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Relevant bibliographies by topics / Fungal secondary metabolism

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Academic literature on the topic 'Fungal secondary metabolism'

Author: Grafiati

Published: 4 June 2021

Last updated: 14 February 2022

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Journal articles on the topic "Fungal secondary metabolism"

1

Brakhage, Axel A. "Regulation of fungal secondary metabolism." Nature Reviews Microbiology 11, no. 1 (November 26, 2012): 21–32. http://dx.doi.org/10.1038/nrmicro2916.

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Khalil, Zeinab G., Pabasara Kalansuriya, and Robert J. Capon. "Lipopolysaccharide (LPS) stimulation of fungal secondary metabolism." Mycology 5, no. 3 (July 3, 2014): 168–78. http://dx.doi.org/10.1080/21501203.2014.930530.

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Calvo, Ana M., Richard A. Wilson, Jin Woo Bok, and Nancy P. Keller. "Relationship between Secondary Metabolism and Fungal Development." Microbiology and Molecular Biology Reviews 66, no. 3 (September 2002): 447–59. http://dx.doi.org/10.1128/mmbr.66.3.447-459.2002.

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SUMMARY Filamentous fungi are unique organisms—rivaled only by actinomycetes and plants—in producing a wide range of natural products called secondary metabolites. These compounds are very diverse in structure and perform functions that are not always known. However, most secondary metabolites are produced after the fungus has completed its initial growth phase and is beginning a stage of development represented by the formation of spores. In this review, we describe secondary metabolites produced by fungi that act as sporogenic factors to influence fungal development, are required for spore viability, or are produced at a time in the life cycle that coincides with development. We describe environmental and genetic factors that can influence the production of secondary metabolites. In the case of the filamentous fungus Aspergillus nidulans, we review the only described work that genetically links the sporulation of this fungus to the production of the mycotoxin sterigmatocystin through a shared G-protein signaling pathway.

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Keller, Nancy P., Geoffrey Turner, and Joan W. Bennett. "Fungal secondary metabolism — from biochemistry to genomics." Nature Reviews Microbiology 3, no. 12 (December 2005): 937–47. http://dx.doi.org/10.1038/nrmicro1286.

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Yin, Wenbing, and Nancy P. Keller. "Transcriptional regulatory elements in fungal secondary metabolism." Journal of Microbiology 49, no. 3 (June 2011): 329–39. http://dx.doi.org/10.1007/s12275-011-1009-1.

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Bennett, J. W. "From molecular genetics and secondary metabolism to molecular metabolites and secondary genetics." Canadian Journal of Botany 73, S1 (December 31, 1995): 917–24. http://dx.doi.org/10.1139/b95-339.

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Secondary metabolites constitute a huge array of low molecular weight natural products that cannot be easily defined. Largely produced by bacteria, fungi, and green plants, they tend to be synthesized after active growth has ceased, in families of similar compounds, often at the same time as species-specific morphological characters become apparent. Although, in many cases, the function that the secondary metabolite performs in the producing organism is unknown, the bioactivity of these compounds has been exploited since prehistoric times as drugs, poisons, food flavoring agents, and so forth. In fungi, the polyketide family is the largest known group of secondary metabolite compounds. Polyketides are synthesized from acetate by a mechanism analogous to fatty acid biosynthesis but involving changes in oxidation level and stereochemistry during the chain-elongation process. The fungal polyketide biosynthetic pathways for aflatoxin and patulin have emerged as model systems. The use of blocked mutants has been an essential part of the research approach for both pathways. Molecular methods of studying fungal secondary metabolites were first used with penicillin and cephalosporin, both of which are amino acid derived. Most of the basic molecular work on polyketides was done with streptomycete-derived compounds; however, enough fungal data are now available to compare fungal and streptomycete polyketide synthases, as well as to map the genes involved in a number of polyketide pathways from both groups. The traditional dogma, derived from classical genetics, that genes for fungal pathways are unlinked, has been overturned. In addition, cloning of structural genes facilitates the formation of hybrid molecules, and we are on the brink of understanding certain regulatory functions. Key words: fungal metabolism, secondary metabolism, polyketide, β-lactam, product discovery.

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Calcott, Mark J., David F. Ackerley, Allison Knight, Robert A. Keyzers, and Jeremy G. Owen. "Secondary metabolism in the lichen symbiosis." Chemical Society Reviews 47, no. 5 (2018): 1730–60. http://dx.doi.org/10.1039/c7cs00431a.

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Lichens, which are defined by a symbiosis between a mycobiont (fungal partner) and a photobiont (photoautotrophic partner), are in fact complex assemblages of microorganisms that constitute a largely untapped source of bioactive secondary metabolites.

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Fox, Ellen M., and Barbara J. Howlett. "Secondary metabolism: regulation and role in fungal biology." Current Opinion in Microbiology 11, no. 6 (December 2008): 481–87. http://dx.doi.org/10.1016/j.mib.2008.10.007.

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Keller, Nancy P. "Fungal secondary metabolism: regulation, function and drug discovery." Nature Reviews Microbiology 17, no. 3 (December 10, 2018): 167–80. http://dx.doi.org/10.1038/s41579-018-0121-1.

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Chanda, A., L. V. Roze, S. Kang, K. A. Artymovich, G. R. Hicks, N. V. Raikhel, A. M. Calvo, and J. E. Linz. "A key role for vesicles in fungal secondary metabolism." Proceedings of the National Academy of Sciences 106, no. 46 (November 4, 2009): 19533–38. http://dx.doi.org/10.1073/pnas.0907416106.

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Dissertations / Theses on the topic "Fungal secondary metabolism"

1

Williams, Katherine. "Genetic manipulation of fungal secondary metabolism." Thesis, University of Bristol, 2010. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.535469.

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Delsol, Anne Aline Germaine. "Microbial 7-hydroxylation of the steroid lithocholic acid : a novel approach to produce bile acids for gallstone therapy." Thesis, University of Exeter, 1999. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.297640.

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Bakker, Walid Ismail Mohammed Mohammed. "Overexpression of secondary metabolism genes from Magnaporthe grisea and Beauveria bassiana speciality : fungal biotechnology." Thesis, University of Bristol, 2011. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.544416.

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Pfannenstiel, Brandon T., Xixi Zhao, Jennifer Wortman, Philipp Wiemann, Kurt Throckmorton, Joseph E. Spraker, Alexandra A. Soukup, et al. "Revitalization of a Forward Genetic Screen Identifies Three New Regulators of Fungal Secondary Metabolism in the Genus Aspergillus." AMER SOC MICROBIOLOGY, 2017. http://hdl.handle.net/10150/626452.

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The study of aflatoxin in Aspergillus spp. has garnered the attention of many researchers due to aflatoxin's carcinogenic properties and frequency as a food and feed contaminant. Significant progress has been made by utilizing the model organism Aspergillus nidulans to characterize the regulation of sterigmatocystin (ST), the penultimate precursor of aflatoxin. A previous forward genetic screen identified 23 A. nidulans mutants involved in regulating ST production. Six mutants were characterized from this screen using classical mapping (five mutations in mcsA) and complementation with a cosmid library (one mutation in laeA). The remaining mutants were backcrossed and sequenced using Illumina and Ion Torrent sequencing platforms. All but one mutant contained one or more sequence variants in predicted open reading frames. Deletion of these genes resulted in identification of mutant alleles responsible for the loss of ST production in 12 of the 17 remaining mutants. Eight of these mutations were in genes already known to affect ST synthesis (laeA, mcsA, fluG, and stcA), while the remaining four mutations (in laeB, sntB, and hamI) were in previously uncharacterized genes not known to be involved in ST production. Deletion of laeB, sntB, and hamI in A. flavus results in loss of aflatoxin production, confirming that these regulators are conserved in the aflatoxigenic aspergilli. This report highlights the multifaceted regulatory mechanisms governing secondary metabolism in Aspergillus. Additionally, these data contribute to the increasing number of studies showing that forward genetic screens of fungi coupled with whole-genome resequencing is a robust and cost-effective technique. IMPORTANCE In a postgenomic world, reverse genetic approaches have displaced their forward genetic counterparts. The techniques used in forward genetics to identify loci of interest were typically very cumbersome and time-consuming, relying on Mendelian traits in model organisms. The current work was pursued not only to identify alleles involved in regulation of secondary metabolism but also to demonstrate a return to forward genetics to track phenotypes and to discover genetic pathways that could not be predicted through a reverse genetics approach. While identification of mutant alleles from whole-genome sequencing has been done before, here we illustrate the possibility of coupling this strategy with a genetic screen to identify multiple alleles of interest. Sequencing of classically derived mutants revealed several uncharacterized genes, which represent novel pathways to regulate and control the biosynthesis of sterigmatocystin and of aflatoxin, a societally and medically important mycotoxin.

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Waldenmaier, Hans Eugene. "Bioluminescência fúngica: papel ecológico, purificação e clonagem de enzimas." Universidade de São Paulo, 2016. http://www.teses.usp.br/teses/disponiveis/46/46131/tde-14072017-145527/.

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Esta tese de doutorado descreve os estudos realizados para elucidar a biologia molecular da bioluminescência fúngica e sua relevância ecológica na natureza. A recente descoberta de que a luciferina fúngica é a 3-hidroxihispidina permitiu a caracterização do metabolismo secundário da fenilalanina nos genomas recém-sequenciados e transcriptomas de micélios das espécies luminescentes Panellus stipticus e Neonothopanus gardneri. Adicionalmente os genomas e transcriptomas de variedades não luminescente de P. stipticus e Lentinula edodes serviram como respectivos controles. Em geral, os genes envolvidos no metabolismo secundário da fenilalanina em amostras luminescentes tinham expressão igual ou superior àquela de espécies não luminescentes. Um agrupamento de genes relacionados com a biossíntese de fenilalanina foi encontrado em ambos os genomas luminescentes e não luminescentes de P. stipticus. A abundância de genes transcritos neste agrupamento foi semelhante para as espécies luminescentes e não luminescentes de P. stipticus, mas a policetídeo sintase tipo I em P. stipticus não luminescentes foi significativamente sub-regulada. Não foi encontrado agrupamento semelhante nos genomas de N. gardneri e L. edodes, sendo que os correspondentes homólogos estavam espalhados em diferentes loci. Extratos de fungos podem ser preparados in vitro, com a adição de 3-hidroxihispidina para produzir luz verde em abundância. A preparação de extratos proteicos de luciferase foi melhorada e a estrutura da luciferase, parcialmente purificada, foi investigada por espectrometria de massas. A presença de luciferase nos géis de purificação foi revelada usando-se luciferina e molécula similares à luciferina advindas de extratos de plantas. O nicho ecológico nas vizinhas de cogumelos bioluminescentes foi investigado de duas maneiras, armadilhas adesivas com cogumelos artificiais de acrílico, iluminados com luz LED verde e através da observação direta de cogumelos bioluminescentes com fotografia no infravermelho com lapso de tempo. Os estudos ecológicos foram conduzidos nos biomas da Mata Atlântica e da Mata dos Cocais, no Brasil. Baratas, aranhas, tesourinhas, grilo e vagalumes tec-tecs foram os animais mais comuns que interagiram com os cogumelos. Todos estes animais podem agir como dispersores de propágulos e, em alguns casos, como defensores dos cogumelos.
This PhD thesis describes the studies performed to elucidate the molecular biology of fungal bioluminescence and the ecological significance of the trait in the wild. The recent discovery that the fungal luciferin is 3-hydroxyhispidin has allowed for the characterization of phenylalanine secondary metabolism in the newly sequenced genomes and mycelium transcriptomes of luminescent Panellus stipticus and Neonothopanus gardneri, additionally the genomes and transcriptomes of a non-luminescent variety of P. stipticus and Lentinula edodes served as respective controls. In general the genes involved in phenylalanine secondary metabolism had greater or equal expression in luminescent samples than non luminescent. A cluster of genes related to the secondary metabolism of phenylalanine was found in both luminescent and non luminescent P. stipticus genomes. Transcript abundance of genes in this cluster was similar in both luminescent and non-luminescent Panellus stipticus, but the type I polyketide synthase in non luminescent Panellus stipticus was significantly down regulated. A similar gene cluster in the N. gardneri and L. edodes genomes was absent with corresponding homologues scattered at different genomic loci. Cell free fungal extracts can be combined in vitro with the addition of 3-hydroxyhispidin to produce abundant green light. Preparation of proteinaceous luciferase extracts was improved and partially purified luciferase samples were investigated by mass spectrometry. The presence of luciferase in the separation gel was also evidenced by using luciferin and luciferin-like molecules from plant extracts. The ecological niche surrounding bioluminescent mushrooms was investigated through two main means, glue traps with acrylic mushroom facsimiles that were internally illuminated with green LED lights and direct observation of bioluminescent mushrooms with infrared time lapse photography. Ecological studies were performed in the Atlantic rainforest (Mata Atlântica) and transitional Coconut Palm forest (Mata dos Cocais) biomes of Brazil. Cockroaches, spiders, earwigs, crickets, and luminescent click beetles were the most common animal interacting with mushrooms. All of these animals may be acting as fungal propagule dispersers and in some cases defense of the mushroom.

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Meister, Cindy [Verfasser], Gerhard H. [Akademischer Betreuer] Braus, Gerhard H. [Gutachter] Braus, Kai [Gutachter] Tittmann, and Achim [Gutachter] Dickmanns. "Interplay of the COP9 signalosome deneddylase and the UspA deubiquitinase to coordinate fungal development and secondary metabolism / Cindy Meister ; Gutachter: Gerhard H. Braus, Kai Tittmann, Achim Dickmanns ; Betreuer: Gerhard H. Braus." Göttingen : Niedersächsische Staats- und Universitätsbibliothek Göttingen, 2019. http://d-nb.info/1187520330/34.

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Maertens, Jeroen Moritz. "Reconstruction of fungal secondary metabolite biosynthetic pathways in Aspergillus oryzae." Thesis, University of Bristol, 2016. https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.738201.

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Turner, Adrian Simon. "An investigation into the switch between primary and secondary metabolism in Cephalosporium acremonium." Thesis, University of Liverpool, 1994. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.240785.

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Kim, Kwang Hyung. "Functional Analysis of Secondary Metabolite Biosynthesis-Related Genes in Alternaria brassicicola." Diss., Virginia Tech, 2009. http://hdl.handle.net/10919/39452.

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Alternaria brassicicola is a necrotrophic pathogen that causes black spot disease on virtually all cultivated Brassicas, A. brassicicola is renowned for its ability to prodigiously produce secondary metabolites. To test the hypothesis that secondary metabolites produced by A. brassicicola contribute to pathogenicity, we identified seven nonribosomal peptide synthetases (NPSs) and 10 polyketide synthases (PKSs) in the A. brassicicola genome. The phenotype resulting from knockout mutations of each PKS and NPS gene was investigated with an emphasis on discovery of fungal virulence factors. A highly efficient gene disruption method using a short linear double stranded DNA construct with minimal elements was developed, optimized, and used to functionally disrupt all NPS and PKS genes in A. brassicicola. Three NPS and two PKS genes, and one NPS-like gene appeared to be virulence factors based upon reduced lesion development of each mutant on inoculated green cabbage and Arabidopsis compared with the wild-type strain. Furthermore some of the KO mutants exhibited developmental phenotypic changes in pigmentation and conidiogenesis. To further characterize the roles of several genes of interest in A. brassicicola development and pathogenesis, the genes AbNPS2, AbPKS9, and NPS-like tmpL were selected for in-depth functional analysis. We provide substantial evidence that the AbNPS2-associated metabolite is involved in conidial cell wall construction, possibly as an anchor connecting two cell wall layers. We also characterized a biosynthetic gene cluster harboring the AbPKS9 gene and demonstrated that this cluster is responsible for the biosynthesis of depudecin, an inhibitor of histone deacetylases and a minor virulence factor. Finally, we demonstrated that a NPS-like protein named TmpL is involved in a filamentous fungi-specific mechanism for regulating levels of intracellular reactive oxygen species during conidiation and pathogenesis in both plant and animal pathogenic fungi. Collectively our results indicate that small molecule nonribosomal peptides and polyketides in A. brassicicola play diverse, but also fundamental, roles in fungal development and pathogenesis.
Ph. D.

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Kutil, Brandi Lynn. "The evolution of LOL, the secondary metabolite gene cluster for insecticidal loline alkaloids in fungal endophytes of grasses." Thesis, [College Station, Tex. : Texas A&M University, 2006. http://hdl.handle.net/1969.1/ETD-TAMU-1122.

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Books on the topic "Fungal secondary metabolism"

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Keller, Nancy P., and Geoffrey Turner, eds. Fungal Secondary Metabolism. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-122-6.

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A, Schweikert Milbra, and Jarvis Bruce B, eds. Handbook of secondary fungal metabolites. Amsterdam: Academic, 2003.

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Fungal Secondary Metabolism Methods in Molecular Biology Hardcover. Humana Press, 2012.

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Rodrigues, Fernando, Laure Ries, Chengshu Wang, and Koon Ho Wong, eds. Fungal Primary and Secondary Metabolism and its Importance for Virulence and Biomedical Applications. Frontiers Media SA, 2021. http://dx.doi.org/10.3389/978-2-88966-889-2.

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Book chapters on the topic "Fungal secondary metabolism"

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Sanchez, James F., and Clay C. C. Wang. "The Chemical Identification and Analysis of Aspergillus nidulans Secondary Metabolites." In Fungal Secondary Metabolism, 97–109. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-122-6_6.

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Pomraning, Kyle R., Kristina M. Smith, Erin L. Bredeweg, Lanelle R. Connolly, Pallavi A. Phatale, and Michael Freitag. "Library Preparation and Data Analysis Packages for Rapid Genome Sequencing." In Fungal Secondary Metabolism, 1–22. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-122-6_1.

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Oakley, C. Elizabeth, Heather Edgerton-Morgan, and Berl R. Oakley. "Tools for Manipulation of Secondary Metabolism Pathways: Rapid Promoter Replacements and Gene Deletions in Aspergillus nidulans." In Fungal Secondary Metabolism, 143–61. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-122-6_10.

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Bok, Jin Woo, and Nancy P. Keller. "Fast and Easy Method for Construction of Plasmid Vectors Using Modified Quick-Change Mutagenesis." In Fungal Secondary Metabolism, 163–74. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-122-6_11.

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Park, Hee Soo, and Jae-Hyuk Yu. "Multi-Copy Genetic Screen in Aspergillus nidulans." In Fungal Secondary Metabolism, 183–90. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-122-6_13.

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Bayram, Özgür, Özlem Sarikaya Bayram, Oliver Valerius, Bastian Jöhnk, and Gerhard H. Braus. "Identification of Protein Complexes from Filamentous Fungi with Tandem Affinity Purification." In Fungal Secondary Metabolism, 191–205. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-122-6_14.

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Forseth, Ry R., and Frank C. Schroeder. "Correlating Secondary Metabolite Production with Genetic Changes Using Differential Analysis of 2D NMR Spectra." In Fungal Secondary Metabolism, 207–19. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-122-6_15.

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Boedi, Stefan, Yazmid Reyes-Dominguez, and Joseph Strauss. "Chromatin Immunoprecipitation Analysis in Filamentous Fungi." In Fungal Secondary Metabolism, 221–36. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-122-6_16.

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Batth, Tanveer S., Jay D. Keasling, and Christopher J. Petzold. "Targeted Proteomics for Metabolic Pathway Optimization." In Fungal Secondary Metabolism, 237–49. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-122-6_17.

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Jeong, Kwang Cheol, and Jae-Hyuk Yu. "Investigation of In Vivo Protein Interactions in Aspergillus Spores." In Fungal Secondary Metabolism, 251–57. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-122-6_18.

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Conference papers on the topic "Fungal secondary metabolism"

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Salimova, D. R., and A. O. Berestetskiy. "Secondary metabolite profiles and biological activity of extracts from various isolates fungi Alternaria sonchi depending on the composition of the liquid nutrient medium." In 2nd International Scientific Conference "Plants and Microbes: the Future of Biotechnology". PLAMIC2020 Organizing committee, 2020. http://dx.doi.org/10.28983/plamic2020.214.

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Phytopathogenic fungus A. sonchi is able to produce metabolites with insecticidal properties. The composition of the culture media affected the metabolite profiles of the extracts. The results of the assessment of biological activity allowed to divide the working isolates with phytotoxic and insecticidal activity.

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Zhang, Yi, Lixue Wen, Haiyan Bao, Yingying Nie, Yan Feng, and Zhilong Xiu. "Secondary Metabolism Variation of a Marine Fungus Following Treatment with Dielectric Barrier Discharge Plasma and Chemical Mutagens." In International Conference on Biomedical and Biological Engineering. Paris, France: Atlantis Press, 2016. http://dx.doi.org/10.2991/bbe-16.2016.40.

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