonal cases." Acta Crystallographica Section A Foundations and Advances 75, no. 6 (2019): 798–813. http://dx.doi.org/10.1107/s205327331901146x.

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Magnetic groups are applied to three-dimensional fluid flows with chirality, which are called Beltrami flows (or force-free fields in plasma physics). First, six Beltrami flows are derived so that their symmetries and antisymmetries are described by six different hexagonal magnetic groups. The general Wyckoff positions are used to derive the flows. Special Wyckoff positions are shown to be useful for finding the zero points of the flows. Tube-like surfaces called invariant tori are observed to interlace and form various crystal-like structures when streamlines winding around the surfaces are numerically plotted. Next, two simpler hexagonal Beltrami flows are derived, and their zero points and invariant tori are studied. Some families of the invariant tori have arrangements similar to those observed in materials science.
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Bartashevich, Ekaterina, Adam Stash, Irina Yushina, et al. "Bonding features in Appel's salt from the orbital-free quantum crystallographic perspective." Acta Crystallographica Section B Structural Science, Crystal Engineering and Materials 77, no. 4 (2021): 478–87. http://dx.doi.org/10.1107/s2052520621005928.

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Bonding properties in the crystal of 4,5-dichloro-l,2,3-dithiazolium chloride (Appel's salt) were studied using a combination of single-crystal high-resolution X-ray diffraction data and the orbital-free quantum crystallography approach. A QTAIM-based topological model shows the proximity of S—C and S—N bonds to the sesquialteral type and establishes the low S—S bond order in the l,2,3-dithiazolium heterocycle. It is found that the electrostatic potential carries the traces of a common positive area on the junction of interatomic zero-flux surfaces of S1 and S2 atomic basins; meanwhile the exchange energy density per particle shows perfectly here two separate minima through which the two bond paths run. Thus, the pair intermolecular interactions Cl−...S1 and Cl−...S2 formed by the common chloride anion placed near the center of the S—S bond are categorized as chalcogen bonds.
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Staritzbichler, Rene, Nikola Ristic, Andrean Goede, Robert Preissner, and Peter W. Hildebrand. "Voronoia 4-ever." Nucleic Acids Research 49, W1 (2021): W685—W690. http://dx.doi.org/10.1093/nar/gkab466.

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Abstract We present an updated version of the Voronoia service that enables fully automated analysis of the atomic packing density of macromolecules. Voronoia combines previous efforts to analyse 3D protein and RNA structures into a single service, combined with state-of-the-art online visualization. Voronoia uses the Voronoi cell method to calculate the free space between neighbouring atoms to estimate van der Waals interactions. Compared to other methods that derive van der Waals interactions by calculating solvent-free surfaces, it explicitly considers volume or packing defects. Large internal voids refer either to water molecules or ions unresolved by X-ray crystallography or cryo-EM, cryptic ligand binding pockets, or parts of a structural model that require further refinement. Voronoia is, therefore mainly used for functional analyses of 3D structures and quality assessments of structural models. Voronoia 4-ever updates the database of precomputed packing densities of PDB entries, allows uploading multiple structures, adds new filter options and facilitates direct access to the results through intuitive display with the NGL viewer. Voronoia is available at: htttp://proteinformatics.org/voronoia.
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Lin, H., and D. P. Pope. "Slip traces caused by plastic deformation during recrystallization of thin metal sheets." Proceedings, annual meeting, Electron Microscopy Society of America 52 (1994): 620–21. http://dx.doi.org/10.1017/s0424820100170839.

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During a study of mechanical properties of recrystallized B-free Ni3Al single crystals, regularly spaced parallel traces within individual grains were discovered on the surfaces of thin recrystallized sheets, see Fig. 1. They appeared to be slip traces, but since we could not find similar observations in the literature, a series of experiments was performed to identify them. We will refer to them “traces”, because they contain some, if not all, of the properties of slip traces. A variety of techniques, including the Electron Backscattering Pattern (EBSP) method, was used to ascertain the composition, geometry, and crystallography of these traces. The effect of sample thickness on their formation was also investigated.In summary, these traces on the surface of recrystallized Ni3Al have the following properties:1.The chemistry and crystallographic orientation of the traces are the same as the bulk. No oxides or other second phases were observed.2.The traces are not grooves caused by thermal etching at previous locations of grain boundaries.3.The traces form after recrystallization (because the starting Ni3Al is a single crystal).4.For thicknesses between 50 μm and 720 μm, the density of the traces increases as the sample thickness decreases. Only one set of “protrusion-like” traces is visible in a given grain on the thicker samples, but multiple sets of “cliff-like” traces are visible on the thinner ones (See Fig. 1 and Fig. 2).5.They are linear and parallel to the traces of {111} planes on the surface, see Fig. 3.6.Some of the traces terminate within the interior of the grains, and the rest of them either terminate at or are continuous across grain boundaries. The portion of latter increases with decreasing thickness.7.The grain size decreases with decreasing thickness, the decrease is more pronounced when the grain size is comparable with the thickness, Fig. 4.8.Traces also formed during the recrystallization of cold-rolled polycrystalline Cu thin sheets, Fig. 5.
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Tykarska, Ewa, and Maria Gdaniec. "Solid-state supramolecular architecture of carbenoxolone – comparative studies with glycyrrhetinic and glycyrrhizic acids." Acta Crystallographica Section B Structural Science, Crystal Engineering and Materials 71, no. 1 (2015): 25–33. http://dx.doi.org/10.1107/s2052520614026419.

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Carbenoxolone (CBXH2), a pharmaceutically relevant derivative of glycyrrhetinic acid, was studied by X-ray crystallography. The crystal structures of its unsolvated form, propionic acid and dimethoxyethane solvates and a solvated cocrystal of the free acid with its monobasic sodium salt CBXH2·CBXHNa·(butan-2-one)2·2H2O reveal that the recurring motif of supramolecular architecture in all crystal forms is a one-dimensional ribbon with closely packed triterpene fragments. It does not result from strong specific interactions but solely from van der Waals interactions. The ribbons are further arranged into diverse layer-type aggregates with a hydrophobic interior (triterpene skeletons) and hydrophilic surfaces covered with carboxylic/carboxylate groups. Solvent molecules included at the interface between the layers influence hydrogen-bonding interactions between the carbenoxolone molecules and organization of the ribbons within the layer. Comparison of crystal structures of carbenoxolone, glycyrrhizic acid and its aglycone–glycyrrhetinic acid have shown the impact of the size and hydrophilic character of the substituent at the triterpene C3 atom on the supramolecular architecture of these three closely related molecules.
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Krissinel, Eugene. "Stock-based detection of biological assemblies in PISA software." Acta Crystallographica Section A Foundations and Advances 70, a1 (2014): C1745. http://dx.doi.org/10.1107/s2053273314082540.

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PISA (Protein Interfaces, Surfaces and Assemblies) software from CCP4 remains a popular computational tool for the prediction of biological assemblies (complexes) from macromolecular crystallography data [1]. The method is based on the estimation of the dissociation free energy of predicted complexes, and reaches 90-95% correct results for the current content of the PDB. It was found that the probability of getting wrong predictions grows exponentially with the decrease in the dissociation free energy, reaching over 50% for complexes bound as weakly as few kcal/mol [2]. Among few reasons for this behaviour [2] is the fact that oligomeric state of weakly bound complexes is expected to vary in dependence of chemical environment, in particular, protein concentration. It has been noticed in multiple use cases, that a considerable share of disagreements between predicted and measured oligomeric states belongs to situations where the relation between experimental conditions and protein's working environment in the cell is unclear. We report further advance in PISA software, which allows a researcher to model concentration dependence of predicted oligomeric states, and by this to improve interpretation of both experiments and computations in the biologically interesting case of weakly bound macromolecular associations. The new PISA is based on the concept of assembly stock, which represents an equilibrated set of of all complexes, compatible with crystal packing. Graphical representation of concentration (or newly introduced aggregation index) profiles of stock's components allows a user to quickly identify the most probable oligomeric state. This is vastly superior over the previous way of analysis, based on the interpretation of bare figures for dissociation free energies. Other developments include advanced graphical interface and multi-parametric interaction radar, which indicates the likelihood for interface to represent a biologically-relevant interaction.
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Wang, Yuning, Roya Tadayon, Liliana Santamaria, Pascal Mercier, Chantal J. Forristal, and Gary S. Shaw. "Calcium binds and rigidifies the dysferlin C2A domain in a tightly coupled manner." Biochemical Journal 478, no. 1 (2021): 197–215. http://dx.doi.org/10.1042/bcj20200773.

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The membrane protein dysferlin (DYSF) is important for calcium-activated plasma membrane repair, especially in muscle fibre cells. Nearly 600 mutations in the DYSF gene have been identified that are causative for rare genetic forms of muscular dystrophy. The dysferlin protein consists of seven C2 domains (C2A–C2G, 13%–33% identity) used to recruit calcium ions and traffic accessory proteins and vesicles to injured membrane sites needed to reseal a wound. Amongst these, the C2A is the most prominent facilitating the calcium-sensitive interaction with membrane surfaces. In this work, we determined the calcium-free and calcium-bound structures of the dysferlin C2A domain using NMR spectroscopy and X-ray crystallography. We show that binding two calcium ions to this domain reduces the flexibility of the Ca2+-binding loops in the structure. Furthermore, calcium titration and mutagenesis experiments reveal the tight coupling of these calcium-binding sites whereby the elimination of one site abolishes calcium binding to its partner site. We propose that the electrostatic potential distributed by the flexible, negatively charged calcium-binding loops in the dysferlin C2A domain control first contact with calcium that promotes subsequent binding. Based on these results, we hypothesize that dysferlin uses a ‘calcium-catching’ mechanism to respond to calcium influx during membrane repair.
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Fisher, Nathan B., John C. Charbonneau, and Stephanie K. Hurst. "Rapid Creation of Three-Dimensional, Tactile Models from Crystallographic Data." Journal of Crystallography 2016 (August 14, 2016): 1–8. http://dx.doi.org/10.1155/2016/3054573.

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A method for the conversion of crystallographic information framework (CIF) files to stereo lithographic data files suitable for printing on three-dimensional printers is presented. Crystallographic information framework or CIF files are capable of being manipulated in virtual space by a variety of computer programs, but their visual representations are limited to the two-dimensional surface of the computer screen. Tactile molecular models that demonstrate critical ideas, such as symmetry elements, play a critical role in enabling new students to fully visualize crystallographic concepts. In the past five years, major developments in three-dimensional printing has lowered the cost and complexity of these systems to a level where three-dimensional molecular models may be easily created provided that the data exists in a suitable format. Herein a method is described for the conversion of CIF file data using existing free software that allows for the rapid creation of inexpensive molecular models. This approach has numerous potential applications in basic research, education, visualization, and crystallography.
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Hara, Hideyuki, Yasuhisa Sano, Hidekazu Mimura, et al. "Damage-Free Planarization of 4H-SiC (0001) by Catalyst-Referred Etching." Materials Science Forum 556-557 (September 2007): 749–51. http://dx.doi.org/10.4028/www.scientific.net/msf.556-557.749.

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We report the damage-free planarization of 4H-SiC (0001) wafers using a new planarization technique we named CAtalyst-Referred Etching (CARE). The CARE setup equipped with a polishing pad made of a catalyst is almost the same as a lapping setup. Since the catalyst generates reactive species that activate only when they are next to the catalyst surface, SiC can be chemically removed in contact with the catalyst surface with a pressure noticeably lower than that in a conventional polishing process. The processed surfaces were observed by optical interferometry and AFM. These observations presented a marked reduction in surface roughness. A step-terrace structure was observed with a step height of approximately 3み, corresponding to one-bilayer thickness of Si and C, in the AFM images. To estimate the crystallographic properties of the CARE-processed surface, the surfaces were observed by cross-sectional TEM. The TEM images showed that a more crystallographically well-ordered surface was realized in comparison with the conventional CMP-processed surface.
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Dissertations / Theses on the topic "Free surfaces (Crystallography)"

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Sumner, Loren Bryan Stout. "Energy stability of thermocapillary convection in liquid bridges with a deformed free surface." Diss., Georgia Institute of Technology, 1998. http://hdl.handle.net/1853/17140.

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Patitsas, Stathis Nikos. "Electron wavefunctions at crystal interfaces." Thesis, University of British Columbia, 1990. http://hdl.handle.net/2429/29738.

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A one dimensional analysis of the boundary conditions of the electron energy eigenfunc-tion at a sharp interface between two crystals was made. An attempt to evaluate these conditions in terms of known band structure was made. It was concluded that this cannot be done in general. It was shown, however, that if the interface has the proper symmetry properties, the boundary conditions can be expressed in terms of only one unknown, energy-dependent parameter. It was concluded that setting this parameter equal to one gives boundary conditions which, though more general, are equivalent to the commonly used effective mass boundary conditions when they are applicable. It was concluded from numerical results for the transmission coefficient of the symmetric interface, that in general, these boundary conditions, which depend only on known band structure, do not give a good approximation to the exact answer. Since the energy dependence of the parameter mentioned above is described quite well qualitatively using the nearly free electron approximation or the tight-binding approximation, the applicability of any boundary conditions depending only on band structure can be predicted using these simple theories. The exact numerical results were calculated using the transfer matrix method. It was also concluded that the presence of symmetry in the interface either maximizes or minimizes the transmission coefficient. A tight-binding calculation showed that the transmission coefficient depends on an interface parameter which is independent of band structure. The transmission coefficient is maximized when this parameter is ignored. It was concluded that the effective mass equation is of little use when applied to this problem. Some transfer matrix results pertaining to the barrier and the superlattice were obtained.<br>Science, Faculty of<br>Physics and Astronomy, Department of<br>Graduate
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Books on the topic "Free surfaces (Crystallography)"

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Boswell, Frank W. Advances in the Crystallographic and Microstructural Analysis of Charge Density Wave Modulated Crystals. Springer Netherlands, 1999.

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Book chapters on the topic "Free surfaces (Crystallography)"

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Zolnikov, Konstantin P., Dmitrij S. Kryzhevich, and Aleksandr V. Korchuganov. "Regularities of Structural Rearrangements in Single- and Bicrystals Near the Contact Zone." In Springer Tracts in Mechanical Engineering. Springer International Publishing, 2020. http://dx.doi.org/10.1007/978-3-030-60124-9_14.

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AbstractThe chapter is devoted to the analysis of the features of local structural rearrangementsin nanostructured materialsunder shear loadingand nanoindentation. The study was carried out using molecular dynamics-based computer simulation. In particular, we investigated the features of symmetric tilt grain boundary migration in bcc and fcc metals under shear loading. The main emphasis was on identifying atomic mechanisms responsible for the migration of symmetric tilt grain boundaries. We revealed that grain boundaries of this type can move with abnormally high velocities up to several hundred meters per second. The grain boundary velocity depends on the shear rate and grain boundary structure. It is important to note that the migration of grain boundary does not lead to the formation of structural defects. We showed that grain boundary moves in a pronounced jump-like manner as a result of a certain sequence of self-consistent displacements of grain boundary atomic planes and adjacent planes. The number of atomic planes involved in the migration process depends on the structure of the grain boundary. In the case of bcc vanadium, five planes participate in the migration of the Σ5(210)[001] grain boundary, and three planes determine the Σ5(310)[001] grain boundary motion. The Σ5(310)[001] grain boundary in fcc nickel moves as a result of rearrangements of six atomic planes. The stacking order of atomic planes participating in the grain boundary migration can change. A jump-like manner of grain boundary motion may be divided into two stages. The first stage is a long time interval of stress increase during shear loading. The grain boundary is motionless during this period and accumulates elastic strain energy. This is followed by the stage of jump-like grain boundary motion, which results in rapid stress drop. The related study was focused on understanding the atomic rearrangements responsible for the nucleation of plasticity near different crystallographic surfaces of fcc and bcc metals under nanoindentation. We showed that a wedge-shaped region, which consists of atoms with a changed symmetry of the nearest environment, is formed under the indentation of the (001) surface of the copper crystallite. Stacking faults arise in the (111) atomic planes of the contact zone under the indentation of the (011) surface. Their escape on the side free surface leads to a step formation. Indentation of the (111) surface is accompanied by nucleation of partial dislocations in the contact zone subsequent formation of nanotwins. The results of the nanoindentation of bcc iron bicrystal show that the grain boundary prevents the propagation of structural defects nucleated in the contact zone into the neighboring grain.
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Balla, Vamsi Krishna, Mitun Das, Someswar Datta, and Biswanath Kundu. "Articulating Biomaterials." In Biomedical Engineering. IGI Global, 2018. http://dx.doi.org/10.4018/978-1-5225-3158-6.ch038.

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This chapter examines the importance of surface characteristics such as microstructure, composition, crystallographic texture, and surface free energy in achieving desired biocompatibility and tribological properties thereby improving in vivo life of artificial articulating implants. Current implants often fail prematurely due to inadequate mechanical, tribological, biocompatibility, and osseointegration properties, apart from issues related to design and surgical procedures. For long-term in vivo stability, artificial implants intended for articulating joint replacement must exhibit long-term stable articulation surface without stimulating undesirable in vivo effects. Since the implant's surface plays a vital and decisive role in their response to biological environment, and vice versa, surface modification of implants assumes a significant importance. Therefore, overview on important surface modification techniques, their capabilities, properties of modified surfaces/implants are presented in the chapter. The clinical performance of surface modified implants and new surfaces for potential next-generation articulating implant applications are discussed at the end.
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Balla, Vamsi Krishna, Mitun Das, Someswar Datta, and Biswanath Kundu. "Articulating Biomaterials." In Processing Techniques and Tribological Behavior of Composite Materials. IGI Global, 2015. http://dx.doi.org/10.4018/978-1-4666-7530-8.ch009.

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This chapter examines the importance of surface characteristics such as microstructure, composition, crystallographic texture, and surface free energy in achieving desired biocompatibility and tribological properties thereby improving in vivo life of artificial articulating implants. Current implants often fail prematurely due to inadequate mechanical, tribological, biocompatibility, and osseointegration properties, apart from issues related to design and surgical procedures. For long-term in vivo stability, artificial implants intended for articulating joint replacement must exhibit long-term stable articulation surface without stimulating undesirable in vivo effects. Since the implant's surface plays a vital and decisive role in their response to biological environment, and vice versa, surface modification of implants assumes a significant importance. Therefore, overview on important surface modification techniques, their capabilities, properties of modified surfaces/implants are presented in the chapter. The clinical performance of surface modified implants and new surfaces for potential next-generation articulating implant applications are discussed at the end.
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Bokstein, Boris S., Mikhail I. Mendelev, and David J. Srolovitz. "Interfacial phenomena." In Thermodynamics and Kinetics in Materials Science. Oxford University Press, 2005. http://dx.doi.org/10.1093/oso/9780198528036.003.0008.

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An interface is a surface across which the phase changes. Interfaces must be present in all heterogeneous systems, such as those discussed above. Interfacial properties necessarily differ from those of the bulk phases since the atomic bonding/structure of an interface represents a compromise between those of the phases on either side of the interface. For example, an atom at a free surface, which is an interface between a condensed phase and a gas (or a vacuum), generally has fewer neighbors with which to bond than it would have if it were in the bulk, condensed phase. In an equilibrium multi-component system, the chemical potential of each species must be the same in all phases, as well as at the interface. Not surprisingly, the chemical composition of the interface will, in general, differ from that of the bulk. For example, molecules in a gas (or solute in a condensed phase) can adsorb (segregate) onto the surface (interface) of a condensed phase. Interfacial processes play important roles in all areas of materials science and in many (most) areas of modern technology. As the trend toward miniaturization in microelectronics continues and interest in nanoscale structures grows, interfacial phenomena will become even more important. Clearly, the ratio of the number of atoms at surfaces and interfaces to those in the bulk grows as system size decreases (70% of the atoms in a nanometer diameter particle are on a surface!). Therefore, the thermodynamic properties of a system become increasingly dominated by interfacial properties as the dimensions of the system shrink. We can distinguish several types of interfaces: solid–liquid, liquid–gas, solid–gas, solid phase α–solid phase β, and grain boundaries. The meaning of the first four types of interface is self-explanatory. Grain boundaries represent a special class of interfaces; interfaces across which the phase does not change. What does change abruptly across this interface is the spatial orientation of the crystallographic axes. Most crystalline materials are polycrystalline, which means that they are composed of a large number of grains, each with a unique crystallographic orientation with respect to some laboratory frame of reference.
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Stum, E. A., and T. Gleichmann. "Soaking Techniques." In Crystallization of Nucleic Acids and Proteins. Oxford University Press, 1999. http://dx.doi.org/10.1093/oso/9780199636792.003.0017.

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Once crystals of a macromolecule are obtained there are many circumstances where it is necessary to change the environment in which the macromolecule is bathed. Such changes include the addition of inhibitors, activators, substrates, products, cryo-protectants, and heavy atoms to the bathing solution to achieve their binding to the macromolecule, which may have sufficient freedom to undergo some conformational changes in response to these effectors. In fact, macromolecular crystals have typically a high solvent content which ranges from 27-95% (1, 2). Although, part of this solvent, ‘bound solvent’ (typically 10%) is tightly associated with the protein matrix consisting of both water molecules and other ions that occupy well defined positions in refined crystal structure it can be replaced in soaking experiments, at a slower rate compared to the ‘free solvent’. In this chapter we will consider the relative merits of various methods for modifying crystals, the restraints that the lattice may impose on the macromolecule, and the relative merits of soaking compared to co-crystallization. The size and configuration of the channels within the lattice of macromolecular crystals will determine the maximum size of the solute molecules that may diffuse in. The solvent channels are sufficiently large to allow for the diffusion of most small molecules to any part of the surface of the macromolecule accessible in solution except for the regions involved in crystal contacts, although in some cases lattice forces may hinder conformational changes or rearrangements of the macromolecule in crystal. In other cases, the forces that drive the conformational changes can be sufficient to overcome the constraints imposed by the crystalline lattice leading to the disruption of intermolecular and crystal contacts resulting in the cracking and dissolution of the crystals. Some lattices may be more flexible and capable of accommodating conformational changes, and while crystals may crack initially, they may subsequently anneal into a new rearrangement and occasionally improve their crystallinity. In general small changes are easily accommodated and many macromolecules maintain their activity in the crystalline state. This is exploited in time-resolved crystallography to obtain structural information of transition states of enzymes.
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Conference papers on the topic "Free surfaces (Crystallography)"

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Wang, Zhiyu, Christopher Saldana, and Saurabh Basu. "Subsurface Microstructure and Crystallographic Texture in Surface Severe Plastic Deformation Processes." In ASME 2017 12th International Manufacturing Science and Engineering Conference collocated with the JSME/ASME 2017 6th International Conference on Materials and Processing. American Society of Mechanical Engineers, 2017. http://dx.doi.org/10.1115/msec2017-2915.

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Severe plastic burnishing was investigated as a promising surface severe plastic deformation technique for generating gradient microstructure surfaces. The deformed state of oxygen free high conductivity copper workpieces during the surface deformation process was determined with high-speed imaging, this complemented by microstructure characterization using orientation image microscopy based on electron backscatter diffraction. Varying deformation levels in terms of both magnitude and gradient on the processed surface were achieved through control of the incident tool angle. Refined microstructures, including laminate grains elongated in the velocity direction and equiaxed sub-micron grains were observed in the subsurface and were found to be controlled by the combined effects of strain and strain rate in the surface deformation process. Additionally, crystallographic texture evolutions were characterized, showing typical shear textures predominately along the &lt;110&gt; partial fiber. The rotation of texture from original ideal orientation positions was related directly to the deformation history produced by sliding process. Based on these observations, a controllable framework for producing the processed surface with expected mechanical and microstructural responses is suggested.
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Gomes, Carlos J., Marcela Madrid, and Cristina H. Amon. "Thin Film In-Plane Silicon Thermal Conductivity Dependence on Molecular Dynamics Surface Boundary Conditions." In ASME 2004 International Mechanical Engineering Congress and Exposition. ASMEDC, 2004. http://dx.doi.org/10.1115/imece2004-62264.

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The in-plane thermal conductivity of thin silicon films is predicted using equilibrium molecular dynamics, the Stillinger-Weber potential and the Green-Kubo relationship. Film thicknesses range from 2 to 200 nm. Periodic boundary conditions are used in the directions parallel to the thin film surfaces. Two different strategies are evaluated to treat the atoms on the surfaces perpendicular to the thin film direction: adding four layers of atoms kept frozen at their crystallographic positions, or restraining the atoms near the surfaces with a repulsive potential. We show that when the thin-film thickness is smaller than the phonon mean free path, the predictions of the in-plane thermal conductivity at 1000K differ significantly depending on the potential applied to the atoms near the surfaces. In this limit, the experimentally observed trend of decreasing thermal conductivity with decreasing film thickness is predicted when the surface atoms are subject to a repulsive potential in addition to the Stillinger-Weber potential, but not when they are limited by frozen atoms.
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Subramanian, Swaminathan, Khiem Ly, and Tony Chrastecky. "Cross-Section Sample Preparation Method for Imaging Dopant Related Anomalies Using Scanning Probe Microscopy Techniques." In ISTFA 2014. ASM International, 2014. http://dx.doi.org/10.31399/asm.cp.istfa2014p0519.

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Abstract Visualization of dopant related anomalies in integrated circuits is extremely challenging. Cleaving of the die may not be possible in practical failure analysis situations that require extensive electrical fault isolation, where the failing die can be submitted of scanning probe microscopy analysis in various states such as partially depackaged die, backside thinned die, and so on. In advanced technologies, the circuit orientation in the wafer may not align with preferred crystallographic direction for cleaving the silicon or other substrates. In order to overcome these issues, a focused ion beam lift-out based approach for site-specific cross-section sample preparation is developed in this work. A directional mechanical polishing procedure to produce smooth damage-free surface for junction profiling is also implemented. Two failure analysis applications of the sample preparation method to visualize junction anomalies using scanning microwave microscopy are also discussed.
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