Academic literature on the topic 'Fynbos ecology – South Africa – Western Cape'

The private Grootbos Nature Reserve is located at the Western edge of the Agulhas Plain in the Cape Floristic Region of South Africa, an area characterized by high habitat and floristic diversity. The Reserve is covered in near-natural fynbos shrublands with a few patches of forest and wetland. The main objective of this study was to classify the vegetation into discrete units and relate them to the prevailing environmental conditions. The vegetation was analysed by numerical means (TWINSPAN, DC A, CCA) and mapped on GIS. At the vegetation type level. Forest Thicket and Fynbos formed distinctive clusters, whereas the wetland releves were intermixed, but without relationships to one of these units. Fire incidence served as the major determinant of the forest-fynbos boundary. The Forest Thicket grouping was separated into Thicket (as transitional to fynbos), Afromontane Forest and Milkwood Scrub Forest. Two broad complexes were distinguished within the Fynbos grouping, the Alkaline Sand Fynbos Complex corresponding to Coastal Fynbos. and the Acid Sand Fynbos Complex corresponding to Mountain Fynbos. They discriminated along gradients of pH. soil depth and rock cover. The complexes were further subdivided into formations by using one or a few subjectively chosen dominant species as indicators. The transitions between these formations were rather continuous than discrete. The vegetation type and complex levels correspond well to existing fynbos-wide classifications. Comparing the formations to the results of other vegetation studies is problematic even on the scale of the Agulhas Plain, due to the high regional plant diversity in the Fynbos Biome.

Oxalis L , commonly called sorrel,is a large and cosmopolitan taxon that has undergone spectacular speciation within southern Africa (± 270 taxa). and more specifically within the winter rainfall regions of the western Cape Region (CR). The main objective of this study w as to analyse the geographical distribution of Oxalis in South Africa in relation to currently defined phytogeographic units. The observed patterns of biodiversity and endemism within South African members of the genus show interesting disjunctions and concentrations of species. Oxalis is one of the few CR taxa that is shared between the core Fynbos and Succulent Karoo Biomes, and this study therefore provides a novel insight into evolutionary trends across, and not only w ithin. these phvtogeographic units. The major centre for diversity for Oxalis is situated on Table Mountain and the northern areas o f the Cape Peninsula (grid square 3318CD). Subsidiary centres are located in the Clanwilliam/Niewoudtville and Kamiesberg regions. The reported patterns in Western Cape suggest that Oxalis species richness has been generated and retained in areas w hich have been identified as core Fynbos (Table Mountain), Fynbos refugia during interglacials (Kamiesberg). and an ecotonal region which might switch between the two biome types (Clanwilliam/ Niewoudtville). Presumably these three types of areas would provide interesting material for DNA-based phylogenetic work, and a test of the climate change 'species-pump' hypothesis proposed by Midgley et al. (2001).

In terms of species-level diversity, the genus Crassula Linnaeus (1753: 282) is by far the most diverse in the Crassulaceae within the Flora of Southern Africa region [Namibia, Botswana, Eswatini (formerly Swaziland), Lesotho, South Africa] (Tölken 1977a, b, 1985). In this region diversity is highest in the Fynbos and Succulent Karoo Biomes, both of which straddle the southern Cape, an area represented in the Western and Eastern Cape provinces.

Three new annual species of Diascia Link Otto are described from the Western Cape Province of South Africa. D. collina is characterized by greyish magenta flowers with two divergent yellow sacs containing oil-secreting trichomes. It is restricted to granite outcrops in the vicinity of Saldanha Bay, from the West Coast National Park and Langebaan north to Vredenburg. D. pusilla is closely related to D. collina. but differs from that species in having smaller flowers with shorter, ± parallel sacs, and posticous filaments that lack a protuberance where they bend sharply backwards towards the upper lip. It occurs in grey to whitish sands usually near seasonally moist or wet areas. It has not been found more than 35 km from the coast and ranges from Modderrivier, south o f Darling, north to Lambert’s Bay. D. appendiculata is related to D. diffusa (Thunb.) Benth. and is characterized by having small, mainly reddish lilac to greyish magenta flowers, two shallow depressions in the corolla tube at the base of the upper lip, and posticous filaments with sterile appendages. It is known from only six localities in the general vicinity of Citrusdal and occurs in fynbos vegetation on lower mountain slopes or flats, in loose alluvial sands derived from Table Mountain Sandstone.

In Africa the Proteaceae are represented by 16 genera of which two (Dilobeia Thouars. and Malagasia L.Johnson and B.Briggs) are endemic to Madagascar and one (Faurea Harv.) is common to both Madagascar and Africa where it is widespread in forest and savannah woodland from the southern Cape to Eritrea. The remaining 13 genera are Cape-centred (10 are endemic to the western Cape) and with the exception of the monotypic riverine Brabejum L. (Grevilleoideae), are confined to fynbos (heathland) communities on oligotrophic soils. These 12 Cape heathland genera currently assigned to two subtribes (Proteinae and Aulacinae) within the subfamily Proteoideae have all been recently revised or are in the final stages of revision. Preliminary cladistic studies now suggest that they could be arranged in several new subtribes within the subfamily Proteoideae to reflect more accurately their phylogenetic relationships. Using morphological characters in a cladistic analysis, the South African Proteoideae (tribe Proteeae) resolve into two broad groups; Aulax Berg., Faurea Harv. and Protea L. form a weakly supported group while the second, large, well-supported group resolves into two clades in which the heterogeneous Leucadendron R.Br. stands apart while the other clade underpinned by Vexatorella Rourke resolves into two further groups, the ‘Leucospermum group’ and the ‘Serruria group’. The dioecious genera Leucadendron and Aulax previously united in the subtribe Aulacinae have been shown to differ markedly and should probably be placed in separate subtribes. Selection pressure, especially from fire and pollinators, has resulted in major morphological modifications in the 12 fynbos genera from the western Cape.

Pollen analysis of a core in Princess Vlei in the Fynbos Biome near Cape Town gives a 4150 year record of vegetation and climate changes followed by disturbance by colonial settlers since c. 300 years ago. Their impact replaced climate as a major factor in changing the vegetation. The chronology is based on eight radiocarbon dates. Pollen types such as Restionaceae, Ericaceae, and Proteaceae reflect changes in fynbos. Pollen indicators at the bottom of the core suggest drier conditions followed by an increase in Morella, Cyperaceae and Carpacoce pollen, which might indicate moist conditions c. 3400–2600 cal. yr BP. Drier conditions prevail c. 2600–1900 cal. yr BP. Apparent light disturbance after c. 2000 cal. yr BP might be attributed to Khoi herders. Deeper water and damp surroundings are indicated c. 1900–1000 cal. yr BP. The top of the core shows an increase of Poaceae while Restionaceae decrease with anthropogenic disturbance, including the introduction of neophytes such as Pinus ( c. 300 years ago) and Zea mays. Charcoal percentages point to intense fires after the arrival of the Europeans. Water between 105 and 75 cm indicates the development of a floating mat resulting from changes in the hydrological system possibly connected to disturbances by settlers.

The floristically complex vegetation of Matjiesrivier Nature Reserve (MNR). which spans the ecotone between the Fynbos and Succulent Karoo Biomes in the eastern Cederberg Mountains, Western Cape, was surveyed using a gradient-directed transect (gradsect). The gradsect was aligned with a topo-ciimatic aridity gradient across MNR. The vegetation was classified using TWINSPAN. based on a combination of floristic and growth form characteristics, and an understanding of the main ecological gradients controlling vegetation distribution. The final classification described seven robust and eco­logically meaningful communities that represented a trade-off between statistical rigour and practicality for management. The seven communities were mapped using a geographical information system (GIS).

The flora of the southern Langeberg is rich, w ith 1 228 species and intraspecific taxa (referred to collectively as species) recorded in 361 genera and 105 families. An analysis of the montane flora of the southern Langeberg. Western Cape, South Africa based on an annotated checklist shows that the Asteraceae has the highest number of species per familv (167) and the genus Erica has the most infrageneric taxa per genus (130) as well as the most endemic species (51). One endemic monotypic family, the Geissolomataceae, two endemic genera Geissoloma and Langebergia (Asteraceae) and a total of 167 endemic species are found on the southern Langeberg The plant families of the southern Langeberg flora are ranked according to species-richness of the families and compared with floras of other areas (mainly montane) in the Fynbos Biome and marginally to the east of this biome (the Amatole Mountains). The greatest similarity of ranking is evident betw een the plant families of the southern Langeberg and those of the Cape Hangklip Area.

The revegetation of severely, disturbed areas using indigenous vegetation forms the topic of this thesis. Mountain Fynbos was chosen for the study because of its importance as a unique vegetation-type worthy of conservation. Unfortunately, this vegetation faces long-term threats associated with escalating development pressures, which include the demand for improved infrastructures. These factors are discussed and a process is developed for using indigenous vegetation to revegetate severely disturbed areas. This use of indigenous vegetation represents a significant and innovative move away from the traditional use of commercially available grasses in South Africa. Fynbos is adapted to periodic droughts and nutrient poor soils and as such has practical advantages over artificial plant covers in terms of its low maintenance requirements for long term establishment. Theoretical perspectives of disturbance and succession are contrasted with the requirements for revegetation as observed in the field.

Thesis (MScConEcol)--Stellenbosch University, 2012.
ENGLISH ABSTRACT: Riparian ecotones, transitional areas between upland terrestrial communities and aquatic ecosystems, are very dynamic and complex ecosystems with intrinsic ecological properties differing in spatial structure, function and temporal dynamics. Riparian habitats along rivers of the Mediterranean south-western Cape are sensitive to environmental change and particularly vulnerable to invasion by invasive alien plants (IAPs), especially nitrogen-fixing Acacia spp., and yet relatively little work has focused on how riparian ecosystems in this region respond to such stressors. The important roles that intact riparian vegetation play in maintaining ecosystem integrity and services have been increasingly highlighted as we acknowledge the degradation of these habitats. While the Working for Water (WfW) programme has been shown to be very successful in eradicating IAPs in riparian zones in the short-term, the extent to which riparian ecosystems recover following alien clearing activities remains poorly understood. The results presented in this study addressed several different aspects of riparian structure and function and acts as a steppingstone for guiding future research and management in riparian zones by adding to the evaluation of the success of clearing initiatives and restoration thereof. The aim of this study was to assess plant functional type (PFT) cover, soil physical and chemical properties, and selected biogeochemical processes in natural, Acacia- invaded and cleared riparian ecotones and associated non-riparian upland fynbos. Fieldwork was performed in mountain and foothill sections of six perennial river systems within the south-western Cape. Eleven sites of three categories were chosen: four natural sites (uninvaded); four moderate to highly invaded sites (predominantly A. mearnsii); and three cleared sites (a formerly invaded site that had been cleared more than 7 years prior to the study). Within each site, four to five replicate plots were established along each of three geomorphological zones (wet bank, dry bank, and upland fynbos). Seasonal soil samples were collected for a period of one year. Results from this study showed that PFT cover and composition, soil physical and chemical properties and rates of nitrogen (N) and phosphorus (P) mineralization differed amongst invasion status, between geomorphological zones and across seasons. Regarding most soil physical and chemical properties and indices N and P cycling, river floodplains (dry banks) were very similar to terrestrial uplands. Acacia spp. changes soil properties and affects plant functional attributes by i) enriching the system with N; ii) enhancing litter inputs; iii) altering soil physical properties; iv) changing the composition and reducing the cover of PFT; and v) enhancing P mineralization rates. Although measured soil physical and chemical properties and N and P mineralization rates were reduced to levels that were similar to or resembled the situation at natural areas, available inorganic N remained two times higher after more than seven years of clearance. Furthermore, cleared areas were characterized by sparse woody cover and a high cover of alien grasses. Correlations between soil silt and clay content and several soil properties measured in this and other studies indicates important linkages between soil texture and resource availability. Clearing Acacia spp. may initiate restoration of invaded riparian ecosystems, but changes in ecosystem function (e.g. elevated soil N availability) as a result of invasion may necessitate active restoration following the removal of the alien species. Active restoration under such conditions would be required to facilitate the restoration of cleared riparian communities. However, we still lack the mechanistic understanding around fynbos riparian recovery after clearing, as the success of restoration may depend on complex interaction and feedback cycles between plants and their physical environment. A greater comprehensive understanding of fynbos riparian ecological processes will not only improve the effectiveness of restoration initiatives by integrating science and management, but also advance the field of riparian ecology.
AFRIKAANSE OPSOMMING: Rivier oewerwal-areas, oorgang gebiede tussen aangrensende terrestriële gemeenskappe en akwatiese ekosisteme, is baie dinamiese en komplekse ekosisteme met intrinsieke ekologiese eienskappe wat verskil in struktuur, funksie (bv. biogeochemie siklusse) en temporale dinamika. Oewerhabitatte langs riviere van die Mediterreense suid-wes Kaap is sensitief vir omgewingsveranderinge en kwesbaar vir indringing deur uitheemse plante (bekend as “invasive alien plants” (IAPs)), veral stikstof-fiksering Acacia spp., en relatief min werk het nog gefokus op hoe ekosisteme in die streek reageer op sulke veranderinge in die omgewing. Die belangrike rol wat gesonde oewerwal plantegroei speel in die handhawing van ekosisteemdienste- en integriteit, is al hoe meer uitgelig soos ons die agteruitgang van hierdie habitat in ag neem. Terwyl die Werk vir Water (WvW)-program al dat baie suksesvol was in die uitwissing van IAPs in oewersones in die kort termyn, is die mate waarin oewer-ekostelsels herstel na skoonmaakaksies swak verstaan. Fynbos oewerwal-areas is grootliks ingeneem deur houtagtige IAPs, veral stikstof fiksering Acacia spp. (soos Acacia mearnsii). Die resultate wat in hierdie studie aangebied is, het verskillende aspekte van oewer- struktuur en funksie aangespreek en dien as middel vir toekomstige navorsing en bestuur van oewerwal ekosisteme deur by te dra tot die evaluering van die sukses van skoonmaak inisiatiewe en die herstelproses daarvan. Die doel van hierdie projek was om die moontlikhede vir herstel van fynbos owerwal-ekostelsels te evalueer deur middel van verskeie grond- fisiese en chemiese eienskappe; plant funksionele groep dekking (genoem ‘plant functional types’ (PFT)); en geselekteerde grond biogeochemie prosesse in natuurlike, Acacia- aangetaste, en skoongemaakte rivierstelsels en nabygeleë terrestriese areas te vergelyk. Veldwerk is gedoen in bergstroom en voetheuwel rivierseksies van ses standhoudende rivierstelsels in Suid-wes Kaap, Suid Afrika. Van uit hierdie geselekteerde rivierstelsels is elf studie areas van drie kategorieë (of indringing status) gekies: vier natuurlike areas (nie aangetas); vier gematig- tot hoogs aangetaste areas (hoofsaaklik A. meanrsii); en drie skoongemaakte areas (rivieroewers wat meer as sewe jaar van te vore skoongemaak is). Binne elke studie area was vier tot vyf soortgelyke persele gevestig by elke van drie breë geomorfologiese sones: naamlik nat-, droë en hoogliggende terrestriese fynbos. Seisoenale grondmonsters vir 'n tydperk van een jaar is geneem. Resultate van hierdie studie het getoon dat PFT dekking en samestelling, grond fisiese- en chemiese eienskappe en N-mineralisasie en suur fosfatase aktiwiteit verskil tussen indringing status, geomorfologiese sones en oor seisoene. Ten opsigte van meeste grond fisiese en chemiese eienskappe en indekse van stikstof (N) en fosfor (P) siklusse kom die rivier vogregimes (droë oewersones) baie ooreen met die terrestriële gebiede. Aan die anderkant is die natbanksones gekenmerk deur grondeienskappe wat baie verskil van die ander twee geomorfologiese gebiede. Die gegewens ondersteun die hipotese dat indringing deur Acacia spp. verskeie grondeienskappe verander en plante se funksionele kenmerke beïnvloed deur i) die sisteem met voedingstowwe te verryk (veral N); ii) verhoog die toevoeging van plantmateriaal; iii) verander grond fisiese eienskappe; iv) verander die samestelling en verminder die dekking van PFT; v) en verhoog P biogeochemie. Hoewel grond fisiese -en chemiese eienskappe, en indekse van N en P mineralisasie verminder is tot vlakke wat soortgelyk aan natuurlike areas, het beskikbare anorganiese N twee keer hoër gebly by skoongemaakte gebiede. Nietemin, voorheen skoongemaakte gebiede is weer-binnegeval deur eksotiese grasse en die regenerasie of hertelling van inheemse fynbos gemeenskappe is taamlik beperk, veral houtagtige oewer struike en bome. Korrelasies tussen grond slik-en klei-inhoud en verskeie grondeienskappe gemeet in hierdie en ander studies dui op belangrike skakeling tussen die grondtekstuur en voedingstof beskikbaarheid. Die opruiming van Acacia spp. mag as aansporing dien vir die herstellingsproses van rivieroewerstelsels, maar veranderinge in die funksie van ekosisteme (bv. verhoogte grond N beskikbaarheid), as gevolg van indringing, mag aktiewe herstel noodsaak nadat die indringer spesies verwyder is. Aktiewe herstel onder sulke omstandighede sal verwag word om die herstel van skoongemaak oewer gemeenskappe te fasiliteer. Ons het wel egter nog 'n gebrek aan die meganistiese begrip in verband met die herstel van fynbos oewerwal areas na opruimings-inisiatiewe, sedert die sukses van herstel kan afhang van komplekse interaksie en terugvoer siklusse tussen die plante en hul fisiese omgewing. ʼn Meer omvattende begrip van fynbos rivieroewer ekologiese prosesse sal nie net die doeltreffendheid van opruimings-inisiatiewe deur die integrasie van wetenskaplike navorsing en bestuur verbeter nie, maar ook vooraf die gebied van rivieroewer-ekologie.

Thesis (MScConsEcol(Conservation Ecology and Entomology)--University of Stellenbosch, 2007.
Riparian areas are highly complex systems with varying levels of disturbance that are highly susceptible to invasion by alien plants. Once invaded, riparian areas play a major role in the dispersal and spread of invasive alien plants (IAPs) through the river system and, in some cases, to neighbouring landscapes. Riparian areas have therefore been prioritized by many alien clearing initiatives in South Africa. Current practice for the restoration of cleared areas is minimal and relies mainly on the un-aided recovery of native species from residual individuals and soil stored seed banks. Little research, however, has been done on the effectiveness of this approach or the extent to which riparian seed banks contribute towards community restoration. This study is part of a national research initiative (Targets for Ecosystem Repair in Riparian Ecosystems in Fynbos, Grassland and Savanna Biomes) funded by Department of Water Affairs and Forestry, in collaboration with Working for Water, The Centre for Invasion Biology and the Universities of Cape Town, Stellenbosch, Rhodes and Witwatersrand. The initiative undertook to investigate different restoration techniques on various invaded sites for their cost-effectiveness, efficiency, practicality and conservation integrity. This study has three aims. The first is to determine the composition of seed banks in un-invaded riparian areas within the fynbos biome to be used as a benchmark for future research, restoration grading and other management requirements. The second aim is to determine the composition of seed banks in heavily invaded riparian areas, and thus to assess the impact of invasion on the integrity of the seed banks. The third aim is to evaluate the restoration potential of riparian seed banks following the clearing of invasive alien plants (IAPs). Study sites were selected within four river systems in the south-western part of the Western Cape Province in South Africa: the Berg, Eerste, Molenaars and Wit Rivers. Plots were selected in both invaded (>75% IAP canopy cover; considered “closed” alien stands) and un-invaded (also termed reference, with <25% IAP canopy cover) sections of the river. Replicate plots were established along varying gradients of elevation (mountain stream and foothill) and moisture regimes (dry, wet and transitional bank zones). Soil samples were collected together with above-ground vegetation surveys and comparisons were made. Results from this study confirm those of previous studies that seed banks offer little reference to current aboveground vegetation, but rather offer insight into past vegetation history as well as future vegetation assemblages. Worldwide, many of the species that characteristically form seed banks are early successional species. A community study was done for the seed bank based on the species that germinated and were identifiable at termination of the project (6 months after initiation). Three clusters of species could be identified. One group comprised 32 generalist species that occurred in both reference and invaded sections of the rivers. A second group comprised 39 species associated with invaded sites, and a third group of 40 species that was associated with reference sites. A few sub-community groups were found within both the “reference” and “invaded” community groups which were assumed to be habitat specific. Most species were “pioneer” or relatively-short lived, early-successional species which play a vital role in the initial post-disturbance vegetation cover, and facilitate establishment of later successional species. Seed banks are notoriously variable over space and time, and floristic representation is often biased as a result of differences among species in seed production, dispersal and longevity in the soil. The general consensus is that seeds have an irregular, clustered spatial distribution that is dictated by both biological and environmental factors. Within river systems, the irregular clustering can be exceptionally skewed with the influence of pockets of high sediment deposition along the bank. Environmental factors that were found to significantly skew germination results were the presence of fire, as well as the extent and intensity of invasion (duration and cover). The high level of diversity and abundance in reference Berg River mountain stream seed banks was perceived to be a direct result of a moderate fire frequency (between 8-15 years) and the relatively natural state of the vegetation (i.e. very little invasion). Also, diversity and richness of indigenous species from the Wit and Molenaars Rivers were substantially higher in the invaded samples than the reference samples, probably because both river systems have a long history of invasion and other anthropogenic disturbances which would have an effect on the samples from “reference” sections (i.e. even a 25% presence of IAPs seems adequate enough to alter the composition of the seed bank). Correspondence analyses showed that species had clear affinities towards different levels of “key” riparian environmental variables (fire, invasion and anthropogenic disturbance). Most species were associated with moderate levels of fire frequency, invasion history, and anthropogenic disturbance. Comparisons of seed bank species assemblages between the lateral and longitudinal variables of the rivers offered insights into the habitat requirements of certain fynbos and riparian species. Most significant were the results from bank zone comparisons which showed distinct species groupings along the different moisture bands. As could be expected, riparian species were best represented within the wet bank zones and fynbos species within the dry bank zone, while species characteristic of both zones occurred in the transitional zone, making this seed bank zone the richest in species. Mountain stream sections were richer and more diverse than foothill sections over both invaded and reference samples. This is hypothesised to be linked to lower levels of anthropogenic disturbance experienced in the mountain stream sections. The impact of invasion on the riparian seed bank was most clearly shown through the correspondence analyses for the 20 most frequently occurring species. The seed bank assembly patterns were clearly defined by the state of the river (reference or invaded). Interestingly, this pattern was evident at all three spatial scales; landscape (rivers), reach (mountain stream and foothill sections) and habitat (dry, wet and transitional zones). The reference seed bank assemblage was more tightly grouped, implying that the species were more closely associated with each other and less variable than those of the invaded seed bank assemblages. The species groupings within the invaded seed banks were influenced by variables such as reach and zone, whereas the reference seed bank assemblages seem relatively unaffected by these variables. This implies that the presence of invasive alien plants creates additional variation within the seed bank which alters the natural groupings. At a broad scale, the invaded seed banks were less species rich. This means that not only will the resulting seedling community be harder to predict, but it will also have fewer species. However although generally lower in species richness, the seed banks from almost all invaded rivers interestingly showed a higher diversity of indigenous species than their reference counterparts. This is very promising in terms of rehabilitation of post-cleared riparian sites, but more information is needed to understand the seed bank composition and determine how sustainable the seed banks are for rehabilitation in the long-term. All invaded sections had fewer herbaceous perennial species but more herbaceous annual species. Graminoids made up 50% or more of the seed bank regardless of state (reference or invaded), while woody species (shrubs/shrublets) were generally more prevalent in the reference samples. These results imply that following the removal of invasive alien plants, the vegetation to regenerate from the seed bank is likely to comprise of short-lived, herbaceous species that are not necessarily an accurate reflection of the indigenous riparian community. It is however important to note that this study investigated only the species that were able to germinate over the study period (6 month germination period). Many riparian species may not have been represented because they are either late germinators or may not be present in the soil seed bank at all. In order to gain a holistic understanding of riparian community recruitment, it is recommended that seed bank studies such as this one be included in a more broad scale, long term investigation which takes into account various reproductive strategies used by riparian species. Research of this nature is in its infancy worldwide and there are many challenges involved in measuring diversity and change in these systems. However, within the scope of this study, I suggest that these results shed light on previously unanswered and important questions regarding the ecology of seed banks in the riparian ecosystems of the Western Cape.

Thesis (MScAgric)--Stellenbosch University, 2013.
ENGLISH ABSTRACT: Soil is a fundamental, non-renewable resource in any ecosystem. To uphold food production for increasing global human populations, it is imperative to develop ways in which to sustain healthy biological productivity and sustainability of agricultural soils. Nematodes are one of the most abundant groups of Metazoa occurring in all soils, and form an integral part of the soil food web at several trophic levels. They respond rapidly to changes within their environments, and can easily be extracted from soil, identified and characterised into functional guilds. Nematodes thus have the potential to impart insight into the condition of the soil food web. This study aims to establish whether nematodes will be suitable bio-indicators of soil health for the deciduous fruit industry in the Western Cape. Three different objectives have been set to determine the practical use of nematode community structures as a tool for the measurement of soil health. The objectives include describing the nematode community structure, biodiversity and functionality within Fynbos soils; the characterization of organic and conventional orchards; and the differences in nematode soil communities in differently managed soils in an apple orchard. The number of nematodes in each soil sample was quantified and identified to family level. The nematode biodiversity and functionality for each site was determined by evaluating the nematode food webs for trophic group distribution, as enumerated by the Maturity Index (MI), the Enrichment Index (EI), the Structure Index (SI), the Basal Index (BI) and the Channel Index (CI), based on the weighted abundance of coloniser-persister guilds. The functional guild analysis of Fynbos samples indicated that the enrichment and the structure of any given sample were not bound to a certain area, but it was representative of each of the four quadrats within the faunal analysis. Different geographic areas were found to differ in nematode diversity and functionality, which was mainly associated with dominant plant families and species (such as strong associations between Fynbos families Fabaceae, Solanaceae and Celestraceae with the nematode family Pratylenchidae). The most abundant nematode families present in the Fynbos were Tylenchidae, which are plant-feeding nematodes, and Cephalobidae which are bacterial-feeding nematodes. Despite Tylenchidae and Cephalobidae both having coloniser-persister values (cp-values) of two, they are split up into different feeding types. Cp-2 nematodes are tolerant to disturbances, and occur in all environments. Only one omnivorous family, the Dorylaimida, was identified in Fynbos samples. The average MI value for Fynbos was found to be very low, with a mean value of 1.26. The value obtained indicated the presence of taxa with tolerance to disturbance, which, in turn, indicated the presence of a disturbed soil, in general. The number of plant-parasitic nematodes within the Fynbos soils was low, which was supported by the low plant-parasitic index (PPI) of 0.85. The diversity, richness and evenness values were low, indicating low nematode diversity, but a distribution of abundances amongst the families. The average Hill’s N0 index value was 8.0, indicating that, in general, eight nematode families would have been present in a Fynbos soil sample. A study was done to determine the biodiversity and the functionality of the nematodes associated with deciduous fruit orchards that were conventionally, or organically, managed. Herbivores were dominant in all the orchards. The organic apple orchard had the lowest numbers of herbivores and fungivores, with the highest number of carnivores. When comparing organic and conventional apricot orchards, higher numbers of plant-parasitic nematodes were found in the organic orchard. Criconematidae occurred in higher numbers in conventional apricot orchard soil. When comparing organic apricots and apples, higher numbers of Criconematidae occurred within the organic apple soil. Overall, higher levels of plant-parasitic nematodes occurred in the organic apricot orchard. The MI indicated that all orchard soils had values below 1.5, indicating disturbance. Conventionally managed apricot orchard soil had the highest MI value of 1.48. The PPI value was highest in organically managed apricot orchards. All orchard soils were located within Quadrat B of the faunal analysis, indicating enrichment and structure. Regarding the diversity, richness and evenness of the distribution, conventional apricot soil had the highest species richness, while organic apple soil had the most even family distribution. Different management practices did not show marked differences in community composition and structure. The species richness of Fynbos soils was comparable to those of deciduous fruit orchards. Soil samples from eight different soil surface treatments were collected from an apple orchard in the Grabouw area. Treatments were combined according to the soil surface treatments received (chemical control of cover crops and weeds, mulch and mulch + effective micro-organism spray). Bacterivores were dominant in all soil treatments, with the least number being present in the chemical control (of cover crops and weeds) treatment. Sites which received chemical control of cover crops and weeds had higher levels of fungivores, compared to the levels at the other sites. High numbers of Rhabditidae occurred within mulch and mulch + effective micro-organism (EM) treatment sites, while high numbers of Aphelenchidae occurred in chemical control sites. The carnivorous family Ironidae only occurred in mulch + EM sites. Strong associations were found between soil surface applications and nematode families present within the soil. Chemical control (of cover crops and weeds) applications had the highest MI value, while values were equal for the other soil applications. The faunal analysis indicated that the mulch and the chemical control fell within Quadrat A, indicating enriched, but unstructured, soil, while the mulch + EM treatment fell within Quadrat B, indicating enrichment and structure, as well as good overall soil conditions. All the systems were dominated by bacterial decomposition pathways. Controversially, sites that received chemical control of the cover crops and weeds had the highest species richness of all three applications, as well as the highest level of diversity, according to the Simpson Index. As only the cover crops and the weeds were chemically controlled, the soil can be regarded as undisturbed, which explains the results obtained in this study. Clear differences in nematode community structure and composition were observed between the different soil applications in the apple orchard.
AFRIKAANSE OPSOMMING: Grond is 'n fundamentele, nie-hernubare hulpbron binne enige ekosisteem. Ten einde voedselproduksie vir die toenemende globale menslike bevolking te handhaaf, is dit noodsaaklik om maniere te ontwikkel om gesonde biologiese produktiwiteit en volhoubaarheid van landbougrond in stand te hou. Nematodes is een van die volopste Metazoa in alle gronde en vorm 'n integrale deel van die grond voedsel-web op verskeie trofiese vlakke. Hulle reageer vinnig op veranderinge binne hul omgewings, kan maklik ekstraheer en identifiseer word; en ook maklik in funksionele gildes ingedeel word. Nematodes het ook die potensiaal om insig oor te dra ten opsigte van die toestand van die grond voedsel-web. Hierdie studie het ten doel om vas te stel of nematodes geskikte bio-indikatore van grond gesondheid kan wees spesifiek vir die sagtevrugte bedryf in die Wes-Kaap. Drie verskillende doelwitte is gestel om die praktiese gebruik van nematode populasie samestelling as 'n instrument vir die meting van grond gesondheid te gebruik. Die doelwitte sluit in die nematode populasie samestelling, biodiversiteit en funksionaliteit binne natuurlike Fynbos; organies verboude versus konvensionele boorde; en die verskil in nematode populasie samestelling tussen verskillend behandelde en bestuurde grondpersele binne ʼn appel boord. Die nematode biodiversiteit en funksionaliteit vir elke perseel was bepaal deur die evaluering van die nematode voedselweb vir trofiese groep verspreiding en enumerering deur die Maturity Index (MI) en die Enrichment Index (EI), Strukturele Indeks (SI), Basale Indeks (BI) en Channel Index (CI) wat gebaseer is op die geweegde oorvloed van koloniseerder-persister gildes. Die funksionele gilde vir Fynbos monsters het aangedui dat die verryking en struktuur van enige gegewe perseel nie gebonde is aan ʼn bepaalde gebied nie, aangesien dit verteenwoordig was in elk van die vier kwadrante van die Fauna Analiseerder. Daar is gevind dat verskillende areas verskil in nematode diversiteit en funksionaliteit, wat hoofsaaklik geassosieer was met die dominante plant families en spesies in die omgewing. Die volopste nematode familie wat teenwoordig was in die Fynbos was Tylenchidae, wat plant-voedende nematodes is, en Cephalobidae, wat bakterie-voedend is. Tylenchidae en Cephalobidae het beide ʼn cp-waarde van twee, maar is verdeel in verskillende VIII tipes voedingsgroepe. Die cp-2 nematodes is verdraagsaam vir versteurings en kom in alle omgewings voor. Slegs een omnivoor familie is geïdentifiseer in Fynbos monsters, nl. die Dorylaimidae. Die gemiddelde MI waarde vir Fynbos was laag, met 'n gemiddelde waarde van 1.26. Hierdie waarde is ʼn aanduiding van die teenwoordigheid van taxa met verdraagsaamheid tot versteuring, wat op sy beurt 'n versteurde grond in die algemeen aangedui het. Die aantal plant-parasitiese nematodes binne die Fynbos-gronde was laag, wat ondersteun word deur die lae PPI-waarde van 0.85. Die waardes vir die diversiteit, spesie-rykheid en egaligheid was laag, wat dui op 'n lae nematode diversiteit, maar 'n egalige verspreidings onder families. Die Hill’s N0 indeks waarde was gelyk aan 'n gemiddelde van 8.0 en dui daarop dat in die algemeen agt nematode families teenwoordig sal wees in 'n Fynbos grondmonster. 'n Studie is gedoen om die biodiversiteit en funksionaliteit van nematodes wat verband hou met vrugteboorde wat organies en konvensioneel bestuur is te bepaal. Herbivore was dominant in alle boorde. Organiese appels het die laagste aantal herbivore en fungivore gehad en die hoogste aantal karnivore. Wanneer organiese en konvensionele appelkoosboorde met mekaar vergelyk is, was hoër getalle van plant-parasitiese nematodes gevind in die organiese boord. Criconematidae was teen ʼn groter aantal in die grond van die konvensionele appelkoosboord gevind. Met die vergelyking van organiese appelkose en appels word, is ʼn hoër aantal Criconematidae binne die organiese appelgrond aangetref. In die algemeen was hoër vlakke van plant-parasitiese nematodes gevind in die organiese appelkoosboord. Die MI het getoon dat alle boord waardes laer as 1.5 gehad het, wat daarop dui dat die gronde versteurd is. Die konvensioneel bestuurde appelkoosboord het die hoogste MI waarde gehad met ʼn vlak van 1.48. Die waarde vir die PPI was die hoogste in organies bestuurde appelkoosboorde. Alle boord gronde is geleë binne kwadrant B van die Fauna Analiseerder, wat dui op verryking met struktuur. Met betrekking tot die diversiteit, spesie-rykheid en egaligheid van die verspreiding van families, het konvensionele appelkoos grond die hoogste spesierykheid, terwyl die gronde van die organiese appelboord die mees egalige familie verspreiding vertoon het. Verskillende bestuurspraktyke nie toon nie merkbare verskille in die gemeenskap samestelling en struktuur nie. Die spesie-rykheid van Fynbos gronde is vergelykbaar met dié van sagtevrugte-boorde. Monsters is geneem van agt verskillende grondeoppervlak-behandelings in ‘n appelboord in die Grabouw area. Die behandelings is gekombineer volgens die grond toediening wat dit ontvang het (chemiese beheer van dekgewasse en onkruid, deklaag en ‘n deklaag + effektiewe mikro- IX organismes). Bakterievoedende nematodes was dominant in elke grondoppervlak-behandeling, met die minste teenwoordig in die behandelings wat chemiese beheer van die dekgewasse en onkruid ontvang het. Behandelings wat chemiese beheer van die dekgewasse en onkruid ontvang het, het ook hoër vlakke van fungivore in vergelyking met die ander behandelings. ʼn Hoë aantal Rhabditidae het voorgekom in grondmonsters van die deklaag en die deklaag + EM (effektiewe mikro-organismes) behandeling persele, terwyl ʼn groot aantal Aphelenchidae voorgekom het in chemiese beheer persele. Die predatoriese familie, Ironidae, het slegs voorgekom in persele wat die deklaag + EM behandeling ontvang het. Sterk assosiasies bestaan tussen grond behandeling en nematode families wat in die grond teenwoordig was. Die chemiese beheer behandeling het die hoogste MI waarde getoon, terwyl waardes vir die ander behandelings laer en gelyk was. Die fauna analise het daarop gedui dat die deklaag en chemiese beheer binne kwadrant A is en dus verryk, maar ook ongestruktureerd is. Die deklaag + EM behandeling het binne kwadrant B geval wat aandui op toestande van verryking en struktuur wat 'n goeie algehele grondtoestand tot gevolg gehad het. Al die stelsels is oorbruggingsweë wat oorheers was deur bakteriële ontbinding. Kontroversieel, het persele wat chemiese beheer van die dekgewasse en onkruid ontvang het, die hoogste spesierykheid van al drie behandelings getoon asook die hoogste vlak van diversiteit volgens die Simpson-indeks. Slegs die dekgewasse en onkruid is chemies behandel, nie die grond nie, en dus kan die grond as onversteurd beskou word en die resultate wat verkry is in die studie verklaar. Duidelike verskille in die nematode gemeenskap struktuur en samestelling is waargeneem tussen die verskillende grond behandelings in appel boorde.

Thesis (MScConsEcol (Conservation Ecology and Entomology))--University of Stellenbosch, 2010.
ENGLISH ABSTRACT: Riparian ecosystems of the Mediterranean south-western Cape region are projected to experience significant decreases in streamflow due to climate change and increased demands for water associated with human demographic trends and increasing living standards. Aggravating this problem are woody invasive alien plants, such as Acacia mearnsii, whose impacts, including those on catchment water yields, have justified extensive eradication programmes such as Working for Water (WfW). WfW has been highly successful in managing invasive alien species in some areas, while at the same time enhancing the quality of life of poor South Africans. Unfortunately, the managers of these eradication initiatives often experience a lack of information on the species- and site-specific ecological properties that may aid in prioritising sites more prone to invasion, essentially inhibiting accurate management output. Knowledge, such as that associated with the possible future distribution of invasive species in a changing environment, may help to optimise eradication initiatives. I therefore determined whether woody plants portray different physiological (vulnerability to cavitation) and wood anatomical traits (wood density, vessel resistance to implosion, vessel lumen and wall diameters) across three prominent riparian zones in the south-western Cape that each differ in streamflow quantity – to gain a mechanistic understanding of how woody species, especially invasive species, adapt their hydraulic strategy across this proxy for water availability. Using factorial ANOVA’s, to distinguish any differences in plant physiological and wood anatomical responses to water availability within and between species, showed Acacia mearnsii having consistently higher drought-tolerance (lower P50 values and denser wood) compared to native species under reduced water availability. These results supported the significant variation in drought-tolerance strategies that exist within and between taxonomically different species across different environments. Water availability thus has a strong selective effect on functional traits of species; however, minimum water potentials were more useful in describing in situ hydrological conditions than streamflow. Additionally, a non-causal relationship between wood anatomical traits and drought-induced cavitation was observed. Therefore, using only wood anatomical measurements to assess drought-tolerance of species might not be accurate across all species. This mechanistic approach to assess the invasive potential of species under projected drier conditions has great practical value. It can be used to improve species selection for restoration initiatives, and is of great value for future use in prioritizing eradication programmes.
AFRIKAANSE OPSOMMING: Rivieroewer ekosisteme in die Mediterreense Suidwes-Kaap streek kan groot afnames in stroomvloei verwag, wat meestal toegeskryf kan word aan klimaatsverandering en die verhoogde aanvraag na water geassosieerd met stygende populasiegrootte. Uitheemse indringerplante soos Acacia mearnsii vererger hierdie probleem. Laasgenoemde spesies plaas groot druk op opvanggebiede se water opbrengs, en vorm grootliks die rede waarom uitroeiing programme soos Werk vir Water (WfW) gestig is. WfW het al groot suksesse behaal in die bestuur van uitheemse indringerplante, en terselfdertyd die lewenskwaliteit van arm Suid-Afrikaners verhoog. Ongelukkig sukkel hierdie indringer uitroeiing inisiatiewe telkens met ongenoegsame bewyse wat kan help om leiding te verskaf by die prioritisering van areas meer geneig tot indringing. Die gevolg is dat onvoldoende bestuurs besluite gemaak kan word. Gevolglik sal kennis geassosieerd met die moontlike toekomstige verspreiding van hierdie indringerplant in ʼn veranderlike omgewing help om uitroeiing programme meer akkuraat te stel en gevolglik waardevol wees t.o.v. prioritisering van kwesbare areas. Die doel van hierdie studie was om die kwesbaarheid van sleutel inheemse houtagtige rivier spesies en veral die dreigende indringerplant Acacia mearnsii, te bestudeer in terme van verlaagde stroomvloei soos voorspel vir die Wes-Kaap fynbos ekosisteem. Deur te bepaal of houtagtige plante verskillende fisiologiese (kwesbaarheid teen xileem blokkasie) en anatomiese (hout digtheid, vat weerstandbiedendheid teen inmekaarkolking, vat holte en wand deursnee) hidrologiese eienskappe tentoonstel gemeet tussen drie prominente rivieroewer sones in die suidwes Kaap wat variëer in stroomvloei kwantiteit, verskaf ʼn meganistiese begrip van hoe spesies, veral die indringerplante, hul hidrologiese strategieë ten opsigte van droogtes kan aanpas. Faktoriële ANOVAS’s tussen spesies en liggings het getoon dat beide plant fisiologiese en hout anatomiese data beduidend variëer tussen taksonomies verskillende spesies. Veral Acacia mearnsii het deurgaans laer P50 waardes asook hoër houtdigtheid getoon, ‘n teken van hierdie spesies se verhoogde droogte toleransie in vergelyking met die inheemse spesies. Wat beduidend is is dat spesies-spesifieke lewensstrategieë ten opsigte van droogte toleransie in hierdie rivieroewer sones voorkom. Resultate het bevestig dat water beskikbaarheid ʼn groot rol speel in die seleksie van funksionele karaktereienskappe in plante, maar, dat minimum water potensiaal meer akkuraat was om in situ hidrologiese toestande te beskryf as wat stroomvloei kon. Die verhouding tussen plant fisiologiese en hout anatomiese karaktereienskappe was indirek as gevolg van spesies-spesifieke lewensstrategieë. Gevolglik sal die allenige gebruik van hout anatomiese eienskappe om droogte toleransie in plante te assesseer onakkuraat wees omdat daar ʼn swak verhouding tussen hout anatomie en droogte-geïnduseerde xileem blokkasie bestaan. ʼn Meganistiese benadering om die indringing potensiaal van spesies onder voorspelde droër kondisies te assesseer, asook om spesies seleksie vir restourasie doeleindes op te skerp, is prakties uitvoerbaar, en van groot waarde vir toekomstige gebruik in uitroeiing en restourasie inisiatiewe.

Thesis (MScFor)--Stellenbosch University, 2002.
ENGLISH ABSTRACT: The invasive Australian acacia, A. sa ligna, is widespread in the Western Cape, South Africa, and is widely used by local communities. Not surprisingly, the introduction of the biological control agent, the fungus Uromycladium tepperianum in 1987 was received with mixed emotions. In an effort to determine the socio-economical and ecological impact of the fungus, the Department of Water Affairs and Forestry has commissioned a study, of which this thesis forms part. For this thesis, a number of parameters, environmental as well as biological, were sampled, analyzed and compared with existing data from previous studies. The goal was to obtain a comprehensive estimation of the effect of A. saligna on a Sand Plain Fynbos community near Atlantis and to assess whether or not, the detrimental effect A. saligna has on plant biodiversity, has reached the stage where it has become irreversible. The floristic data confirmed results from earlier studies, that invasion of A. saligna in Fynbos communities induces a decline in plant diversity, especially in dense acacia thickets. This study mainly revealed structural changes rather than community shifts. The enrichment of the soil as noted by others authors was also confirmed for the study area. However, it was outside the scope of this study to determine the long-term effects of this enrichment on the Sand Plain Fynbos communities. Soil moisture content was sampled on three different occasions, in densely invaded and uninvaded study plots. The aim was to see if A. saligna had any influence on the availability of water in the upper soil. Contrary to expectations, moisture content under acacia stands was higher in spring and early summer in the top soil than in pristine fynbos. Pitfall traps were used to sample the arthropods that dwell the surface of the study area. For arthropods in general, the survey did not produce conclusive data, but spider species seem to be positively affected by the presence of A. saligna, probably due to the structural diversity they add to the fynbos. This study revealed that the full ecological impact of A. saligna on its environment is far from understood, mainly due to the richness and complexity of the fynbos communities and a lack of research about faunal aspect of the Fynbos ecosystem.
AFRIKAANSE OPSOMMING: Die Australiese akasia, A. saligna, is wydverspreid in die Wes-Kaap, Suid-Afrika, en word dikwels gebruik deur die plaaslike gemeenskap. Dit is dan nie verbasend dat die invoering van die biologiese bestrydingsmiddel, die swam Uromycladium Tepperianum in 1987, met teenstrydige emosies ontvang is nie. In 'n poging om die sosio-ekonomiese en ekologiese impak van die swam te bepaal, het die Department van Waterwese en Bosboukunde 'n ondersoek aangevra waarvan die tesis deel vorm. Vir die tesis word 'n aantal parameters, omgewings sowel as biologies, geproef, geanaliseer en vergelyk met bestaande data van vroeër navorsing. Die doel van die studie is om te bepaal watter effek A. saligna op 'n sandpleinfynbos gemeenskap naby Atlantis het en om sodoende vas te stelof die nadelige effek van A. saligna op die biodiversiteit onomkeerbaar is. Plantaardige data bevestig resultate uit vroeër studies dat A. saligna 'n afuame in plant diversiteit, veral in digte akasiabosse, veroorsaak. In die studie word getoon dat die toename van A. saligna strukturele veranderings in plaas van gemeenskaplike verskuiwings tot gevolg het. Die verryking van die grond, deur ander navorsers genoteer, word ook in die studie bevestig. Dit is egter buite die veld van studie om die lang termyn gevolge van die verryking van die grond op die sandpleinfynbosgemeenskap te beslis. Op drie verskillende geleenthede word die watergehalte van die grond getoets onder die akasiabosse en die fynbos. Die doel van die toetse is om vas te stel hoe A. saligna die beskikbaarheid van water in die boonste grondlaag beïnvloed. In teenstelling is hoër vogtigheidsvlakke in die boonste grondlaag onder die akasiabosse as onder die fynbos gevind gedurende lente en vroeë somer. Lokvalle is gebruik om monsters te neem van die antropodieë woonagtig op die oppervlak van die studiearea. Oor die algemeen is die opname vir die antropodieë onvoldoende. Dit is egter insiggewend dat die spinnekopspesies voordeel trek uit die aanwesigheid van A. saligna. Dit is waarskynlik omdat die akasia strukturele diversiteit aan die fynbos verleen. Die studie onthul dat die volle ekologiese impak van A. saligna op sy omgewing moeilik verstaanbaar is as gevolg van die diversiteit en kompleksiteit van fynbos asook 'n gebrek aan navorsing.

Thesis (MSc (Microbiology))--Stellenbosch University, 2008.
The soil environment is thought to contain a lot of the earth’s undiscovered biodiversity. The aim of this study was to understand the extent of microbial diversity in the unique ecosystem of the Western Cape’s fynbos biome. It is known that many processes give rise to this immense microbial diversity in soil. In addition the aim was to link microbial diversity with the soils physio-chemical properties as well as the plant community’s structure. Molecular methods especially automated ribosomal intergenic spacer analysis (ARISA) was used in the study. The most important property of environmental DNA intended for molecular ecology studies and other downstream applications is purity from humic acids and phenolic compounds. These compounds act as PCR inhibitors and need to be removed during the DNA extraction protocol. The fist goal in the study was to develop an effective DNA extraction protocol by using cationic locculation of humic acids. The combination of cationic flocculation with CuCl2 and the addition of PVPP and KCl resulted in a high yield of DNA, suitable for PCR amplification with bacterial and fungal specific primers. Determining the reproducibility and accuracy of ARISA and ARISA-PCR was important because these factors have an important influence on the results and effectiveness of these techniques. Primer sets for automated ribosomal intergenic spacer analysis, ITS4/ITS5, were assessed for the characterization of the fungal communities in the fynbos soil. The primer set delivered reproducible ARISA profiles for the fungal community composition with little variation observed between ARISAPCR’s. ARISA proved useful for the assessment and comparison of fungal diversity in ecological samples. The soil community composition of both fungal and bacterial groups in the Sand fynbos was characterized. Soil from 4 different Sand fynbos sites was compared to investigate diversity of eubacterial and fungal groups at the local as well as a the landscape scale. A molecular approach was used for the isolation of total soil genetic DNA. The 16S-23S intergenic spacer region from the bacterial rRNA operon was amplified when performing bacterial ARISA from total soil community DNA (BARISA). Correspondingly, the internal transcribed spacers, ITS1, ITS2 and the 5.8S rRNA gene from the fungal rRNA operon were amplified when undertaking fungal ARISA (F-ARISA). The community structure from different samples and sites were statistically analysed. ARISA data was used to evaluate different species accumulation and estimation models for fungal and bacterial communities and to predict the total community richness. Diversity, evenness and dominance were the microbial communities were used to describe the extent of microbial iversity of the fynbos soils. The spatial ordination of the bacterial and fungal species richness and diversity was considered by determining the species area relationship and beta diversity of both communities. The correlation between the soil physio-chemical properties was determined. The plant community structure data was correlated with the fungal and the bacterial community structure. The results indicated that bacterial species numbers and diversity were continually higher at the local scale. Fungi however showed higher species turnover at the landscape scale. Bacterial community structure showed stronger links to the plant community structure whereas the fungi community structure conformed to spatial separation patterns. To further investigate the diversity of soil microbes the potential of genus specific primes was investigated. The genus Penicillium is widespread in the soil environment and the extent of its diversity and distribution is however not. For this reason Penicillium was chosen as a model organism. To expand the insight into the diversity of Penicillium species in the fynbos soil ecosystem, a rapid group specific molecular approach would be useful. Penicillium specific primers targeting the 18S rRNA ITS gene region were evaluated. Fungal specific primers ITS4 and ITS5, targeting the internal transcribed region (ITS) were used to target Penicillium specific in the soil sample. Nested PCR, using primer Pen-10 and ITS5, was then utilized to target Penicillium species specifically. The discrimination of Penicillium species was possible due to length heterogeneity of this gene region. Eight different peaks was detected in the soil sample with ARISA and eight different species could be isolated on growth media. The technique proved useful for the detection and quantification of Penicillium species in the soil.

Thesis (MSc)--University of Stellenbosch, 2002.
ENGLISH ABSTRACT: Five new species of ophiostomatoid fungi, colon ising the infructescences of serotinous Protea species, have recently been discovered in South Africa. Prior to this, ophostomatoid fungi were thought to be restricted to the Northern Hemisphere. The discovery of these five species thus extensively expanded the known geographical range of these fungi, now also to include the Southern Hemisphere. Since this discovery, few studies have focused on the interesting ecology of this group, which is uniquely adapted for spore dispersal by arthropods. Studies focussed on ophiostomatoid fungi provide an unique opportunity to study inter-organism interactions between fungi, their host plants and the arthropods responsible for their spore dispersal. Very few similar studies have been undertaken, particularly in the Fynbos Biome, to which most of our economically important Protea species are confined. The current study provides insight into some ecological aspects of these complex interactions. The seasonal distribution of the ophiostomatoid fungi associated with the infructescences of members of the Proteaceae was investigated. Definite seasonal patterns were observed, with peak fungal colonisation occurring during the wetter winter months. While determining the host specificity of these fungi, a new Protea host for Ophiostoma splendens was identified, and a new species of Rhyncomeliola was discovered. All ophiostomatoid species native to Fynbos in the Stellenbosch region are exclusively associated with the infructescences of species in the plant genus Protea. By employing a multiplex Polymerase Chain Reaction (PCR), a set of group specific primers was developed for the identification of South African Ophiostoma and Gondwanamyces fungal DNA. This newly developed method was used to scan arthropods collected from the infructescences of P. repens for the presence of 0. splendens and G. proteae spores. By using these group-specific primers, three insects possibly responsible for long range dispersal of fungal spores were identified. Three further insect species, possibly contributing to the short-range dispersal of ophiostomatoid spores, were also implicated through this method. All arthropods associated with the fruiting structures of selected members of the Proteaceae were also investigated. A total of 62 pseudospecies (ca. 7500 individuals), belonging to 45 different arthropod families, were collected. Proteaceae species with larger fruiting structures housed more arthropod species and higher numbers of individuals than Proteaceae taxa with smaller fruiting structures. Some plant species housed similar arthropod communities, while others housed unique suites of arthropods. Seasonal patterns in arthropod numbers were observed, and it was found that, in most instances, arthropod numbers peaked during the autumn and winter months. Twenty-five fungal taxa were isolated from various Proteaceae arthropods, many of which are genera known to include Proteaceae pathogenic species. Ophiostomatoid fungi have a saprophytic relationship with their Protea hosts, and may deter some of these potentially harmful fungi from colon ising the infrutescences. Some fungi showed a high degree of specificity towards potential vectors, while others were found on a diverse range of arthropods. This study highlights the existence of complex inter-organismal interactions within the Fynbos Biome, a study area where the interactions between plants, fungi and insects have been grossly neglected. The few studies that have been conducted in this field have mostly focussed on a limited number of organisms, and no wide-scale attempts, such as presented here, have been published. It is important to obtain a holistic view in any ecological study that focuses on interactions between different suites of organisms. Ultimately this will aid in the development of better conservation strategies. This study thus provides a muchneeded start in studies on multi-organismal interactions in the Fynbos Biome.
AFRIKAANSE OPSOMMING: Vyf nuwe ophiostoma-agtige fungus spesies is onlangs in die vrug-liggame van Suid Afrikaanse Protea plante ontdek. Voor hierdie ontdekking, was die algemene opvatting dat ophiostoma-agtige fungi beperk is tot die Noordelike Halfrond. Die ontdekking van hierdie vyf spesies het dus die bekende geografiese verspreiding van hierdie tipe fungi vergroot om nou ook die Suidelike Halfrond in te sluit. Sederdien het min studies gefokus op die interesante ekologie van hierdie groep, wat aangepas is vir spoorverspreiding deur geleedpotiges. Studies wat fokus op die ophiostoma-agtige fungi voorsien 'n unieke geleentheid om die inter-organismiese-interaksies tussen fungi, hul gasheer plante en die geleedpotiges wat hul spore versprei, te bestudeer. Baie min soortgelyke studies is al voorheen in die Fynbos Bioom, waar die meeste van ons ekonomies-belangrike Protea spesies voorkom, onderneem. Die huidige studie verleen meer inligting oor sommige ekologiese aspekte van hierdie komplekse interaksies. Seisoenale verspreidingspatrone van ophiostoma-agtige fungi geassosieer met die vrug-liggame van lede van die Proteaceae, is ondersoek. Daar is defnitiewe seisoenale patrone in die aanwesigheid van fungi gevind, met 'n piek in fungi kolonisasie-getalle gedurende die vogtiger wintermaande. 'n Nuwe Protea gasheer vir Ophiostoma splendens en 'n nuwe fungus spesie (Rhyncomeliola sp.), is ontdek. Alle Fynbos ophiostoma-agtige spesies in die Stellenbosch area, is beperk tot Protea spesies. 'n Multipleks Polimerase Ketting Reaksie is ontwikkel om die spesifieke DNS van ophiostoma-agtige fungi te herken. Hierdie metode is gebruik om te toets vir die aanwesigheid van spore van hierdie fungi op die liggame van geleedpotiges (geassosieerd met P. repens). Hierdeur is drie insekte wat waarskynlik verantwoordelik is vir die langafstand verspreiding van spore geidentifiseer. Drie verdere insekte wat moontlik verantwoordelik is vir die kortafstand verspreiding van ophiostoma-agtige fungi is ook aangewys. Alle geleedpotiges geassosieer met die vrugstrukture van geselekteerde lede van die Proteaceae is ondersoek. 'n Totaal van 62 pseudo-spesies (omtrent 7500 individue), wat tot 45 families behoort, is versamel. Proteaceae spesies met groter vrugstrukture het meer geleedpotige spesies en individue gehuisves as taksa met kleiner vrugstrukture. Sommige plant spesies het soortgelyke geleedpotige gemeenskappe gehuisves, terwyl unieke groepe geleedpotiges in ander plante voorgekom het. Alhoewel die geleedpotiges seisonale variasies in getalle geopenbaar het, het die meeste groepe 'n piek in getalle getoon gedurende die herfs- en wintermaande. Vyf-en-twintig fungi taksa is geïsoleer vanaf verskeie Proteaceae geleedpotiges. Sommige van hierdie is genera wat Proteaceae patogeniese spesies insluit. Sommige fungi het 'n hoë graad van spesifisiteit teenoor potensiële vektore getoon, terwyl ander weer algemeen op verskeie geleedpotige spesies gevind is. Hierdie studie dui op die bestaan van komplekse inter-organismiese-interaksies in die Fynbos Bioom, in 'n area waar die studie van interaksies tussen plante, fungi en insekte nog baie min aandag geniet het. Die beperkte aantal studies wat tot dusver in hierdie veld onderneem is, fokus gewoonlik slegs op 'n paar organismes. Geen grootskaalse studies, soos die een hier voorgelê, is al gepubliseer nie. In enige ekologiese studie wat fokus op interaksies tussen verskeie organismes, is dit belangrik om 'n holistiese siening te probeer verkry. Uiteindelik sal dit bydra tot die ontwikkeling van beter bewarings-strategië. Hierdie studie verleen dus 'n noodsaaklike begin tot studies op multiorganismiese- interaksies.

Thesis (MScConEcol (Conservation Ecology and Entomology))--University of Stellenbosch, 2011.
ENGLISH ABSTRACT: Insect pollinators play an important role in producing crops in global agriculture. Pollinatordependent crops contribute to maintaining a healthy variety in the human diet and often have a high market value, beneficial for local or regional economies. Insect crop pollinators can either be from natural areas adjacent to orchards, or they can be brought into orchards by beekeepers that manage them. Pollination by wild pollinators is an ecosystem service, while managed pollinators (mostly honeybees) is a humanly managed service, considered not to be related to the ecosystem. Ecosystem services and their economic value have often been used as an incentive for conservation, although it is sometimes difficult to characterise and quantify them. Wild and managed pollinators have been reported to be threatened in several regions around the world, and there is concern about the effect a pollination deficit may have on crop production. Different crops and cultivars have different levels of dependence on insect pollination due to a combination of biological, physical and management factors. In this study, the pollination dependence of the Granny Smith apple cultivar and the respective contributions of wild and managed pollinators are investigated in the Western Cape province of South Africa. Granny Smith apples show a significant increase in production with insect pollination (wild and managed). Managed honeybees are more abundant in orchards than wild honeybees, and also provide a better pollination service. This difference between the pollination service of wild and managed honeybees are specifically noted in the quality, where managed honeybees pollination result in significantly more seeds per fruit and consequently produce a better shaped apple. The study goes further by quantifying the ecosystem services to the managed honeybee industry through a questionnaire completed by beekeepers. It was found that 49% of the managed hives in the Western Cape rely to some extent on natural vegetation as a forage source. Furthermore 18% of honey produced is also from natural vegetation and the wild honeybee population replenish managed honeybee stocks if they become depleted. Although managed honeybees are not usually considered an ecosystem service, it is clear that they are still linked to the ecosystem via these pathways. It is thus obvious that all pollination sources are linked to the environment, not just wild pollinators. A further economic valuation of the ecosystem service studied, and to the argument for conservation of pollinators and the resources they depend on.
AFRIKAANSE OPSOMMING: Insek bestuiwing speel ‘n belangrike rol in die produksie van gewasse in landbou wêreldwyd. Gewasse wat bestuiwing-afhanklik is, dra by tot ‘n gesonde verskeidenheid in die mens se dieët en hul hoë mark waarde is voordelig vir plaaslike en streeks ekonomieë. Insek bestuiwers kan of van natuurlike areas langs boorde afkomstig wees, of bestuurde bestuiwers kan deur byeboere in boorde ingebring word. Bestuiwing deur wilde bestuiwers is ‘n ekosisteem diens, maar die byeboere verskaf ‘n bestuurde diens, wat nie altyd gereken word om aan die ekosisteem verwant te wees nie. Ekosisteem dienste en hul ekonomiese waarde word gereeld gebruik as insentief vir bewaring, alhoewel dit soms moeilik is om dit te karaktariseer en te kwantifiseer. In sekere streke wêreldwyd is dit bewys dat wilde, asook bestuurde bestuiwers, bedreig is en daar heers bekommernis dat ‘n tekort aan bestuiwers gewas produksie negatief sal beïnvloed. Verskillende gewasse en kultivars het verskillende vlakke van bestuiwing-afhanklikheid as gevolg van verskillende biologiese en fisiese faktore en bestuurspraktyke. In hierdie studie is die bestuiwings-afhanklikheid van die Granny Smith appel kultivar ondersoek, asook die bydrae van wilde en bestuurde heuningbye in die Wes-Kaap provinsie van Suid Afrika. Granny Smith appels toon ‘n betekenisvolle produksie verbetering met insek bestuiwing (wilde en bestuurde bye). Daar is ‘n groter hoeveelheid bestuurde bye in ‘n boord as wilde bye, en hulle verskaf ook dus ‘n beter bestuiwingsdiens. Die voordeel van bestuurde bye bo wilde bye word veral in vrug kwaliteit opgemerk. As bestuurde bye gebruik word, is daar betekenisvol meer sade per vrug en gevolglik het die appels ook ‘n beter vorm. Verder fokus die studie ook op die kwantifisering van ekosisteem dienste wat aan die bestuurde heuningby industrie verskaf word, deur inligting van byeboere te gebruik. Daar is bevind dat 49% van die kolonies bestuurde bye in die Wes- Kaap is tot ‘n mate afhanklik van natuurlike plantegroei vir voedsel. Verder is 18% van die geproduseerde heuning ook afkomstig van natuurlike plantegroei se nektar en byeboere vang wilde kolonies om uitgestorwe bestuurde kolonies te vervang. Dit is dus duidelik dat alle bestuiwings bronne gekoppel is aan die omgewing, nie slegs wilde bestuiwers nie. ‘n Verdere ekonomiese waardasie van die onderskeie ekosisteem dienste wat bestudeer is, voeg motivering by tot die bewaring van bestuiwers en die hulpbronne waarvan hulle afhanklik is.