Dissertations / Theses on the topic 'Fynbos ecology – South Africa – Western Cape'

The revegetation of severely, disturbed areas using indigenous vegetation forms the topic of this thesis. Mountain Fynbos was chosen for the study because of its importance as a unique vegetation-type worthy of conservation. Unfortunately, this vegetation faces long-term threats associated with escalating development pressures, which include the demand for improved infrastructures. These factors are discussed and a process is developed for using indigenous vegetation to revegetate severely disturbed areas. This use of indigenous vegetation represents a significant and innovative move away from the traditional use of commercially available grasses in South Africa. Fynbos is adapted to periodic droughts and nutrient poor soils and as such has practical advantages over artificial plant covers in terms of its low maintenance requirements for long term establishment. Theoretical perspectives of disturbance and succession are contrasted with the requirements for revegetation as observed in the field.

Thesis (MScConEcol)--Stellenbosch University, 2012.
ENGLISH ABSTRACT: Riparian ecotones, transitional areas between upland terrestrial communities and aquatic ecosystems, are very dynamic and complex ecosystems with intrinsic ecological properties differing in spatial structure, function and temporal dynamics. Riparian habitats along rivers of the Mediterranean south-western Cape are sensitive to environmental change and particularly vulnerable to invasion by invasive alien plants (IAPs), especially nitrogen-fixing Acacia spp., and yet relatively little work has focused on how riparian ecosystems in this region respond to such stressors. The important roles that intact riparian vegetation play in maintaining ecosystem integrity and services have been increasingly highlighted as we acknowledge the degradation of these habitats. While the Working for Water (WfW) programme has been shown to be very successful in eradicating IAPs in riparian zones in the short-term, the extent to which riparian ecosystems recover following alien clearing activities remains poorly understood. The results presented in this study addressed several different aspects of riparian structure and function and acts as a steppingstone for guiding future research and management in riparian zones by adding to the evaluation of the success of clearing initiatives and restoration thereof. The aim of this study was to assess plant functional type (PFT) cover, soil physical and chemical properties, and selected biogeochemical processes in natural, Acacia- invaded and cleared riparian ecotones and associated non-riparian upland fynbos. Fieldwork was performed in mountain and foothill sections of six perennial river systems within the south-western Cape. Eleven sites of three categories were chosen: four natural sites (uninvaded); four moderate to highly invaded sites (predominantly A. mearnsii); and three cleared sites (a formerly invaded site that had been cleared more than 7 years prior to the study). Within each site, four to five replicate plots were established along each of three geomorphological zones (wet bank, dry bank, and upland fynbos). Seasonal soil samples were collected for a period of one year. Results from this study showed that PFT cover and composition, soil physical and chemical properties and rates of nitrogen (N) and phosphorus (P) mineralization differed amongst invasion status, between geomorphological zones and across seasons. Regarding most soil physical and chemical properties and indices N and P cycling, river floodplains (dry banks) were very similar to terrestrial uplands. Acacia spp. changes soil properties and affects plant functional attributes by i) enriching the system with N; ii) enhancing litter inputs; iii) altering soil physical properties; iv) changing the composition and reducing the cover of PFT; and v) enhancing P mineralization rates. Although measured soil physical and chemical properties and N and P mineralization rates were reduced to levels that were similar to or resembled the situation at natural areas, available inorganic N remained two times higher after more than seven years of clearance. Furthermore, cleared areas were characterized by sparse woody cover and a high cover of alien grasses. Correlations between soil silt and clay content and several soil properties measured in this and other studies indicates important linkages between soil texture and resource availability. Clearing Acacia spp. may initiate restoration of invaded riparian ecosystems, but changes in ecosystem function (e.g. elevated soil N availability) as a result of invasion may necessitate active restoration following the removal of the alien species. Active restoration under such conditions would be required to facilitate the restoration of cleared riparian communities. However, we still lack the mechanistic understanding around fynbos riparian recovery after clearing, as the success of restoration may depend on complex interaction and feedback cycles between plants and their physical environment. A greater comprehensive understanding of fynbos riparian ecological processes will not only improve the effectiveness of restoration initiatives by integrating science and management, but also advance the field of riparian ecology.
AFRIKAANSE OPSOMMING: Rivier oewerwal-areas, oorgang gebiede tussen aangrensende terrestriële gemeenskappe en akwatiese ekosisteme, is baie dinamiese en komplekse ekosisteme met intrinsieke ekologiese eienskappe wat verskil in struktuur, funksie (bv. biogeochemie siklusse) en temporale dinamika. Oewerhabitatte langs riviere van die Mediterreense suid-wes Kaap is sensitief vir omgewingsveranderinge en kwesbaar vir indringing deur uitheemse plante (bekend as “invasive alien plants” (IAPs)), veral stikstof-fiksering Acacia spp., en relatief min werk het nog gefokus op hoe ekosisteme in die streek reageer op sulke veranderinge in die omgewing. Die belangrike rol wat gesonde oewerwal plantegroei speel in die handhawing van ekosisteemdienste- en integriteit, is al hoe meer uitgelig soos ons die agteruitgang van hierdie habitat in ag neem. Terwyl die Werk vir Water (WvW)-program al dat baie suksesvol was in die uitwissing van IAPs in oewersones in die kort termyn, is die mate waarin oewer-ekostelsels herstel na skoonmaakaksies swak verstaan. Fynbos oewerwal-areas is grootliks ingeneem deur houtagtige IAPs, veral stikstof fiksering Acacia spp. (soos Acacia mearnsii). Die resultate wat in hierdie studie aangebied is, het verskillende aspekte van oewer- struktuur en funksie aangespreek en dien as middel vir toekomstige navorsing en bestuur van oewerwal ekosisteme deur by te dra tot die evaluering van die sukses van skoonmaak inisiatiewe en die herstelproses daarvan. Die doel van hierdie projek was om die moontlikhede vir herstel van fynbos owerwal-ekostelsels te evalueer deur middel van verskeie grond- fisiese en chemiese eienskappe; plant funksionele groep dekking (genoem ‘plant functional types’ (PFT)); en geselekteerde grond biogeochemie prosesse in natuurlike, Acacia- aangetaste, en skoongemaakte rivierstelsels en nabygeleë terrestriese areas te vergelyk. Veldwerk is gedoen in bergstroom en voetheuwel rivierseksies van ses standhoudende rivierstelsels in Suid-wes Kaap, Suid Afrika. Van uit hierdie geselekteerde rivierstelsels is elf studie areas van drie kategorieë (of indringing status) gekies: vier natuurlike areas (nie aangetas); vier gematig- tot hoogs aangetaste areas (hoofsaaklik A. meanrsii); en drie skoongemaakte areas (rivieroewers wat meer as sewe jaar van te vore skoongemaak is). Binne elke studie area was vier tot vyf soortgelyke persele gevestig by elke van drie breë geomorfologiese sones: naamlik nat-, droë en hoogliggende terrestriese fynbos. Seisoenale grondmonsters vir 'n tydperk van een jaar is geneem. Resultate van hierdie studie het getoon dat PFT dekking en samestelling, grond fisiese- en chemiese eienskappe en N-mineralisasie en suur fosfatase aktiwiteit verskil tussen indringing status, geomorfologiese sones en oor seisoene. Ten opsigte van meeste grond fisiese en chemiese eienskappe en indekse van stikstof (N) en fosfor (P) siklusse kom die rivier vogregimes (droë oewersones) baie ooreen met die terrestriële gebiede. Aan die anderkant is die natbanksones gekenmerk deur grondeienskappe wat baie verskil van die ander twee geomorfologiese gebiede. Die gegewens ondersteun die hipotese dat indringing deur Acacia spp. verskeie grondeienskappe verander en plante se funksionele kenmerke beïnvloed deur i) die sisteem met voedingstowwe te verryk (veral N); ii) verhoog die toevoeging van plantmateriaal; iii) verander grond fisiese eienskappe; iv) verander die samestelling en verminder die dekking van PFT; v) en verhoog P biogeochemie. Hoewel grond fisiese -en chemiese eienskappe, en indekse van N en P mineralisasie verminder is tot vlakke wat soortgelyk aan natuurlike areas, het beskikbare anorganiese N twee keer hoër gebly by skoongemaakte gebiede. Nietemin, voorheen skoongemaakte gebiede is weer-binnegeval deur eksotiese grasse en die regenerasie of hertelling van inheemse fynbos gemeenskappe is taamlik beperk, veral houtagtige oewer struike en bome. Korrelasies tussen grond slik-en klei-inhoud en verskeie grondeienskappe gemeet in hierdie en ander studies dui op belangrike skakeling tussen die grondtekstuur en voedingstof beskikbaarheid. Die opruiming van Acacia spp. mag as aansporing dien vir die herstellingsproses van rivieroewerstelsels, maar veranderinge in die funksie van ekosisteme (bv. verhoogte grond N beskikbaarheid), as gevolg van indringing, mag aktiewe herstel noodsaak nadat die indringer spesies verwyder is. Aktiewe herstel onder sulke omstandighede sal verwag word om die herstel van skoongemaak oewer gemeenskappe te fasiliteer. Ons het wel egter nog 'n gebrek aan die meganistiese begrip in verband met die herstel van fynbos oewerwal areas na opruimings-inisiatiewe, sedert die sukses van herstel kan afhang van komplekse interaksie en terugvoer siklusse tussen die plante en hul fisiese omgewing. ʼn Meer omvattende begrip van fynbos rivieroewer ekologiese prosesse sal nie net die doeltreffendheid van opruimings-inisiatiewe deur die integrasie van wetenskaplike navorsing en bestuur verbeter nie, maar ook vooraf die gebied van rivieroewer-ekologie.

Thesis (MScConsEcol(Conservation Ecology and Entomology)--University of Stellenbosch, 2007.
Riparian areas are highly complex systems with varying levels of disturbance that are highly susceptible to invasion by alien plants. Once invaded, riparian areas play a major role in the dispersal and spread of invasive alien plants (IAPs) through the river system and, in some cases, to neighbouring landscapes. Riparian areas have therefore been prioritized by many alien clearing initiatives in South Africa. Current practice for the restoration of cleared areas is minimal and relies mainly on the un-aided recovery of native species from residual individuals and soil stored seed banks. Little research, however, has been done on the effectiveness of this approach or the extent to which riparian seed banks contribute towards community restoration. This study is part of a national research initiative (Targets for Ecosystem Repair in Riparian Ecosystems in Fynbos, Grassland and Savanna Biomes) funded by Department of Water Affairs and Forestry, in collaboration with Working for Water, The Centre for Invasion Biology and the Universities of Cape Town, Stellenbosch, Rhodes and Witwatersrand. The initiative undertook to investigate different restoration techniques on various invaded sites for their cost-effectiveness, efficiency, practicality and conservation integrity. This study has three aims. The first is to determine the composition of seed banks in un-invaded riparian areas within the fynbos biome to be used as a benchmark for future research, restoration grading and other management requirements. The second aim is to determine the composition of seed banks in heavily invaded riparian areas, and thus to assess the impact of invasion on the integrity of the seed banks. The third aim is to evaluate the restoration potential of riparian seed banks following the clearing of invasive alien plants (IAPs). Study sites were selected within four river systems in the south-western part of the Western Cape Province in South Africa: the Berg, Eerste, Molenaars and Wit Rivers. Plots were selected in both invaded (>75% IAP canopy cover; considered “closed” alien stands) and un-invaded (also termed reference, with <25% IAP canopy cover) sections of the river. Replicate plots were established along varying gradients of elevation (mountain stream and foothill) and moisture regimes (dry, wet and transitional bank zones). Soil samples were collected together with above-ground vegetation surveys and comparisons were made. Results from this study confirm those of previous studies that seed banks offer little reference to current aboveground vegetation, but rather offer insight into past vegetation history as well as future vegetation assemblages. Worldwide, many of the species that characteristically form seed banks are early successional species. A community study was done for the seed bank based on the species that germinated and were identifiable at termination of the project (6 months after initiation). Three clusters of species could be identified. One group comprised 32 generalist species that occurred in both reference and invaded sections of the rivers. A second group comprised 39 species associated with invaded sites, and a third group of 40 species that was associated with reference sites. A few sub-community groups were found within both the “reference” and “invaded” community groups which were assumed to be habitat specific. Most species were “pioneer” or relatively-short lived, early-successional species which play a vital role in the initial post-disturbance vegetation cover, and facilitate establishment of later successional species. Seed banks are notoriously variable over space and time, and floristic representation is often biased as a result of differences among species in seed production, dispersal and longevity in the soil. The general consensus is that seeds have an irregular, clustered spatial distribution that is dictated by both biological and environmental factors. Within river systems, the irregular clustering can be exceptionally skewed with the influence of pockets of high sediment deposition along the bank. Environmental factors that were found to significantly skew germination results were the presence of fire, as well as the extent and intensity of invasion (duration and cover). The high level of diversity and abundance in reference Berg River mountain stream seed banks was perceived to be a direct result of a moderate fire frequency (between 8-15 years) and the relatively natural state of the vegetation (i.e. very little invasion). Also, diversity and richness of indigenous species from the Wit and Molenaars Rivers were substantially higher in the invaded samples than the reference samples, probably because both river systems have a long history of invasion and other anthropogenic disturbances which would have an effect on the samples from “reference” sections (i.e. even a 25% presence of IAPs seems adequate enough to alter the composition of the seed bank). Correspondence analyses showed that species had clear affinities towards different levels of “key” riparian environmental variables (fire, invasion and anthropogenic disturbance). Most species were associated with moderate levels of fire frequency, invasion history, and anthropogenic disturbance. Comparisons of seed bank species assemblages between the lateral and longitudinal variables of the rivers offered insights into the habitat requirements of certain fynbos and riparian species. Most significant were the results from bank zone comparisons which showed distinct species groupings along the different moisture bands. As could be expected, riparian species were best represented within the wet bank zones and fynbos species within the dry bank zone, while species characteristic of both zones occurred in the transitional zone, making this seed bank zone the richest in species. Mountain stream sections were richer and more diverse than foothill sections over both invaded and reference samples. This is hypothesised to be linked to lower levels of anthropogenic disturbance experienced in the mountain stream sections. The impact of invasion on the riparian seed bank was most clearly shown through the correspondence analyses for the 20 most frequently occurring species. The seed bank assembly patterns were clearly defined by the state of the river (reference or invaded). Interestingly, this pattern was evident at all three spatial scales; landscape (rivers), reach (mountain stream and foothill sections) and habitat (dry, wet and transitional zones). The reference seed bank assemblage was more tightly grouped, implying that the species were more closely associated with each other and less variable than those of the invaded seed bank assemblages. The species groupings within the invaded seed banks were influenced by variables such as reach and zone, whereas the reference seed bank assemblages seem relatively unaffected by these variables. This implies that the presence of invasive alien plants creates additional variation within the seed bank which alters the natural groupings. At a broad scale, the invaded seed banks were less species rich. This means that not only will the resulting seedling community be harder to predict, but it will also have fewer species. However although generally lower in species richness, the seed banks from almost all invaded rivers interestingly showed a higher diversity of indigenous species than their reference counterparts. This is very promising in terms of rehabilitation of post-cleared riparian sites, but more information is needed to understand the seed bank composition and determine how sustainable the seed banks are for rehabilitation in the long-term. All invaded sections had fewer herbaceous perennial species but more herbaceous annual species. Graminoids made up 50% or more of the seed bank regardless of state (reference or invaded), while woody species (shrubs/shrublets) were generally more prevalent in the reference samples. These results imply that following the removal of invasive alien plants, the vegetation to regenerate from the seed bank is likely to comprise of short-lived, herbaceous species that are not necessarily an accurate reflection of the indigenous riparian community. It is however important to note that this study investigated only the species that were able to germinate over the study period (6 month germination period). Many riparian species may not have been represented because they are either late germinators or may not be present in the soil seed bank at all. In order to gain a holistic understanding of riparian community recruitment, it is recommended that seed bank studies such as this one be included in a more broad scale, long term investigation which takes into account various reproductive strategies used by riparian species. Research of this nature is in its infancy worldwide and there are many challenges involved in measuring diversity and change in these systems. However, within the scope of this study, I suggest that these results shed light on previously unanswered and important questions regarding the ecology of seed banks in the riparian ecosystems of the Western Cape.

Thesis (MScAgric)--Stellenbosch University, 2013.
ENGLISH ABSTRACT: Soil is a fundamental, non-renewable resource in any ecosystem. To uphold food production for increasing global human populations, it is imperative to develop ways in which to sustain healthy biological productivity and sustainability of agricultural soils. Nematodes are one of the most abundant groups of Metazoa occurring in all soils, and form an integral part of the soil food web at several trophic levels. They respond rapidly to changes within their environments, and can easily be extracted from soil, identified and characterised into functional guilds. Nematodes thus have the potential to impart insight into the condition of the soil food web. This study aims to establish whether nematodes will be suitable bio-indicators of soil health for the deciduous fruit industry in the Western Cape. Three different objectives have been set to determine the practical use of nematode community structures as a tool for the measurement of soil health. The objectives include describing the nematode community structure, biodiversity and functionality within Fynbos soils; the characterization of organic and conventional orchards; and the differences in nematode soil communities in differently managed soils in an apple orchard. The number of nematodes in each soil sample was quantified and identified to family level. The nematode biodiversity and functionality for each site was determined by evaluating the nematode food webs for trophic group distribution, as enumerated by the Maturity Index (MI), the Enrichment Index (EI), the Structure Index (SI), the Basal Index (BI) and the Channel Index (CI), based on the weighted abundance of coloniser-persister guilds. The functional guild analysis of Fynbos samples indicated that the enrichment and the structure of any given sample were not bound to a certain area, but it was representative of each of the four quadrats within the faunal analysis. Different geographic areas were found to differ in nematode diversity and functionality, which was mainly associated with dominant plant families and species (such as strong associations between Fynbos families Fabaceae, Solanaceae and Celestraceae with the nematode family Pratylenchidae). The most abundant nematode families present in the Fynbos were Tylenchidae, which are plant-feeding nematodes, and Cephalobidae which are bacterial-feeding nematodes. Despite Tylenchidae and Cephalobidae both having coloniser-persister values (cp-values) of two, they are split up into different feeding types. Cp-2 nematodes are tolerant to disturbances, and occur in all environments. Only one omnivorous family, the Dorylaimida, was identified in Fynbos samples. The average MI value for Fynbos was found to be very low, with a mean value of 1.26. The value obtained indicated the presence of taxa with tolerance to disturbance, which, in turn, indicated the presence of a disturbed soil, in general. The number of plant-parasitic nematodes within the Fynbos soils was low, which was supported by the low plant-parasitic index (PPI) of 0.85. The diversity, richness and evenness values were low, indicating low nematode diversity, but a distribution of abundances amongst the families. The average Hill’s N0 index value was 8.0, indicating that, in general, eight nematode families would have been present in a Fynbos soil sample. A study was done to determine the biodiversity and the functionality of the nematodes associated with deciduous fruit orchards that were conventionally, or organically, managed. Herbivores were dominant in all the orchards. The organic apple orchard had the lowest numbers of herbivores and fungivores, with the highest number of carnivores. When comparing organic and conventional apricot orchards, higher numbers of plant-parasitic nematodes were found in the organic orchard. Criconematidae occurred in higher numbers in conventional apricot orchard soil. When comparing organic apricots and apples, higher numbers of Criconematidae occurred within the organic apple soil. Overall, higher levels of plant-parasitic nematodes occurred in the organic apricot orchard. The MI indicated that all orchard soils had values below 1.5, indicating disturbance. Conventionally managed apricot orchard soil had the highest MI value of 1.48. The PPI value was highest in organically managed apricot orchards. All orchard soils were located within Quadrat B of the faunal analysis, indicating enrichment and structure. Regarding the diversity, richness and evenness of the distribution, conventional apricot soil had the highest species richness, while organic apple soil had the most even family distribution. Different management practices did not show marked differences in community composition and structure. The species richness of Fynbos soils was comparable to those of deciduous fruit orchards. Soil samples from eight different soil surface treatments were collected from an apple orchard in the Grabouw area. Treatments were combined according to the soil surface treatments received (chemical control of cover crops and weeds, mulch and mulch + effective micro-organism spray). Bacterivores were dominant in all soil treatments, with the least number being present in the chemical control (of cover crops and weeds) treatment. Sites which received chemical control of cover crops and weeds had higher levels of fungivores, compared to the levels at the other sites. High numbers of Rhabditidae occurred within mulch and mulch + effective micro-organism (EM) treatment sites, while high numbers of Aphelenchidae occurred in chemical control sites. The carnivorous family Ironidae only occurred in mulch + EM sites. Strong associations were found between soil surface applications and nematode families present within the soil. Chemical control (of cover crops and weeds) applications had the highest MI value, while values were equal for the other soil applications. The faunal analysis indicated that the mulch and the chemical control fell within Quadrat A, indicating enriched, but unstructured, soil, while the mulch + EM treatment fell within Quadrat B, indicating enrichment and structure, as well as good overall soil conditions. All the systems were dominated by bacterial decomposition pathways. Controversially, sites that received chemical control of the cover crops and weeds had the highest species richness of all three applications, as well as the highest level of diversity, according to the Simpson Index. As only the cover crops and the weeds were chemically controlled, the soil can be regarded as undisturbed, which explains the results obtained in this study. Clear differences in nematode community structure and composition were observed between the different soil applications in the apple orchard.
AFRIKAANSE OPSOMMING: Grond is 'n fundamentele, nie-hernubare hulpbron binne enige ekosisteem. Ten einde voedselproduksie vir die toenemende globale menslike bevolking te handhaaf, is dit noodsaaklik om maniere te ontwikkel om gesonde biologiese produktiwiteit en volhoubaarheid van landbougrond in stand te hou. Nematodes is een van die volopste Metazoa in alle gronde en vorm 'n integrale deel van die grond voedsel-web op verskeie trofiese vlakke. Hulle reageer vinnig op veranderinge binne hul omgewings, kan maklik ekstraheer en identifiseer word; en ook maklik in funksionele gildes ingedeel word. Nematodes het ook die potensiaal om insig oor te dra ten opsigte van die toestand van die grond voedsel-web. Hierdie studie het ten doel om vas te stel of nematodes geskikte bio-indikatore van grond gesondheid kan wees spesifiek vir die sagtevrugte bedryf in die Wes-Kaap. Drie verskillende doelwitte is gestel om die praktiese gebruik van nematode populasie samestelling as 'n instrument vir die meting van grond gesondheid te gebruik. Die doelwitte sluit in die nematode populasie samestelling, biodiversiteit en funksionaliteit binne natuurlike Fynbos; organies verboude versus konvensionele boorde; en die verskil in nematode populasie samestelling tussen verskillend behandelde en bestuurde grondpersele binne ʼn appel boord. Die nematode biodiversiteit en funksionaliteit vir elke perseel was bepaal deur die evaluering van die nematode voedselweb vir trofiese groep verspreiding en enumerering deur die Maturity Index (MI) en die Enrichment Index (EI), Strukturele Indeks (SI), Basale Indeks (BI) en Channel Index (CI) wat gebaseer is op die geweegde oorvloed van koloniseerder-persister gildes. Die funksionele gilde vir Fynbos monsters het aangedui dat die verryking en struktuur van enige gegewe perseel nie gebonde is aan ʼn bepaalde gebied nie, aangesien dit verteenwoordig was in elk van die vier kwadrante van die Fauna Analiseerder. Daar is gevind dat verskillende areas verskil in nematode diversiteit en funksionaliteit, wat hoofsaaklik geassosieer was met die dominante plant families en spesies in die omgewing. Die volopste nematode familie wat teenwoordig was in die Fynbos was Tylenchidae, wat plant-voedende nematodes is, en Cephalobidae, wat bakterie-voedend is. Tylenchidae en Cephalobidae het beide ʼn cp-waarde van twee, maar is verdeel in verskillende VIII tipes voedingsgroepe. Die cp-2 nematodes is verdraagsaam vir versteurings en kom in alle omgewings voor. Slegs een omnivoor familie is geïdentifiseer in Fynbos monsters, nl. die Dorylaimidae. Die gemiddelde MI waarde vir Fynbos was laag, met 'n gemiddelde waarde van 1.26. Hierdie waarde is ʼn aanduiding van die teenwoordigheid van taxa met verdraagsaamheid tot versteuring, wat op sy beurt 'n versteurde grond in die algemeen aangedui het. Die aantal plant-parasitiese nematodes binne die Fynbos-gronde was laag, wat ondersteun word deur die lae PPI-waarde van 0.85. Die waardes vir die diversiteit, spesie-rykheid en egaligheid was laag, wat dui op 'n lae nematode diversiteit, maar 'n egalige verspreidings onder families. Die Hill’s N0 indeks waarde was gelyk aan 'n gemiddelde van 8.0 en dui daarop dat in die algemeen agt nematode families teenwoordig sal wees in 'n Fynbos grondmonster. 'n Studie is gedoen om die biodiversiteit en funksionaliteit van nematodes wat verband hou met vrugteboorde wat organies en konvensioneel bestuur is te bepaal. Herbivore was dominant in alle boorde. Organiese appels het die laagste aantal herbivore en fungivore gehad en die hoogste aantal karnivore. Wanneer organiese en konvensionele appelkoosboorde met mekaar vergelyk is, was hoër getalle van plant-parasitiese nematodes gevind in die organiese boord. Criconematidae was teen ʼn groter aantal in die grond van die konvensionele appelkoosboord gevind. Met die vergelyking van organiese appelkose en appels word, is ʼn hoër aantal Criconematidae binne die organiese appelgrond aangetref. In die algemeen was hoër vlakke van plant-parasitiese nematodes gevind in die organiese appelkoosboord. Die MI het getoon dat alle boord waardes laer as 1.5 gehad het, wat daarop dui dat die gronde versteurd is. Die konvensioneel bestuurde appelkoosboord het die hoogste MI waarde gehad met ʼn vlak van 1.48. Die waarde vir die PPI was die hoogste in organies bestuurde appelkoosboorde. Alle boord gronde is geleë binne kwadrant B van die Fauna Analiseerder, wat dui op verryking met struktuur. Met betrekking tot die diversiteit, spesie-rykheid en egaligheid van die verspreiding van families, het konvensionele appelkoos grond die hoogste spesierykheid, terwyl die gronde van die organiese appelboord die mees egalige familie verspreiding vertoon het. Verskillende bestuurspraktyke nie toon nie merkbare verskille in die gemeenskap samestelling en struktuur nie. Die spesie-rykheid van Fynbos gronde is vergelykbaar met dié van sagtevrugte-boorde. Monsters is geneem van agt verskillende grondeoppervlak-behandelings in ‘n appelboord in die Grabouw area. Die behandelings is gekombineer volgens die grond toediening wat dit ontvang het (chemiese beheer van dekgewasse en onkruid, deklaag en ‘n deklaag + effektiewe mikro- IX organismes). Bakterievoedende nematodes was dominant in elke grondoppervlak-behandeling, met die minste teenwoordig in die behandelings wat chemiese beheer van die dekgewasse en onkruid ontvang het. Behandelings wat chemiese beheer van die dekgewasse en onkruid ontvang het, het ook hoër vlakke van fungivore in vergelyking met die ander behandelings. ʼn Hoë aantal Rhabditidae het voorgekom in grondmonsters van die deklaag en die deklaag + EM (effektiewe mikro-organismes) behandeling persele, terwyl ʼn groot aantal Aphelenchidae voorgekom het in chemiese beheer persele. Die predatoriese familie, Ironidae, het slegs voorgekom in persele wat die deklaag + EM behandeling ontvang het. Sterk assosiasies bestaan tussen grond behandeling en nematode families wat in die grond teenwoordig was. Die chemiese beheer behandeling het die hoogste MI waarde getoon, terwyl waardes vir die ander behandelings laer en gelyk was. Die fauna analise het daarop gedui dat die deklaag en chemiese beheer binne kwadrant A is en dus verryk, maar ook ongestruktureerd is. Die deklaag + EM behandeling het binne kwadrant B geval wat aandui op toestande van verryking en struktuur wat 'n goeie algehele grondtoestand tot gevolg gehad het. Al die stelsels is oorbruggingsweë wat oorheers was deur bakteriële ontbinding. Kontroversieel, het persele wat chemiese beheer van die dekgewasse en onkruid ontvang het, die hoogste spesierykheid van al drie behandelings getoon asook die hoogste vlak van diversiteit volgens die Simpson-indeks. Slegs die dekgewasse en onkruid is chemies behandel, nie die grond nie, en dus kan die grond as onversteurd beskou word en die resultate wat verkry is in die studie verklaar. Duidelike verskille in die nematode gemeenskap struktuur en samestelling is waargeneem tussen die verskillende grond behandelings in appel boorde.

Thesis (MScConsEcol (Conservation Ecology and Entomology))--University of Stellenbosch, 2010.
ENGLISH ABSTRACT: Riparian ecosystems of the Mediterranean south-western Cape region are projected to experience significant decreases in streamflow due to climate change and increased demands for water associated with human demographic trends and increasing living standards. Aggravating this problem are woody invasive alien plants, such as Acacia mearnsii, whose impacts, including those on catchment water yields, have justified extensive eradication programmes such as Working for Water (WfW). WfW has been highly successful in managing invasive alien species in some areas, while at the same time enhancing the quality of life of poor South Africans. Unfortunately, the managers of these eradication initiatives often experience a lack of information on the species- and site-specific ecological properties that may aid in prioritising sites more prone to invasion, essentially inhibiting accurate management output. Knowledge, such as that associated with the possible future distribution of invasive species in a changing environment, may help to optimise eradication initiatives. I therefore determined whether woody plants portray different physiological (vulnerability to cavitation) and wood anatomical traits (wood density, vessel resistance to implosion, vessel lumen and wall diameters) across three prominent riparian zones in the south-western Cape that each differ in streamflow quantity – to gain a mechanistic understanding of how woody species, especially invasive species, adapt their hydraulic strategy across this proxy for water availability. Using factorial ANOVA’s, to distinguish any differences in plant physiological and wood anatomical responses to water availability within and between species, showed Acacia mearnsii having consistently higher drought-tolerance (lower P50 values and denser wood) compared to native species under reduced water availability. These results supported the significant variation in drought-tolerance strategies that exist within and between taxonomically different species across different environments. Water availability thus has a strong selective effect on functional traits of species; however, minimum water potentials were more useful in describing in situ hydrological conditions than streamflow. Additionally, a non-causal relationship between wood anatomical traits and drought-induced cavitation was observed. Therefore, using only wood anatomical measurements to assess drought-tolerance of species might not be accurate across all species. This mechanistic approach to assess the invasive potential of species under projected drier conditions has great practical value. It can be used to improve species selection for restoration initiatives, and is of great value for future use in prioritizing eradication programmes.
AFRIKAANSE OPSOMMING: Rivieroewer ekosisteme in die Mediterreense Suidwes-Kaap streek kan groot afnames in stroomvloei verwag, wat meestal toegeskryf kan word aan klimaatsverandering en die verhoogde aanvraag na water geassosieerd met stygende populasiegrootte. Uitheemse indringerplante soos Acacia mearnsii vererger hierdie probleem. Laasgenoemde spesies plaas groot druk op opvanggebiede se water opbrengs, en vorm grootliks die rede waarom uitroeiing programme soos Werk vir Water (WfW) gestig is. WfW het al groot suksesse behaal in die bestuur van uitheemse indringerplante, en terselfdertyd die lewenskwaliteit van arm Suid-Afrikaners verhoog. Ongelukkig sukkel hierdie indringer uitroeiing inisiatiewe telkens met ongenoegsame bewyse wat kan help om leiding te verskaf by die prioritisering van areas meer geneig tot indringing. Die gevolg is dat onvoldoende bestuurs besluite gemaak kan word. Gevolglik sal kennis geassosieerd met die moontlike toekomstige verspreiding van hierdie indringerplant in ʼn veranderlike omgewing help om uitroeiing programme meer akkuraat te stel en gevolglik waardevol wees t.o.v. prioritisering van kwesbare areas. Die doel van hierdie studie was om die kwesbaarheid van sleutel inheemse houtagtige rivier spesies en veral die dreigende indringerplant Acacia mearnsii, te bestudeer in terme van verlaagde stroomvloei soos voorspel vir die Wes-Kaap fynbos ekosisteem. Deur te bepaal of houtagtige plante verskillende fisiologiese (kwesbaarheid teen xileem blokkasie) en anatomiese (hout digtheid, vat weerstandbiedendheid teen inmekaarkolking, vat holte en wand deursnee) hidrologiese eienskappe tentoonstel gemeet tussen drie prominente rivieroewer sones in die suidwes Kaap wat variëer in stroomvloei kwantiteit, verskaf ʼn meganistiese begrip van hoe spesies, veral die indringerplante, hul hidrologiese strategieë ten opsigte van droogtes kan aanpas. Faktoriële ANOVAS’s tussen spesies en liggings het getoon dat beide plant fisiologiese en hout anatomiese data beduidend variëer tussen taksonomies verskillende spesies. Veral Acacia mearnsii het deurgaans laer P50 waardes asook hoër houtdigtheid getoon, ‘n teken van hierdie spesies se verhoogde droogte toleransie in vergelyking met die inheemse spesies. Wat beduidend is is dat spesies-spesifieke lewensstrategieë ten opsigte van droogte toleransie in hierdie rivieroewer sones voorkom. Resultate het bevestig dat water beskikbaarheid ʼn groot rol speel in die seleksie van funksionele karaktereienskappe in plante, maar, dat minimum water potensiaal meer akkuraat was om in situ hidrologiese toestande te beskryf as wat stroomvloei kon. Die verhouding tussen plant fisiologiese en hout anatomiese karaktereienskappe was indirek as gevolg van spesies-spesifieke lewensstrategieë. Gevolglik sal die allenige gebruik van hout anatomiese eienskappe om droogte toleransie in plante te assesseer onakkuraat wees omdat daar ʼn swak verhouding tussen hout anatomie en droogte-geïnduseerde xileem blokkasie bestaan. ʼn Meganistiese benadering om die indringing potensiaal van spesies onder voorspelde droër kondisies te assesseer, asook om spesies seleksie vir restourasie doeleindes op te skerp, is prakties uitvoerbaar, en van groot waarde vir toekomstige gebruik in uitroeiing en restourasie inisiatiewe.

Thesis (MScFor)--Stellenbosch University, 2002.
ENGLISH ABSTRACT: The invasive Australian acacia, A. sa ligna, is widespread in the Western Cape, South Africa, and is widely used by local communities. Not surprisingly, the introduction of the biological control agent, the fungus Uromycladium tepperianum in 1987 was received with mixed emotions. In an effort to determine the socio-economical and ecological impact of the fungus, the Department of Water Affairs and Forestry has commissioned a study, of which this thesis forms part. For this thesis, a number of parameters, environmental as well as biological, were sampled, analyzed and compared with existing data from previous studies. The goal was to obtain a comprehensive estimation of the effect of A. saligna on a Sand Plain Fynbos community near Atlantis and to assess whether or not, the detrimental effect A. saligna has on plant biodiversity, has reached the stage where it has become irreversible. The floristic data confirmed results from earlier studies, that invasion of A. saligna in Fynbos communities induces a decline in plant diversity, especially in dense acacia thickets. This study mainly revealed structural changes rather than community shifts. The enrichment of the soil as noted by others authors was also confirmed for the study area. However, it was outside the scope of this study to determine the long-term effects of this enrichment on the Sand Plain Fynbos communities. Soil moisture content was sampled on three different occasions, in densely invaded and uninvaded study plots. The aim was to see if A. saligna had any influence on the availability of water in the upper soil. Contrary to expectations, moisture content under acacia stands was higher in spring and early summer in the top soil than in pristine fynbos. Pitfall traps were used to sample the arthropods that dwell the surface of the study area. For arthropods in general, the survey did not produce conclusive data, but spider species seem to be positively affected by the presence of A. saligna, probably due to the structural diversity they add to the fynbos. This study revealed that the full ecological impact of A. saligna on its environment is far from understood, mainly due to the richness and complexity of the fynbos communities and a lack of research about faunal aspect of the Fynbos ecosystem.
AFRIKAANSE OPSOMMING: Die Australiese akasia, A. saligna, is wydverspreid in die Wes-Kaap, Suid-Afrika, en word dikwels gebruik deur die plaaslike gemeenskap. Dit is dan nie verbasend dat die invoering van die biologiese bestrydingsmiddel, die swam Uromycladium Tepperianum in 1987, met teenstrydige emosies ontvang is nie. In 'n poging om die sosio-ekonomiese en ekologiese impak van die swam te bepaal, het die Department van Waterwese en Bosboukunde 'n ondersoek aangevra waarvan die tesis deel vorm. Vir die tesis word 'n aantal parameters, omgewings sowel as biologies, geproef, geanaliseer en vergelyk met bestaande data van vroeër navorsing. Die doel van die studie is om te bepaal watter effek A. saligna op 'n sandpleinfynbos gemeenskap naby Atlantis het en om sodoende vas te stelof die nadelige effek van A. saligna op die biodiversiteit onomkeerbaar is. Plantaardige data bevestig resultate uit vroeër studies dat A. saligna 'n afuame in plant diversiteit, veral in digte akasiabosse, veroorsaak. In die studie word getoon dat die toename van A. saligna strukturele veranderings in plaas van gemeenskaplike verskuiwings tot gevolg het. Die verryking van die grond, deur ander navorsers genoteer, word ook in die studie bevestig. Dit is egter buite die veld van studie om die lang termyn gevolge van die verryking van die grond op die sandpleinfynbosgemeenskap te beslis. Op drie verskillende geleenthede word die watergehalte van die grond getoets onder die akasiabosse en die fynbos. Die doel van die toetse is om vas te stel hoe A. saligna die beskikbaarheid van water in die boonste grondlaag beïnvloed. In teenstelling is hoër vogtigheidsvlakke in die boonste grondlaag onder die akasiabosse as onder die fynbos gevind gedurende lente en vroeë somer. Lokvalle is gebruik om monsters te neem van die antropodieë woonagtig op die oppervlak van die studiearea. Oor die algemeen is die opname vir die antropodieë onvoldoende. Dit is egter insiggewend dat die spinnekopspesies voordeel trek uit die aanwesigheid van A. saligna. Dit is waarskynlik omdat die akasia strukturele diversiteit aan die fynbos verleen. Die studie onthul dat die volle ekologiese impak van A. saligna op sy omgewing moeilik verstaanbaar is as gevolg van die diversiteit en kompleksiteit van fynbos asook 'n gebrek aan navorsing.

Thesis (MSc (Microbiology))--Stellenbosch University, 2008.
The soil environment is thought to contain a lot of the earth’s undiscovered biodiversity. The aim of this study was to understand the extent of microbial diversity in the unique ecosystem of the Western Cape’s fynbos biome. It is known that many processes give rise to this immense microbial diversity in soil. In addition the aim was to link microbial diversity with the soils physio-chemical properties as well as the plant community’s structure. Molecular methods especially automated ribosomal intergenic spacer analysis (ARISA) was used in the study. The most important property of environmental DNA intended for molecular ecology studies and other downstream applications is purity from humic acids and phenolic compounds. These compounds act as PCR inhibitors and need to be removed during the DNA extraction protocol. The fist goal in the study was to develop an effective DNA extraction protocol by using cationic locculation of humic acids. The combination of cationic flocculation with CuCl2 and the addition of PVPP and KCl resulted in a high yield of DNA, suitable for PCR amplification with bacterial and fungal specific primers. Determining the reproducibility and accuracy of ARISA and ARISA-PCR was important because these factors have an important influence on the results and effectiveness of these techniques. Primer sets for automated ribosomal intergenic spacer analysis, ITS4/ITS5, were assessed for the characterization of the fungal communities in the fynbos soil. The primer set delivered reproducible ARISA profiles for the fungal community composition with little variation observed between ARISAPCR’s. ARISA proved useful for the assessment and comparison of fungal diversity in ecological samples. The soil community composition of both fungal and bacterial groups in the Sand fynbos was characterized. Soil from 4 different Sand fynbos sites was compared to investigate diversity of eubacterial and fungal groups at the local as well as a the landscape scale. A molecular approach was used for the isolation of total soil genetic DNA. The 16S-23S intergenic spacer region from the bacterial rRNA operon was amplified when performing bacterial ARISA from total soil community DNA (BARISA). Correspondingly, the internal transcribed spacers, ITS1, ITS2 and the 5.8S rRNA gene from the fungal rRNA operon were amplified when undertaking fungal ARISA (F-ARISA). The community structure from different samples and sites were statistically analysed. ARISA data was used to evaluate different species accumulation and estimation models for fungal and bacterial communities and to predict the total community richness. Diversity, evenness and dominance were the microbial communities were used to describe the extent of microbial iversity of the fynbos soils. The spatial ordination of the bacterial and fungal species richness and diversity was considered by determining the species area relationship and beta diversity of both communities. The correlation between the soil physio-chemical properties was determined. The plant community structure data was correlated with the fungal and the bacterial community structure. The results indicated that bacterial species numbers and diversity were continually higher at the local scale. Fungi however showed higher species turnover at the landscape scale. Bacterial community structure showed stronger links to the plant community structure whereas the fungi community structure conformed to spatial separation patterns. To further investigate the diversity of soil microbes the potential of genus specific primes was investigated. The genus Penicillium is widespread in the soil environment and the extent of its diversity and distribution is however not. For this reason Penicillium was chosen as a model organism. To expand the insight into the diversity of Penicillium species in the fynbos soil ecosystem, a rapid group specific molecular approach would be useful. Penicillium specific primers targeting the 18S rRNA ITS gene region were evaluated. Fungal specific primers ITS4 and ITS5, targeting the internal transcribed region (ITS) were used to target Penicillium specific in the soil sample. Nested PCR, using primer Pen-10 and ITS5, was then utilized to target Penicillium species specifically. The discrimination of Penicillium species was possible due to length heterogeneity of this gene region. Eight different peaks was detected in the soil sample with ARISA and eight different species could be isolated on growth media. The technique proved useful for the detection and quantification of Penicillium species in the soil.

Thesis (MSc)--University of Stellenbosch, 2002.
ENGLISH ABSTRACT: Five new species of ophiostomatoid fungi, colon ising the infructescences of serotinous Protea species, have recently been discovered in South Africa. Prior to this, ophostomatoid fungi were thought to be restricted to the Northern Hemisphere. The discovery of these five species thus extensively expanded the known geographical range of these fungi, now also to include the Southern Hemisphere. Since this discovery, few studies have focused on the interesting ecology of this group, which is uniquely adapted for spore dispersal by arthropods. Studies focussed on ophiostomatoid fungi provide an unique opportunity to study inter-organism interactions between fungi, their host plants and the arthropods responsible for their spore dispersal. Very few similar studies have been undertaken, particularly in the Fynbos Biome, to which most of our economically important Protea species are confined. The current study provides insight into some ecological aspects of these complex interactions. The seasonal distribution of the ophiostomatoid fungi associated with the infructescences of members of the Proteaceae was investigated. Definite seasonal patterns were observed, with peak fungal colonisation occurring during the wetter winter months. While determining the host specificity of these fungi, a new Protea host for Ophiostoma splendens was identified, and a new species of Rhyncomeliola was discovered. All ophiostomatoid species native to Fynbos in the Stellenbosch region are exclusively associated with the infructescences of species in the plant genus Protea. By employing a multiplex Polymerase Chain Reaction (PCR), a set of group specific primers was developed for the identification of South African Ophiostoma and Gondwanamyces fungal DNA. This newly developed method was used to scan arthropods collected from the infructescences of P. repens for the presence of 0. splendens and G. proteae spores. By using these group-specific primers, three insects possibly responsible for long range dispersal of fungal spores were identified. Three further insect species, possibly contributing to the short-range dispersal of ophiostomatoid spores, were also implicated through this method. All arthropods associated with the fruiting structures of selected members of the Proteaceae were also investigated. A total of 62 pseudospecies (ca. 7500 individuals), belonging to 45 different arthropod families, were collected. Proteaceae species with larger fruiting structures housed more arthropod species and higher numbers of individuals than Proteaceae taxa with smaller fruiting structures. Some plant species housed similar arthropod communities, while others housed unique suites of arthropods. Seasonal patterns in arthropod numbers were observed, and it was found that, in most instances, arthropod numbers peaked during the autumn and winter months. Twenty-five fungal taxa were isolated from various Proteaceae arthropods, many of which are genera known to include Proteaceae pathogenic species. Ophiostomatoid fungi have a saprophytic relationship with their Protea hosts, and may deter some of these potentially harmful fungi from colon ising the infrutescences. Some fungi showed a high degree of specificity towards potential vectors, while others were found on a diverse range of arthropods. This study highlights the existence of complex inter-organismal interactions within the Fynbos Biome, a study area where the interactions between plants, fungi and insects have been grossly neglected. The few studies that have been conducted in this field have mostly focussed on a limited number of organisms, and no wide-scale attempts, such as presented here, have been published. It is important to obtain a holistic view in any ecological study that focuses on interactions between different suites of organisms. Ultimately this will aid in the development of better conservation strategies. This study thus provides a muchneeded start in studies on multi-organismal interactions in the Fynbos Biome.
AFRIKAANSE OPSOMMING: Vyf nuwe ophiostoma-agtige fungus spesies is onlangs in die vrug-liggame van Suid Afrikaanse Protea plante ontdek. Voor hierdie ontdekking, was die algemene opvatting dat ophiostoma-agtige fungi beperk is tot die Noordelike Halfrond. Die ontdekking van hierdie vyf spesies het dus die bekende geografiese verspreiding van hierdie tipe fungi vergroot om nou ook die Suidelike Halfrond in te sluit. Sederdien het min studies gefokus op die interesante ekologie van hierdie groep, wat aangepas is vir spoorverspreiding deur geleedpotiges. Studies wat fokus op die ophiostoma-agtige fungi voorsien 'n unieke geleentheid om die inter-organismiese-interaksies tussen fungi, hul gasheer plante en die geleedpotiges wat hul spore versprei, te bestudeer. Baie min soortgelyke studies is al voorheen in die Fynbos Bioom, waar die meeste van ons ekonomies-belangrike Protea spesies voorkom, onderneem. Die huidige studie verleen meer inligting oor sommige ekologiese aspekte van hierdie komplekse interaksies. Seisoenale verspreidingspatrone van ophiostoma-agtige fungi geassosieer met die vrug-liggame van lede van die Proteaceae, is ondersoek. Daar is defnitiewe seisoenale patrone in die aanwesigheid van fungi gevind, met 'n piek in fungi kolonisasie-getalle gedurende die vogtiger wintermaande. 'n Nuwe Protea gasheer vir Ophiostoma splendens en 'n nuwe fungus spesie (Rhyncomeliola sp.), is ontdek. Alle Fynbos ophiostoma-agtige spesies in die Stellenbosch area, is beperk tot Protea spesies. 'n Multipleks Polimerase Ketting Reaksie is ontwikkel om die spesifieke DNS van ophiostoma-agtige fungi te herken. Hierdie metode is gebruik om te toets vir die aanwesigheid van spore van hierdie fungi op die liggame van geleedpotiges (geassosieerd met P. repens). Hierdeur is drie insekte wat waarskynlik verantwoordelik is vir die langafstand verspreiding van spore geidentifiseer. Drie verdere insekte wat moontlik verantwoordelik is vir die kortafstand verspreiding van ophiostoma-agtige fungi is ook aangewys. Alle geleedpotiges geassosieer met die vrugstrukture van geselekteerde lede van die Proteaceae is ondersoek. 'n Totaal van 62 pseudo-spesies (omtrent 7500 individue), wat tot 45 families behoort, is versamel. Proteaceae spesies met groter vrugstrukture het meer geleedpotige spesies en individue gehuisves as taksa met kleiner vrugstrukture. Sommige plant spesies het soortgelyke geleedpotige gemeenskappe gehuisves, terwyl unieke groepe geleedpotiges in ander plante voorgekom het. Alhoewel die geleedpotiges seisonale variasies in getalle geopenbaar het, het die meeste groepe 'n piek in getalle getoon gedurende die herfs- en wintermaande. Vyf-en-twintig fungi taksa is geïsoleer vanaf verskeie Proteaceae geleedpotiges. Sommige van hierdie is genera wat Proteaceae patogeniese spesies insluit. Sommige fungi het 'n hoë graad van spesifisiteit teenoor potensiële vektore getoon, terwyl ander weer algemeen op verskeie geleedpotige spesies gevind is. Hierdie studie dui op die bestaan van komplekse inter-organismiese-interaksies in die Fynbos Bioom, in 'n area waar die studie van interaksies tussen plante, fungi en insekte nog baie min aandag geniet het. Die beperkte aantal studies wat tot dusver in hierdie veld onderneem is, fokus gewoonlik slegs op 'n paar organismes. Geen grootskaalse studies, soos die een hier voorgelê, is al gepubliseer nie. In enige ekologiese studie wat fokus op interaksies tussen verskeie organismes, is dit belangrik om 'n holistiese siening te probeer verkry. Uiteindelik sal dit bydra tot die ontwikkeling van beter bewarings-strategië. Hierdie studie verleen dus 'n noodsaaklike begin tot studies op multiorganismiese- interaksies.

Thesis (MScConEcol (Conservation Ecology and Entomology))--University of Stellenbosch, 2011.
ENGLISH ABSTRACT: Insect pollinators play an important role in producing crops in global agriculture. Pollinatordependent crops contribute to maintaining a healthy variety in the human diet and often have a high market value, beneficial for local or regional economies. Insect crop pollinators can either be from natural areas adjacent to orchards, or they can be brought into orchards by beekeepers that manage them. Pollination by wild pollinators is an ecosystem service, while managed pollinators (mostly honeybees) is a humanly managed service, considered not to be related to the ecosystem. Ecosystem services and their economic value have often been used as an incentive for conservation, although it is sometimes difficult to characterise and quantify them. Wild and managed pollinators have been reported to be threatened in several regions around the world, and there is concern about the effect a pollination deficit may have on crop production. Different crops and cultivars have different levels of dependence on insect pollination due to a combination of biological, physical and management factors. In this study, the pollination dependence of the Granny Smith apple cultivar and the respective contributions of wild and managed pollinators are investigated in the Western Cape province of South Africa. Granny Smith apples show a significant increase in production with insect pollination (wild and managed). Managed honeybees are more abundant in orchards than wild honeybees, and also provide a better pollination service. This difference between the pollination service of wild and managed honeybees are specifically noted in the quality, where managed honeybees pollination result in significantly more seeds per fruit and consequently produce a better shaped apple. The study goes further by quantifying the ecosystem services to the managed honeybee industry through a questionnaire completed by beekeepers. It was found that 49% of the managed hives in the Western Cape rely to some extent on natural vegetation as a forage source. Furthermore 18% of honey produced is also from natural vegetation and the wild honeybee population replenish managed honeybee stocks if they become depleted. Although managed honeybees are not usually considered an ecosystem service, it is clear that they are still linked to the ecosystem via these pathways. It is thus obvious that all pollination sources are linked to the environment, not just wild pollinators. A further economic valuation of the ecosystem service studied, and to the argument for conservation of pollinators and the resources they depend on.
AFRIKAANSE OPSOMMING: Insek bestuiwing speel ‘n belangrike rol in die produksie van gewasse in landbou wêreldwyd. Gewasse wat bestuiwing-afhanklik is, dra by tot ‘n gesonde verskeidenheid in die mens se dieët en hul hoë mark waarde is voordelig vir plaaslike en streeks ekonomieë. Insek bestuiwers kan of van natuurlike areas langs boorde afkomstig wees, of bestuurde bestuiwers kan deur byeboere in boorde ingebring word. Bestuiwing deur wilde bestuiwers is ‘n ekosisteem diens, maar die byeboere verskaf ‘n bestuurde diens, wat nie altyd gereken word om aan die ekosisteem verwant te wees nie. Ekosisteem dienste en hul ekonomiese waarde word gereeld gebruik as insentief vir bewaring, alhoewel dit soms moeilik is om dit te karaktariseer en te kwantifiseer. In sekere streke wêreldwyd is dit bewys dat wilde, asook bestuurde bestuiwers, bedreig is en daar heers bekommernis dat ‘n tekort aan bestuiwers gewas produksie negatief sal beïnvloed. Verskillende gewasse en kultivars het verskillende vlakke van bestuiwing-afhanklikheid as gevolg van verskillende biologiese en fisiese faktore en bestuurspraktyke. In hierdie studie is die bestuiwings-afhanklikheid van die Granny Smith appel kultivar ondersoek, asook die bydrae van wilde en bestuurde heuningbye in die Wes-Kaap provinsie van Suid Afrika. Granny Smith appels toon ‘n betekenisvolle produksie verbetering met insek bestuiwing (wilde en bestuurde bye). Daar is ‘n groter hoeveelheid bestuurde bye in ‘n boord as wilde bye, en hulle verskaf ook dus ‘n beter bestuiwingsdiens. Die voordeel van bestuurde bye bo wilde bye word veral in vrug kwaliteit opgemerk. As bestuurde bye gebruik word, is daar betekenisvol meer sade per vrug en gevolglik het die appels ook ‘n beter vorm. Verder fokus die studie ook op die kwantifisering van ekosisteem dienste wat aan die bestuurde heuningby industrie verskaf word, deur inligting van byeboere te gebruik. Daar is bevind dat 49% van die kolonies bestuurde bye in die Wes- Kaap is tot ‘n mate afhanklik van natuurlike plantegroei vir voedsel. Verder is 18% van die geproduseerde heuning ook afkomstig van natuurlike plantegroei se nektar en byeboere vang wilde kolonies om uitgestorwe bestuurde kolonies te vervang. Dit is dus duidelik dat alle bestuiwings bronne gekoppel is aan die omgewing, nie slegs wilde bestuiwers nie. ‘n Verdere ekonomiese waardasie van die onderskeie ekosisteem dienste wat bestudeer is, voeg motivering by tot die bewaring van bestuiwers en die hulpbronne waarvan hulle afhanklik is.

An estuary is the last stage of a river. It is where the river meets the sea. Estuaries are one of the most significant features of the South African coastline. In recent years, South Africa has witnessed an increase in the demand for freshwater for both industrial and domestic purposes. At the same time, there has been a gradual deterioration of river systems and their catchments. To add to this, there has been a gradual reduction in the amount of recorded rainfall, which is the primary source of freshwater for rivers. This has resulted in decreased freshwater inflow into estuaries, a situation which poses a serious threat to the biological functioning of these estuaries and the services rendered to its recreational users. A deterioration of estuary services reduces the yield for subsistence households and their appeal for recration. This study uses the contingent valuation method as its primary methodology to elicit users' willingness-to-pay to reduce the negative impacts of reduced freshwater inflow into selected western and southern Cape estuaries. Eight estuaries were selected for this study; the Breede, Duiwenhoks, Great Berg, Kleinemond West, Mhlathuze, Swartvlei and Olifants estuaries. The contingent valuation (CV) method is widely used for studies of this nature because of its ability to capture active, passive and non-use values. The CV method involves directly asking people how much they would be willing to pay for specific environmental services. In this case, users were asked what they would be willing to pay to sustain freshwater inflows into selected estuaries in order to prevent the negative impacts of reduced inflows. The travel cost method (TCM) was uesed to generate an alternative comparative set of values for the purposes of convergence testing. This is because convergence testing is highly desirable as a validity test for CV estimates.

The Fynbos biome in south-western South Africa is a global biodiversity hotspot vulnerable to climate change. Of the six Fynbos-endemic passerines, Cape Rockjumpers (hereafter Rockjumpers; Chaetops frenatus) are most vulnerable to increases in temperature, with population declines correlated with warming, and low physiological heat thresholds. Rockjumper’s preferred mountain habitat is predicted to decrease as they lack opportunity to move to cooler regions as temperatures warm. As Rockjumpers currently occupy the coldest regions of the Fynbos, I hypothesized their thermal physiology would show cold adaptation at the expense of lowered ability to cope with higher temperatures. I aimed to determine the seasonal 1) maintenance metabolism and cold tolerance, and 2) thermoregulatory responses to high temperatures of Rockjumpers. I measured seasonal maintenance metabolic rate, thermal conductance, and maximum thermogenic capacity. I also measured seasonal resting metabolic rate, evaporative water loss, evaporative cooling efficiency, and body temperature at high air temperatures. In winter, Rockjumpers had higher maximum thermogenic capacity, lower maintenance metabolic rate, and lower thermal conductance. Lower maintenance metabolic rates (and thus, lower metabolic heat production) combined with the decreased thermal conductance, confers substantial energy savings in winter. The increased winter maximum thermogenic capacity of Rockjumpers was expected, although the mean seasonal values fell below those expected for a ~ 50 g bird using a global data set, suggesting Rockjumpers are not especially cold tolerant. I further show that in summer Rockjumpers had higher elevations in resting metabolic rates, evaporative water loss, and body temperature, denoting higher rates of heat production and lower heat thresholds in summer compared to winter. My results suggest that Rockjumpers are best suited for relatively mild Krista Oswald Dissertation Chapter 1: General Introduction temperatures. While I found further support for a physiological basis for declining Rockjumper populations, further studies on other mechanisms Rockjumpers may possess to cope with climate warming (e.g. behavioural adjustments) are needed in order to truly understand their vulnerability to climate change.

Includes bibliographical references.
The Cape Floristic Region is one of the most species-rich regions of the world. Fynbos, the Mediterranean climate shrubland which comprises the largest part of this region, is characterized by high beta diversity and high edaphic endemism. However, very few quantitative studies of the factors controlling species turnover and community boundaries exist. I used an integrated approach of broad correlation techniques and detailed field experiments, to investigate this. The study site was a landscape on the southern slopes of the Soetanysberg hills, near Cape Agulhas. This area is exceptional in its floristic and edaphic complexity. The first part of this work involved an investigation of the patterns of soil characteristics and the relationship between these and the vegetation patterns. This showed a strong vegetation-environment correlation, particularly with regard to communities. Community boundaries were strongly related to patterns of soil nutrients and physical factors (relating to moisture availability). The second part consisted of detailed studies of the factors controlling the distribution of three pairs of key species (all Proteaceae). Each species is dominant in part of the landscape and, for each species pair, the replacement of one species by the other across the study site, is very distinct. Protea susannae and P. compacta occur in deep and shallow sands respectively. Root morphology, water relations and phenology of adult ( 15 yr-old) plants were studied over two years in the field. Differences between these species constituted habitat-specialization for soils of different depth. A laboratory study of seedling morphology and water-use showed that species differences also exist at the seedling stage and these would be important in determining distribution patterns. Very little is known about the importance of interspecific competition in fynbos communities. A three-year field experiment was set up to investigate its role in determining species distribution patterns across community boundaries and soil gradients. Each of the three pairs of Proteaceae species was grown from seed in cleared plots at three sites along a transect crossing a community boundary. Their growth and survival were studied in relation to site (soil factors), density and interspecific competition (monoculture/mixture). For all species, site factors had an overriding influence on survival. Average individual biomass was determined primarily by site for three species and, for the other species, by density (irrespective of monoculture or mixture). It was concluded that soil factors are a major influence on the distribution of these species and that, while competition has an important role in determining spacing patterns within communities, it has a minor role in determining species distributions.

The Cape Floral Kingdom, known locally as "fynbos", is of great scientific and aesthetic interest as well as being economically important as a water source zone, as a source of flowers for the cut flower industry and as a recreation area. Sound ecological knowledge is required in order to manage and conserve fynbos because the extent of this unique, species-rich, endemic flora has been drastically reduced. Nutrients, in particular nitrogen and phosphorus, have been identified as being of crucial importance in the structure and functioning of fynbos ecosystems because of the nutrient poor substrates upon which this vegetation type exists. This study has concentrated on the following aspects of the nitrogen cycle which are considered to be important in describing the functioning of a coastal fynbos ecosystem: a) The nitrogen status of soils supporting coastal fynbos. b) The forms of nitrogen and the seasonal changes in nitrogen concentrations in these soils. c) The influence of fire disturbance on nitrogen form and concentration in these soils. d) An investigation of the nitrogen mineralization process in these soils in relation to control by physical factors, successional age of the stand and the impact of fire on this process. e) The uptake and utilization of different forms of nitrogen by characteristic species of fynbos vegetation. f) The importance of internal recycling of nitrogen as an adaptation to the low nutrient soils of the area. g) The role of atmospheric inputs of nitrogen to the ecosystem, in particular the importance of this source in replacing nitrogen lost during recurrent fires.

The south-western Cape of South Africa has a very endemic, specialized terrestrial flora and aquatic fauna. It has been argued that the high degree of endemism is related to the origin of the fauna, the multiplicity of habitats present and the harsh water chemistry characterized by low pH. The aim of this project was to look at the relationship between pH and endemism. Specifically I asked if there is a trichopteran and ephemeropteran fauna confined to the Cape and if this is true, I attempted to find out whether it is the acidic waters or its biogeographical origin that limits its distribution. I also attempted to identify a group of species that occurs at a wide range of pH values (i.e. pH insensitive) and another group that is intolerant of acidic waters. This was done by looking at historical data on species distribution and the pH ranges at which they were found, and these data then re-analysed in the light of fieldwork performed on the Breede River in the western Cape. A number of species within different genera ( e.g. Lithogloea, Leptecho and Agapetus) appears to be confined to the Cape. Their distribution is determined by both their origin and water chemistry conditions, which are characterised by low pH and pure, silt-free water. A warm stenothermal group, comprising Leptonema, Elassoneuria and Eatonica spp. is limited to the subtropical regions of South Africa, where water is alkaline. A eurythermal, pH-insensitive group that includes Castanophlebia calida, Ecnomus and Cheumatopsyche spp has a widespread distribution throughout the country. Lastly, there appears to be another eurythermal group ( e.g. Pseudopannota macu/osa, Pseudocloeon glaucum) that is intolerant of low pH values. As research is continuously discovering new species and new distribution records for old ones, it is likely that the above categories will need revision as more data are collected.

The studies in this thesis recognise the key role of fire as a factor which has shaped the life-histories of plants in fire-prone Mediterranean shrublands. Fire regimes are not simply products of the abiotic elements of climate and ignition sources. The biotic component makes a significant contribution because community structure and processes like litter fall determine fuel loads, and fuel distribution, and will determine properties such as fire recurrence intervals and shapes and patchiness of fires. Another key factor in the evolution of the traits of fynbos plants is plant-animal interactions involving seed and seedling predators or pathogens and herbivory. Because fires have a significant random component (for example in the timing of ignition, the position of the ignition point in the landscape and in relation to the wind movements and post- and pre-fire rainfall patterns), each fire is a unique event. These random factors are overlaid on the probability distributions of the other, more predictable factors. For example both fire recurrence intervals and the seasonal fire frequencies follow predictable patterns and therefore provide a basis for natural selection. Life-history theory links the evolutionary perspective - why organisms have evolved to be the way they are - and the ecological perspective - how traits function in the current environment. The primary selective pressures in the fynbos environment are nutrient-poor soils, winter rainfall and summer drought, recurrent fires and biotic interactions. The study can be divided into four sections: (1) patterns in reproductive maturation and mortality, (2) seed bank dynamics and pre-dispersal predation by insects, (3) seed germination and seedling mortality, and (4) an analysis of the relationship between plant life-histories and fire frequency distributions. In the first study, mortality rates of Pro tea neriifolia, P. lacticolor and Leucadendrofl xanthoconus varied from 13 to 40% from the age of 1-10 years. Mortality rates from 20-30 years of age were similar in all species and significantly higher than for younger plants, providing some support for the idea that these species undergo senescence. The removal of up to 90% of the inflorescences of Pro tea lacticolor and P. nerizJolia by baboons or rodents reduced seed banks of the proteas but not LeucadendrOll xanthoconus. Seed banks at the age of 10 years, in terms of seeds per shrub were adequate for population replacement except for P. lacticolor. The studies in the second part found that the dynamics of the seed banks of Protea neriifolia and P. repens differ markedly. The number of full seeds (with a firm white embryo) declines with age in both species. Protea repens had many full seeds per inflorescence in the youngest age class, but few full seeds in older inflorescences because of seed predation by insects. Protea neriifolia had few full seeds per infloreseence but there was a slow rate of decline in the number of seeds per inflorescence. Although the number of seeds per shrub of both species declined with increasing stand density, the number of seeds per square metre increased, more than compensating for the decline in unit output. Inflorescences of P. repens experience higher levels of seed predation by insects than those of P. neriifolia. Insect infestation levels increased rapidly with increasing age in P. neriifolia but were lower in mature plants than in the co-occurring P. repens. Low and unpredictable seed set may limit the effects of seed-eating insects on the seed yield of P. neriifolia when compared with co-occurring P. repens. The third section examined the germination of planted seeds in a 28-year old shrub land. Germination and establishment before a fire in March 1987 was similar to that after the fire but seedling mortality was higher before the fire. Seedling mortality during the first summer after the fire (October to March) was significantly correlated with planting date, in contrast to the findings of a similar study in the southern Cape. Simulations using a simple empirical model based on indexes of the daily soil moisture balance and temperature showed that a reduction of 10 or 20% in daily rainfall will have little impact on the germination of seeds released in late-summer or autumn in the western Cape, because of the long wet winter period. An increase in daily temperatures could have a more significant impact as it may reduce the length of the favourable period for germination. The final study compared the life-history traits in seeders and a sprouter. Many studies have identified distinct patterns in the demography and resource alIocation patterns of seed-regenerating and sprouting plants which are analogous to the patterns predicted for semelparous and iteroparous species by life-history theory. But there are several ways in which the demography of plants in fire¬ prone environments violates the assumptions of classical life-history theory. A new approach has been developed which explicitly accommodates these deviations and provides models which predict direct relationships between the probability distribution of fires (in time) and the reproductive maturation, mortality rates and lifespans of seeders and sprouters. A test of these models using data on fire frequencies and the demography of a seed regenerating and a sprouting species of Protea shows that they appear to apply to fynbos as well. This opens the door to the development of quantitative models that can provide a consistent theoretical framework for predicting and interpreting the relationships between fire regimes and life-history traits. It also supports arguments that regeneration exclusively from seeds and by sprouting (and from seeds), and the related suites of traits, are expressions of distinct and divergent life history strategies. Why is it important to understand life-history strategies? Life-history theory is about how organisms maximise their evolutionary fitness and thus is about organisms allocate their limited resources to survival and reproduction to maximise reproductive success. The theory also provides a link between understanding what an organism is doing and when as is typically documented in demographic studies - and why it is doing that - which gives a deeper level of insight. There have been numerous studies and reviews of life-history theory which have covered a wide variety organisms, but somehow most of these studies have been based, explicitly or implicitly, on the highly simplified r-K selection models. The studies in Chapter 6 were based on an alternative model which offers new insights into the life-histories of plants in fire prone environments. The current approach to managing fynbos (e.g. how often to burn) is based on observations of plant maturation and recruitment success which are used to determine the desired intervals between fires. Studies of fire¬ frequencies also have shown that fire intervals follow a definite distribution in time. The intervals determined by these two different approaches are about the same but there has been no direct link. The new life-history based approach makes that link explicit and direct and gives us insights into why there should be a link and what the implications are. For example, what is the likely reproductive success over a range of fire frequencies. The approach still needs further development but it definitely merits further studies.

Thesis (MSc)--University of Stellenbosch, 2001.
ENGLISH ABSTRACT: The foraging mode of the Cape grass lizard, Chamaesaura anguina, was determined by using three criteria: 1) the number of movements per minute (MPM) and the percentage of time spent moving (PTM) during periods of activity; 2) the amount of tongueflicking directed at cotton applicators labelled with prey chemicals as a measure of prey chemical discrimination; 3) the stomach contents of the lizards as an indication of the natural diet. Observations were made by means of binoculars from an observation tower using a seminatural outdoor enclosure, and through a one-way glass panel using a seminatural indoor enclosure. Each lizard was observed for aIO minute period during peak activity and the times it was moving and the times it was stationary were recorded. Data obtained in the indoor- and outdoor enclosures did not differ significantly and were pooled. "MPM(0.37 ± 0.21 SD) and PTM (1.92 % ± 0.93 SD) values recorded for C. anguina (N = 10) fall within the range given as characteristic for sit-and-wait foragers. Nine C. anguina individuals were habituated in glass terraria to accept mealworms offered to them. When all lizards accepted food without hesitation, they were tested for their ability to discriminate among three different odours presented to them in a randomized block design: prey odours consisting of mealworm surface odours, distilled water as an odourless control stimulus, and cologne as a pungency control. The number of tongue-flicks directed at the cotton applicator containing the stimulus odour during 60 s was recorded. No statistically significant differences were found among the responses to the three treatment odours (Kruskal-Wallis, H = 2.41, dj = 2, P = 0.30). An analysis of the stomach contents of21 C. anguina specimens revealed a diet of mostly diurnally active arthropod prey species. The preferred body temperatures selected by 12 grass lizards in a thermal gradient were measured six times during a 48 hour period, using a copper-constantan thermocouple inserted into the cloaca. The measured body temperatures (N = 72) ranged from 22.62 oe - 27.07 oe with a mean of24.82 oe ± 2.27 SD. The low preferred body temperature exhibited by C. anguina as compared to other cordylids may be attributed to the combined influence of vegetative cover, high altitude, and high surface-volume ratio. To determine movement patterns and microhabitat use, six lizards were observed in a seminatural outdoor enclosure (4 x 4 m). The location of the grass tufts in the enclosure was mapped, and the position of each lizard within the enclosure was noted on 17 mornings. Observations of lizard behaviour during periods of activity were made by means of binoculars from an observation tower. Although C. anguina did not show reliance on a specific shelter site, the taller, broader tufts were generally preferred as refuges during inactivity. There were significant differences between the heights (student's z-test; P < 0.001) and the diameters (Mann-Whitney; P < O.00 1) of the preferred grass tufts, and those grass tufts that were not preferred as refuges, respectively. The lizards usually sheltered in a coiled-up position in the middle of the grass tufts close to the ground. During active periods, the lizards perched in an elevated position in the vegetation by entangling their elongated bodies and tails in the grass for efficient weight distribution. Locomotion was mainly restricted to the strike action when attacking prey. Fynbos and grassland, which are the main habitat of grass lizards of the genus Chamaesaura, are fire-prone. With their serpentiform morphology, grass lizards differ markedly from other cordylids, the majority of which are rock-dwelling. One aim of this study was to determine whether grass lizards make use of refuges like burrows or crevices within their grasslrestioid habitat during periods of inactivity or when threatened by fire. Refuge selection during inactivity was determined experimentally. Twelve lizards were offered different refuge options, namely grass tufts, crevices, burrows and loose sand. All twelve lizards preferred to shelter in the grass tufts. When the grass tufts were removed, only two lizards made use of the burrows and crevices provided, the other 10 not sheltering at all. Refuge selection when threatened by fire was tested by placing the 12 lizards in an enclosure provided with grass tufts and two types of refuges, burrows and crevices. The grass was set alight at one end of the enclosure and the fire was fanned on towards the other end with the aid of a high-speed fan. Precautions were taken to ensure the safety of all the lizards and to intervene when they were in direct danger. Only two of the 12 lizards sought shelter in the refuges provided. Of the remaining 10, six fled and four were trapped by the flames, requiring intervention. The results of these experiments, as well as field observations, suggest that C. anguina seldom makes use of shelter options other than grass and restio tufts, even when threatened by fire. In the case of fire, it flees by 'grass-swimming'. Field observations also suggest that mortality during and after a fire is considerably higher than in the case of rock-dwelling cordylids. The reproductive status of adult females (N = 85) were determined on the basis of the developmental stage of ovarian follicles and the presence or absence of oviductal eggs. Females were grouped into four reproductive categories: pre-vitellogenic, early vitellogenic, pre-ovulatory and gravid. To determine the reproductive cycle exhibited by the males (N = 46), testicular volume and seminiferous tube diameter were measured, as well as the spermatogenic activity assessed qualitatively. Spermatogenic activity was assessed by using Licht's (1967) classification system. The snout-vent length (SVL) of 144 specimens was measured. Sexual size dimorphism (SSD) recorded for C. anguina was quantified by a size dimorphism index (SDI). Reproductive activity was asynchronous among females, differing from the normal cordylid cycle of autumn/winter vitello genic activity, followed by winter/spring ovulation and gestation in late summer to autumn. The significant seasonal variation that existed in testes volume (ANOVA; F (7,22) = 3.70; P < 0.05) and seminiferous tubule diameter (ANOVA; F (10,25) = 4.90; P < 0.05), as well as sermatogenic activity as observed by histological examination, indicated that C. anguina males follow an annual spermatogenic cycle that can be described as post-nuptial. The cycle is characterized by summer/autumn spermiogenesis, associated with sperm storage throughout winter. Chamaesaura anguina males differ from other cordylids following a post-nuptial cycle, by starting with spermatogenesis in spring. The mean SVL of female grass lizards (109.51 mm ± 20.60 SD) was significantly larger (Mann-Whitney; P < 0.001) than that of males (84.77 mm ± 9.39 SD). A positive SDI of 1.29 and a SDImax of lAO were determined. Female-biased dimorphism in SVL recorded for C. anguina corresponds with the general pattern recorded for terrestrial cordylids, but contrasts with male-biased dimorphism in rupicolous forms. The longer SVL of C. anguina females facilitates higher fecundity. This, in turn, might be an adaptive survival strategy for this lizard species in the fire-prone environment where it occurs, because successful recruitment is facilitated by high fecundity. KEYWORDS: Chamaesaura anguina; serpentiform body; cryptic colouration; grass/restio habitats; undulatory locomotion; foraging mode; preferred body temperature; movement patterns; microhabitat use; fire susceptibility; refuge selection; reproductive cycle; sexual size dimorphism. 4
AFRIKAANSE OPSOMMING: Die voedingswyse van Chamaesaura anguina is bepaal deur drie kriteria: 1) die getal bewegings per minuut (BPM) en die persentasie tyd wat aan beweging bestee word (PTB) tydens aktiewe periodes; 2) die hoeveelheid tongskiete wat gerig word na wattepluisies bedek met prooi chemikalieë as 'n maatstaf van prooi chemiese diskriminasie; 3) die maaginhoud van die akkedisse as 'n indikasie van hul natuurlike diëet. Waarnemings is met 'n verkyker vanaf 'n waarnemingstoring langs 'n buitemuurse kampie gemaak, terwyl dit deur 'n eenrigting glaspaneel in die geval van 'n binnemuurse opstelling gemaak is. Elke akkedis is vir 'n periode van 10 minute tydens piek-aktiwiteit dopgehou, en die tye wat dit beweeg het en nie beweeg het nie, is aangeteken. Data verkry in die binnemuurse - en buitemuurse opstellings het nie statisties van mekaar verskil nie en is saamgevoeg. BPM (0.37 ± 0.21 SD) en PTB (1.92 % ± 0.93 SD) waardes aangeteken vir C. anguina (N = 10) val binne die reeks waardes wat as kenmerkend vir sit-en-wag voeders beskou word. Nege C. anguina individue is in glas terraria gewoond gemaak om meelwurms te aanvaar wat hul aangebied is. Toe al die akkedisse die kos sonder huiwering aanvaar het, is hul vermoë getoets om tussen drie verskillende geure wat hul aangebied is in 'n ewekansige blokontwerp, te diskrimineer: prooigeur bestaande uit die reuk van meelwurms, gedistilleerde water as 'n geurlose kontrole stimulus, en reukwater as 'n skerp kontrole. Die hoeveelheid tongskiete gerig na die gegeurde wattepluisie gedurende 'n 60 s periode, is aangeteken. Geen statisties-beduidende verskille is gevind tussen die reaksies tot die drie geure nie (Kruskal-Wallis, H = 2.41, df= 2, P = 0.30). 'n Analise van die maaginhoude van 21 C. anguina individue het meestal dag-aktiewe arthropoda prooispesies onthul. Die voorkeur liggaamstemperature wat deur 12 akkedisse in 'n termiese gradiënt geselekteer is, is ses maal gemeet gedurende 'n 48 uur periode, deur van 'n termo-koppel wat in die kloaka geplaas is, gebruik te maak. Die bepaalde liggaamstemperature (N = 72) het gevariëer van 22.62 oe - 27.07 oe met 'n gemiddeld van 24.82 oe ± 2.27 SA. Die lae voorkeur liggaamstemperatuur van C. anguina mag dalk toegeskryf word aan die gekombineerde invloed van plantbedekkingskadu, hoë hoogte bo seevlak, en hoë oppervlakte-volume verhouding. Die bewegingspatrone en mikrohabitat-gebruik van C. anguina is bestudeer deur ses akkedisse in 'n buitemuurse kampie aan te hou. Die ligging van die graspolle binne die kampie is op 'n kaart aangeteken, en die posisie van elke akkedis binne in die kampie is op 17 oggende aangeteken. Verdere waarnemings is gemaak met 'n verkyker vanaf 'n waarnemingstoring terwyl die akkedisse aktief was. Alhoewel die C. anguina individue nie herhaaldelik 'n spesifieke skuilplek gebruik het nie, het hul die langer, breër graspolle as skuilplek gedurende onaktiwiteit verkies. Daar was 'n hoogs beduidende verskil tussen onderskeidelik die hoogtes (studente z-toets; P < 0.001) en die deursnitte (studente I-toets; P < 0.001) van die verkose graspolle, en die graspolle wat nie gekies is as skuilplekke nie. Hulle het gewoonlik in 'n opgerolde wyse, in die middel en na aan die bodem van die graspolle, geskuil. Daar is gevind dat C. anguina vanaf 'n verhewe posisie voed deur sy verlengde liggaam en stert in die grass te vervleg om doeltreffende gewigsverspreiding te verseker. Beweging was hoofsaaklik tot die vangaksie van prooi beperk. Vuur is 'n algemene verskynsel in fynbos en graslande, wat die hoof habitat van grasakkedisse van die genus Chamaesaura uitmaak. Met hulle slangagtige morfologie, verskil grasakkedisse drasties van ander lede van die Cordylidae, waarvan meeste rotsbewonend is. Die doelwit van hierdie studie was om te bepaal of die grasakkedisse gebruik sal maak van skuilplekke, soos gate en klipskeure binne die grashabitat, gedurende periodes van onaktiwiteit of wanneer bedreig word deur vuur. Twaalf akkedisse is verskillende skuilopsies aangebied, naamlik graspolle, klipskeure, gate en los sand. Al twaalf het verkies om in die graspolle te skuil. Toe die graspolle verwyder is, het slegs twee akkdisse die klipskeure en die gate benut, terwyl die ander 10 nie geskuil het nie. Skuilplek-seleksie wanneer bedreig word deur vuur, is getoets deur 12 akkedisse in In afskorting te plaas wat met graspolle en twee tipes skuilplekke, gate en klipskeure, voorsien is. Die gras aan die een kant van die afskorting is aan die brand gesteek en is aangehelp m.b.v. 'n hoë-spoed waaier. Voorsorgmaatreëls om die veiligheid van al die akkedisse te verseker en om in te gryp as hulle in direkte gevaar sou verkeer, is getref. In twee van die 12 gevalle het die akkedisse skuiling gesoek in die beskikbare skuilings. In die oorblywende 10 gevalle het ses akkedisse gevlug, terwyl vier deur die vlamme vasgevang was en daar ingegryp moes word. Die resultate van hierdie eksperimente, sowel as waarnemings wat in die veld gemaak is, dui daarop dat C. anguina selde van skuilopsies, anders as graspolle en restio's, gebruik maak as hulle deur vuur bedreig word. In die geval van vuur, vlug hulle deur te "swem" deur die gras. Veldwaarnemings dui ook daarop dat mortaliteit gedurende en na die vuur heelwat hoër is as in die geval van rotsbewonende gordelakkedisse. Die reproduktiewe status van volwasse wyfies (N = 85) is bepaal deur die ontwikkelingsfase van ovarium follikels te ondersoek en deur die teenwoordigheid of afwesigheid van eiers in die oviduk. Wyfies is in vier reproduktiewe kategorieë gegroepeer: pre-vitellogenies, vroeg vitellogenies, pre-ovulatories en dragtig. Testikulêre volume en saadbuisdeursnit is gemeet, en spermatogeniese aktiwiteite soos histologies vasgestel, is gebruik om die reproduktiewe siklus van die mannetjies (N = 46) te bepaal. Spermatogeniese aktiwiteit is bepaal deur van Licht (1976) se klassifikasie sisteem gebruik te maak. Die snoet-kloaak lengte (SKL) van 144 individue is gemeet en die seksuele grootte-dimorfisme (SGD) soos bepaal vir C. anguina, is gekwantifiseer deur middel van In grootte-dimorfisme-indeks (GDI). Voortplantingsaktiwiteit in die wyfies was nie gesinchroniseerd nie, en verskil dus van die normale gordelakkedissiklus met herfs/winter vitellogeniese aktiwiteit, winter/lente ovulasie en swangerskap in die volgende laat somer tot herfs. Die beduidende seisoenale verskil wat bestaan het in die testesvolume (ANOV A; F (7.22) = 3.70; P < 0.05) en die saadbuisdeursnit (ANOVA; F (10,25) = 4.90; P < 0.05), asook testis histologie, het aangedui dat C. anguina mannetjies 'n jaarlikse spermatogeniese siklus volg, beskryf as "post-nuptial". Hierdie siklus word gekenmerk deur somer/herfs spermiogenese, geassosieer met spermstoring gedurende die winter. In teenstelling met ander gordelakkedisse wat hierdie siklus volg, begin spermatogenese in C. anguina alreeds in die lente. Die gemiddelde SVL van die wyfies (109.51 mm ± 20.60 SA) was beduidend groter (Mann-Whitney; P < 0.001) as dié van die mannetjies (84.77 mm ± 9.39 SA). In Positiewe GDI van 1.29 en In GDImax van 1.40 is gemeet. Wyfie-plus dimorfisme in SKL bepaal vir C. anguina, stem ooreen met die algemene patroon waargeneem by terrestriële gordelakkedisse, maar is in kontras met mannetjie-plus dimorfisme by rotsbewonende vorme. Die langer SKL by wyfies van C. anguina kan In hoër fekunditeit fasiliteer. Dit mag dalk In oorlewingstrategie vir die species wees wat in In vuurgeteisterde omgewing voorkom, omdat suksesvolle rekolonisering deur In hoë fekunditeit aangehelp word. TREFWOORDE: Chamaesaura anguina, slangagtige liggaam; kriptiese kleuring; graslrestio habitatte; kronkel beweging; voedingsrnetode; voorkeurtemperatuur; bewegingspatrone; mikrohabitat-gebruik; vatbaarheid vir vuur; skuilplekseleksie; voortplantingsiklus; seksuele dimorfisme.

Thesis (MScAgric)--University of Stellenbosch, 2004.
ENGLISH ABSTRACT: Botrytis cinerea Pers.: Fr., a pathogen of grapevine (Vitis vinifera L.), moves mainly through conidia by air currents in vineyards which are deposited intermittently on the surfaces of leaves, inflorescences and bunches. Little is known about the relationship between the inoculum dosage in air and incidence of Botrytis bunch rot, and how the relationship is influenced by environmental and host factors. To better understand this relationship, information is needed on the period over which conidia have accumulated, the time they are able to survive and remain infectious, time of symptom expression in relation to conidium arrival at the infection court and host surface wetness. The aims of this study were (i) to estimate the amount of viable B. cinerea occurring in air in vineyards, and at different positions on leaves, inflorescences and bunches of grape at different phenological stages, (ii) to determine the relationships between the number of B. cinerea colonies recorded on spore traps placed in the bunch zone of vines and the incidence of B. cinerea recorded from the different tissues, and (iii) to compare the efficacy of fenhexamid on leaves and inflorescences carrying natural B. cinerea inoculum with those inoculated with dry, airborne conidia. Different techniques were used to detect viable Botrytis cinerea in air currents and on plant material obtained from table (cultivars Dauphine and Waltham Cross in Paarl- and Worcester-district) and wine grape (cultivars Chardonnay, Sauvignon Blanc and Merlot in Stellenbosch- and Malmesbury district) vineyards in the Western Cape province during 2001-02 and 2002-03. For four consecutive days during prebloorn, bloom, pea-size, bunch closure, veraison and harvest, sets of Petri dishes with freshly prepared Kerssies' B. cinerea selective medium (spore traps) were left overnight in the bunch zone of vines. Plant material was collected from the vines on the fourth day. Leaves, infloresence and bunches were treated with paraquat to terminate host resistance and to promote the development of the pathogen on the tissues. The B. cinerea inoculum dosage in air, and the incidence at which the pathogen was detected at various positions on leaves and in bunches normally differed between vineyards. However, the various tests revealed that the pathogen generally occurred in a consistent pattern in air in the bunch zone of vines, on leaves and in bunches from all vineyards. The inoculum dosage in air in the bunch zone of the vine was generally highest during prebioom or during bloom, it decreased at pea size and mostly remained at a very low level at the later growth stages. The estimations of viable B. cinerea residing naturally on leaves and in bunches, showed that their amounts depicted levels occurring in air in the bunch zone of the vine. Necrotic leaves occurring early season in vineyards were identified as an important source of secondary inoculum for dispersal to the developing bunches. Latent infections at the various positions in bunches were few at véraison and harvest. However, due to the necrotrophic ability of the pathogen, extensive berry rot (due to berry-to-berry contact) and thus severe bunch rot developed from a single berry that become symptomatic at the base of the pedicel/berry attachment zone. The B. cinerea occupation pattern explains why Botrytis bunch rot develops mostly from the inner bunch and why disease management strategies should concentrate on the bloom to pre-bunch closure stage and on inhibiting B. cinerea development in the inner bunch during the early part of the season. Thus, to effectively reduce B. cinerea in grapevine, preventative applications are recommended to reduce two primary infection events: (a) between budding and pre-bloom to counteract primary leaf infection; (b) during late bloom or early pea size stage, to reduce the amount of the pathogen on leaves and infloresences and to prevent colonisation of floral debris. A third spray can be applied at bunch closure to reduce the amount of B. cinerea at various positions of the inner bunch, especially for cultivars with tight bunches. The efficacy of fenhexamid on leaves and inflorescences carrying natural B. cinerea inoculum was compared with those inoculated with dry, airborne conidia. Shoots were obtained during late bloom from a vineyard (wine grape cultivar Merlot) in the Stellenbosch region. The shoots were divided into two main groups. One group of shoots was left uninoculated, the other shoots were inoculated by dusting with dry B. cinerea conidia in a settling tower. Before inoculation, equal numbers of shoots in each main group was sprayed with fenhexamid, or left unsprayed. Following inoculation and incubation, shoots of each treatment were divided in two equal groups. The one lot of shoots were rinsed in water. The other lot of shoots were immersed in paraquat solution to terminate host resistance and to promote the development of the pathogen from the tissues. For both uninoculated and inoculated shoots, irrespective of fungicide treatment, leaves remained asymptomatic at both the blade and petiole position for the water rinse treatment. No symptom of B. cinerea decay developed at any of the positions on leaves from shoots sprayed with fenhexamid. Spraying of shoots with fenhexamid completely suppressed B. cinerea infection and symptom expression on both uninoculated and inoculated inflorescens. For inoculated shoots, B. cinerea developed from approximately 50% of the laterals in the water rinse treatment. However, inflorescences rinsed in water remained asymptomatic. The laboratory studies showed that fungicides, if applied properly to shoots and bunches under controlled conditions, effectively reduced the amount of B. cinerea at the various positions on leaves and inflorescence, and prevented infection and symptom expression at bloom. However, these goals are not achieved in vineyards where the fungicides are applied by conventional spraying methods. Therefore, more work is needed to evaluate fungicide application techniques by conventional spraying methods for proper fungicide coverage, and the reduction of B. cinerea in bunches.
AFRIKAANSE OPSOMMING: Botrytis cinerea Pers.: Fr., 'n patogeen van druiwe (Vilis vinifera L.), beweeg hoofsaaklik deur middel van konidia in lugstrome deur die wingerd, en word dan afwisselend op die oppervlakte van die blare, bloeiwyses en trosse gedeponeer. Daar is nog min bekend oor die verhouding tussen die hoeveelheid inokulum in die lug en die voorkoms van Botrytis op die trosse, en hoe die verhouding deur omgewings- en gasheerfaktore beïnvloed word. Ten einde hierdie interaksie beter te verstaan, word inligting benodig oor die tydperk waarin die konidia akkumuleer, die tyd wat hulle oorleef en virulent bly, en die tyd van simptoom-uitdrukking in verhouding tot die verspreiding van die konidia by die infeksie-setel en benatbaarheid van die gasheer-oppervlakte. Die doel van hierdie studie was (i) om die hoeveelheid lewensvatbare B. cinerea wat in die lug voorkom, asook by verskeie posisies op blare, bloeiwyses en trosse by verskillende fenologiese stadiums te kwantifiseer, (ii) om die verhouding tussen die aantal aangetekende B. cinerea kolonies op spoorvangers wat in die trossone van die wingerd geplaas is, en die voorkoms van B. cinerea, aangeteken van verskeie weefsels, te bepaal, en (iii) om die effektiwiteit van fenhexamid op blare en bloeiwyses wat natuurlike B. cinerea inokulum dra, te vergelyk met dié wat met droë, luggedraagde konidia geïnokuleer is. Verskillende tegnieke is gebruik om lewensvatbare Botrytis cinerea in lugstrome en op plantmateriaal van tafeldruiwe (kultivars Dauphine en Waltham Cross In Paarl- en Worcester-distrik) en wyndruiwe (kultivar Chardonnay, Sauvignon Blanc en Merlot in Stellenbosch- en Malmesbury distrik) in wingerde van die Wes-Kaap provinsie gedurende 2001-02 en 2002-03 te kwantifiseer. Petri bakkies met vars voorbereide Kerssies medium, selektief vir B. cinerea (spoorvangers), is vir vier agtereenvolgende dae gedurende vóórblom, blom, ertjiekorrel, trostoemaak, kleurbreek en oes, oornag in die trossone van wingerdstokke in betrokke wingerde, gelaat. Plantmateriaal is op die vierde dag versamel. Blare, bloeiwyses en trosse is met paraquat behandel ten einde die gasheerweerstand af te breek en ontwikkeling van die patogeen op die weefsel te bevorder. B. cinerea inokulum in die lug, en die frekwensie waarby die patogeen op verskeie posisies op blare en in die trosse voorgekom het, het normaalweg tussen wingerde verskil. Die verskeie toetse het getoon dat die patogeen normaalweg in 'n vaste patroon in die lug en die trossones van wingerde, asook op blare en in trosse van alle wingerde voorkom. Die inokulumkonsentrasie in die lug in die trossones van wingerdstokke was normaalweg die hoogste gedurende vóórblom of gedurende blom. Die inokulumdruk het by ertjiekorrel verminder en meestal by 'n 'n baie lae vlak tydens die latere groeistadia gebly. Die bepaling van lewensvatbare B. cinerea wat natuurlik op blare en in trosse gedeponeer is, het getoon dat hul hoeveelhede ooreenstem met vlakke wat in die lug in die trossone van die wingerd voorkom. Nekrotiese blare vroeg in die seisoen is 'n belangrike bron van sekondêre inokulum en speel dus 'n belangrike rol by die verspreiding van Botrytis tussen die ontwikkelende trosse. Latente infeksies by die verskeie posisies in trosse was laag by kleurbreek en oes. Weens die saprofitiese vermoëns van die patogeen, kan uitgebreide korrelvrot (a.g.v. korrel-tot-korrel kontak) en dus ernstige trosvrot, ontwikkel. 'n Enkele korrel kan by die basis van die pedisel/korrel vashegtingsone simptomaties raak, en vandaar na aangrensende korrels versprei. Die B. cinerea kolonisasiepatroon verduidelik waarom Botrytis trosvrot meestal vanaf die binneste tros ontwikkel en waarom siektebeheerstrategieë op die vóórblom- tot blomstadium gekonsentreer moet word, en op die inhibering van B. cinerea ontwikkeling in die binneste tros gedurende die vroeë stadia van die seisoen. Dus, om B. cinerea effektief tydens die twee primêre infeksie stadiums in wingerde te verminder, kan voorkomende toedienings aanbeveel word: (a) tussen knopvorming en vóórblom om primêre blaarinfeksie te verhoed; (b) gedurende láátblom en vroeë ertjiekorrel om die hoeveelheid inokulum op die blare en bloeiwyses te verminder, en die kolonisasie van blomdebris te voorkom. 'n Derde toediening kan tydens trostoemaak aangewend word om B. cinerea by verskeie posisies in die binneste tros te verminder, veral by kultivars met digte trosse. Die effektiwitiet van fenhexamid op blare en bloeiwyses waarop natuurlike B. cinerea inokulum voorkom is vergelyk met dié wat met droë, luggedraagde konidia geïnokuleer is. Lote is vanaf 'n wingerd (wyndruif kultivar Merlot) in die Stellenbosch distrik tydens láátblom verkry en in twee hoofgroepe verdeel. Die een groep lote is geïnokuleer deur droë B. cinerea konidia in 'n afsettingstoring te strooi, terwyl die ander groep nie geïnokuleer is nie. Vóór inokulasie, is die helfte van die lote in elke groep met fenhexamid behandel, terwyl die ander helfte onbehandeld gelaat is. Ná inokulasie en inkubasie, is lote van elke behandeling verder in twee eweredige groepe verdeel. Die een groep lote is in water gespoel, terwyl die ander groep lote in 'n paraquatoplossing gedompel is om die gasheerweerstand te verwyder, en die ontwikkeling van die patogeen vanuit die weefsels te bevorder. Vir die waterspoelbehandeling van beide ongeïnokuleerde en geïnokuleerde lote, ongeag van die fungisiedbehandeling, het die blare asimptomaties by beide die bladoppervlakte en blaarsteelposisie gebly. Geen simptome van B. cinerea verrotting het by emge van die blaarposisies van die lote, met fenhexamid gespuit, ontwikkel nie. Die spuit van die lote met fenhexamid het die B. cinerea infeksie en die simptoomontwikkeling op beide die ongeïnokuleerde en geïnokuleerde bloeiwyses heeltemalonderdruk. By die geïnokuleerde lote, het B. cinerea vanaf ongeveer 50% van die laterale in die waterspoelbehandeling ontwikkel, alhoewel, bloeiwyses wat in water afgespoel is, heeltemal asimptomaties gebly het. Laboratoriumstudies het getoon dat fungisiedes, indien korrek toegedien op lote en trosse onder gekontroleerde toestande, tot effektiewe vermindering van B. cinerea getalle by die verskillende posisies op blare en bloeiwyses lei, en infeksie en simptoomuitdrukking tydens blom voorkom. Weens die feit dat die doelwitte nie behaal kan word in wingerde waar die fungisiede deur konvensionele spuitmetodes toegedien is nie, moet meer studies gedoen word om fungisied toedieningstegnieke, by konvensionele spuitmetodes, VIr deeglike fungisiedbedekking en die vermindering van B. cinerea in trosse, te evalueer.

Thesis (MSc)--University of Stellenbosch, 2002.
ENGLISH ABSTRACT: In this study, the Fish Assemblage Integrity Index (FAll) was applied on three rivers within the southwestern Cape. This index uses fish as indicators of biological aquatic integrity and is based on indigenous species expected to be present in biological fish habitats. Fish integrity classes were calculated for each of the sites in the three rivers studied. Sites 2 and 4 within the Lourens River were rated as Class C, whereas sites 1 and 3 were rated as Class F and Class D respectively. Sites 1, 2 and 4 within the Palmiet River were rated Class F, whereas sites 3 and 5 were rated as Class E and Class D respectively. Site 1 within the Hout Bay River was rated as a Class F site, in addition to sites 2 and 3 been rated as Class A. It is however, suggested that the FAll needs to be adjusted to accommodate the general low species richness experienced in the southwestern Cape. In addition to the FAll been applied, the effects of long-term exposure to subtle water quality changes associated with human activities, specifically potential estrogenic compounds in fish from the Lourens River were also investigated. The production of the yolk precursor lipoprotein complex, vitellogenin (Vtg) produced in the liver under estrogen control was employed as biomarker for environmental estrogen exposure. Male fish from the Lourens River were studied using SDS-PAGE gel electrophoresis. Results indicated that 60% of male fish showed the presence of Vtg in their plasma. Abnormal gonad morphology in male and female fish were also assessed using standard histological procedures. Results from this study indicated no observed abnormalities in either male or female gonads. The immediate presence of endocrine disrupters with estrogen activity was investigated by screening water samples from the Lourens, Palmiet and Hout Bay Rivers for estrogen activity. Results indicated that none of the samples appeared to be cytotoxic. In addition, estrogen activity of water samples was also investigated by in vitro culturing of water samples with frog, Xenopus laevis, liver slices. Results indicated that none of the water samples from the three rivers studied indicated estrogenic activity. Although cytotoxicity and estrogen activity results were negative, the production of Vtg in male fish suggests further research regarding the presence of estrogenic substances in these rivers.
AFRIKAANSE OPSOMMING: In die huidige studie is die 'Fish Assemblage Integrity Index' (FAIl) toegepas op drie rivere in die suidwes Kaap. Hierdie indeks gebruik visse as bioindikatore van biologies akwatiese integriteit en is gebasseer op die inheemse visspesies wat verwag word in biologiese vishabitatte. Integriteitsklasse is bepaal vir elke studieterrein in die drie rivere wat ondersoek is. 'n Klas C is bepaal vir studieterreine 2 en 4 in die Lourensrivier. Klas F en Klas D is bepaal vir studieterreine 1 en 3 in die rivier onderskeidelik. 'n Klas F is bepaal vir studieterreine 1, 2 en 4 en Klas E en Klas D bepaal vir studieterreine 3 en 5 in die Palmietrivier onderskeidelik. 'n Klas F is bepaal vir studieterrein 1 in die Houtbaairivier waar 'n Klas A bepaal is vir studieterreine 2 en 3. Dit word egter voorgestel dat die FAII aangepas moet word om die algemene lae spesierykheid wat ervaar word in die suidwes Kaap te akkomodeer. Die reaksie van visse, afkomstig van die Lourensrivier, op die langtermyn blootstelling aan estrogeniese stowwe is ook bestudeer. Spesifieke reaksies van endokriene versteuring, soos vitellogeen (Vtg) produksie in manlike visse is ondersoek deur middel van SDS-PAGE gel elektroforese. Resultate toon dat in 60% van die manlike visse Vtg in die plasma teenwoordig was. 'n Ondersoek na abnormale gonade morfologie in manlike en vroulike visse van die Lourensrivier is deur standard histologiese prosedures gedoen. Resultate hiervan dui op geen sigbare abnormaliteite in die gonades nie. Die onmiddelike teenwoordigheid van endokriene versteurders is bestudeer deur die sitotoksisiteit van watermonsters afkomstig van die Lourens, Palmiet en Houtbaai riviere te bepaal. Resultate dui aan dat geen monsters sitotoksies was nie. Die estrogeenaktiwiteit van die watermonsters is ook ondersoek deur van in vitro kulture van watermonsters saam met padda, Xenopus leavis, lewersnitte gebruik te maak. Geen estrogeniese aktiwiteit is in die watermonsters gevind nie. Al is die sitotoksisiteit en estrogeenaktiwiteit resultate negatief, dui die produksie van Vtg in manlike visse op die noodsaaklikheid van verdere navorsing ten opsigte van die teenwoordigheid van estrogeniese stowwe in drie riviere.

Thesis (MSc)--University of Stellenbosch, 2011.
ENGLISH ABSTRACT: The commercial cultivation of Proteaceae is an important industry in the Western Cape, however, farmers are challenged with arthropod infestation which compels them to solely rely on chemical pesticides. Past studies in South Africa have shown that Proteaceae comprise a rich and diverse arthropod fauna. However, as most of these studies were conducted on wild Proteaceae, they may not be representative of cultivated proteas. Moreover, most of these species remained unidentified due to lack of identification expertise. These past studies, however, form a useful baseline for arthropod studies in proteas, e.g. the feeding guilds found in proteas. The aim of this research was to conduct an intensive and extensive survey of the arthropod-fauna associated with commercially-cultivated proteas across an entire year. Specifically, this survey was designed to document the composition of the arthropod fauna (creating a comprehensive reference collection for pest management purposes) and to assess whether the arthropod fauna differed between seasons and pesticide treatments. Infructescences, inflorescences and foliage of mainly commercial Proteaceae were sampled for arthropods seasonally for a period of twelve months by collection of plant material and direct searching. Seven commercial protea blocks, and a wild protea block (remnant patch of fynbos vegetation), were used as the sampling sites, and two sprayed blocks were used for assessing pesticide efficacy. Individual arthropods were identified as far as possible, with 37% identified to species level. A species accumulation curve showed that rare (minor) arthropod species made up of 70% of arthropods occurring in cultivated proteas. More than 8 700 individuals from more than 140 species and about 80 families were collected and identified, revealing that cultivated proteas have a rich and diverse insect fauna. These arthropods represent the full range of plant-feeding guilds: leaf miners, leaf chewers, flower bud borers, sap suckers and seed feeders. Flower visitors/free living guild was the most abundant (72%) and speciose (25%). In addition to phytophages, there was a large suite of insect predators and parasitoids. A large number of the arthropods were endemic to the Cape Floristic Region (CFR) and some (7.86%) have a pest status, in that they cause significant damage to the protea plants (for example, 60% of Safari sunset cultivar (Leucadendron salignum x L. laureolum) new flush stems and leaves were affected by Epichoristodes acerbella (Tortricidae). Capys alphaeus (Lycaenidae) and Phyllocnistis sp. (Phyllocnistidae) appear to be specialist pests, as they attack mainly Protea cynaroides and Susara cultivar (Protea magnifica x P. susannae) respectively. Arthropod abundance did not differ significantly between seasons, although significant seasonal effects were observed in species richness when the protea cultivars were examined separately. Pesticide application did not affect arthropod abundance, but did decrease species richness in sprayed blocks. Pesticides appeared to negatively affect minor (rare) species disproportionately, probably due to their lack of prior exposure to pesticides and hence sensitivity. Due to this inefficacy of pesticides in cultivated proteas, an increasing emphasis on the importance of non-chemical control measures, and our improved knowledge of the predatory and parasitic species in this system, integrated pest management strategies deserve greater research attention. Monitoring and use of threshold values for arthropod pests were suggested here, as well as the use of biological, cultural, physical and chemical (optimal use) control. For instance, in cultural control, polycropping and intercropping in proteas to increase plant diversity in the monocultures to promote a higher density of predators and parasitoids can be used. Certain flowering plants are known to provide greater temporal and spatial distribution of nectar and pollen sources, which can increase parasitoid reproductive potential and abundance of alternative hosts/prey when the pest species are scarce or at an inappropriate stage.
AFRIKAANSE OPSOMMING: Die kommersiële verbouing van Proteaceae (proteas) is 'n belangrike bedryf in die Wes-Kaap. Menige plantasie wemel egter van artropodes, wat boere noop om slegs van chemiese plaagdoders gebruik te maak. Vorige studies in Suid-Afrika toon dat proteas die gasheerplant vir 'n ryke en diverse artropodefauna is. Aangesien die meeste van hierdie studies egter op wilde proteas uitgevoer is, weerspieël dit moontlik nie die stand van sake met verboude proteas nie. Weens 'n gebrek aan kundigheid om die artropodes te eien word baie van die spesies boonop nooit uitgeken nie. Dié studies voorsien egter 'n nuttige grondlyn vir 'n ondersoek na die artropodes op proteas, veral vir die bestudering van die gilde wat van die protea leef (“the feeding guild”). Hierdie navorsing het ten doel om 'n intensiewe en omvattende opname te maak van die artropodefauna wat oor die tydperk van 'n jaar op kommersieel verboude proteas voorkom. Die opname is meer bepaald ontwerp om die samestelling van die artropodefauna te bestudeer (deur 'n omvattende verwysingsversameling vir plaagbestuurdoeleindes te skep), en om vas te stel of seisoene en plaagbehandelings enige beduidende uitwerking op die artropodefauna het. Oor 'n tydperk van 12 maande is seisoenale monsters van die vrug- en bloeistadia, saadkoppe en blare van hoofsaaklik kommersiële proteas gesoek en ingesamel. Sewe kommersiële proteablokke sowel as 'n blok wilde proteas het as proefpersele gedien, en twee bespuite blokke is gebruik om die doeltreffendheid van plaagdoder te beoordeel. Individuele artropodes is so noukeurig moontlik uitgeken – 37% tot op spesievlak. Volgens 'n spesieakkumulasiekurwe maak seldsame (kleiner) artropodespesies sowat 70% van die artropodes uit wat op verboude proteas voorkom. Die meer as 8 700 individue van meer as 140 spesies en sowat 80 families wat ingesamel en uitgeken is, toon die rykheid en diversiteit van die artropodefauna op verboude proteas. Hierdie artropodes verteenwoordig die volle reeks plantvreterspesies – van blaardelwers en blaarkouers tot blomknopboorders, sapsuiers en saadvreters. Blombesoeker-/vrylewende spesies was die volopste (72%) en mees divers (25%). Buiten plantvreters was daar ook 'n groot aantal roofinsekte en parasitoïede. Baie van die artropodes was inheems, en sommige (7,86%) het boonop plaagstatus, aangesien hulle beduidende skade aan die proteaplant aanrig. [By ongeveer 60% van die Safari Sunset-kultivar (Leucadendron salignum x L. laureolum) is nuwe stamme en blare byvoorbeeld deur die Epichoristodes acerbella (Tortricidae) aangetas.] Capys alphaeus (Lycaenidae) en Phyllocnistis sp. (Phyllocnistidae) blyk spesialisplae te wees wat onderskeidelik hoofsaaklik die Protea cynaroides en die Susarakultivar (Protea magnifica x P. susannae) in die visier het. Artropodegetalle het nie juis tussen seisoene gewissel nie, hoewel 'n afsonderlike ondersoek van die proteakultivars 'n beduidende seisoenale uitwerking op spesierykheid aan die lig gebring het. Eweneens het die toediening van plaagdoder nie die artropodegetalle verminder nie, maar wel spesierykheid op die bespuite blokke verswak. Plaagdoders blyk besonder negatiewe uitwerking op kleiner (seldsame) spesies te hê – waarskynlik omdat dié spesies nie voorheen aan plaagdoders blootgestel was nie, en dus gevoelig is daarvoor. Weens die oënskynlike ondoeltreffendheid van plaagdoders op verboude proteas, verg 'n toenemende klem op die belang van niechemiese beheermaatreëls, 'n behoefte aan meer kennis van die roof- en parasitiese spesies in die stelsel, en die vraag na geïntegreerde plaagbeheerstrategieë, meer navorsing. Die studie moniteer en gebruik drempelwaardes vir artropodeplae, sowel as biologiese, kulturele, fisiese én chemiese (‘optimalegebruik’-) plaagbeheer. Met kulturele beheer kan poli- en interverbouing van proteas byvoorbeeld gebruik word om plantdiversiteit in die monokulture te verbeter, ten einde só 'n hoër digtheid van roofspesies en parasitoïede in die hand te werk. Sekere blomplante bied kenmerkend 'n wyer tyd- en ruimtelike verspreiding van nektar- en stuifmeelbronne, wat parasitoïede se voortplantingsvermoë en die getalle van alternatiewe gashere/prooi kan verbeter wanneer die plaagspesies skaars is of in 'n ontoepaslike stadium verkeer.

Thesis (MScConEcol)--University of Stellenbosch, 2011.
ENGLISH ABSTRACT: The role of mites as primary vectors of various fungi within Protea infructescences was recently confirmed and raised questions about their general diversity and their role within this unique niche. Although mites evidently form an integral part of Fynbos ecosystems and probably play a significant role in Protea population dynamics, there is a general void in our knowledge of mite diversity within the Cape Floristic Region. These organisms do not only affect ecological processes within the CFR, but also the economic value of Protea exports. This study sets out to describe mite communities within the infructescences of a variety Protea species. In the process, the role of various environmental variables and differences in host characteristics affecting these communities are also explored. A total of 24281 mite individuals, comprising of 36 morphospecies in 23 families, were collected from 16 surveyed Protea spp. Mite community structure and composition were significantly influenced by plant taxonomy, phenology and infructescence architecture in different Protea spp. At a temporal scale, infructescence age and season were influential factors on mite community structure. Collection locality significantly influenced mite communities within the infructescences of a single Protea sp. Host architecture had no influence on mite communities within a single host species. Geographic distance had no significant influence on mite community structure within Protea infructescences. This implies that factors particular to particular host species determine mite communities. These include factors such as the mode of pollination of the host plant, level of serotiny and plant life form. Numerous newly recorded mite species collected from Protea infructescences are also described in this study. An identification key to the Tydeidoidae of South Africa is provided here for the first time. This study forms a baseline dataset for future studies on the biodiversity of mites in this extremely diverse eco-region.
AFRIKAANSE OPSOMMING: Die rol van myte as primêre vektore van verskeie funguses binne Protea vrugtekoppe is onlangs bevestig, en het vrae laat ontstaan oor hulle algemene diversiteit en rol binne hierdie unieke nis. Alhoewel myte duidelik ‘n integrale deel vorm van Fynbos ekosisteme en waarskynlik ‘n belangrike rol speel in Protea populasie-dinamika, is daar ‘n algemene leemte in ons kennis van mytdiversiteit binne die Kaapse Floristiese Ryk (KFR). Hierdie organismes affekteer nie slegs ekologiese prosesse binne die KFR nie, maar ook die ekonomiese waarde van Protea-uitvoere. Hierdie studie mik as vertrekpunt om die verkillende myt-gemeenskappe binne die vrugtekoppe van verskeie Protea spesies te beskryf. In die proses is die rol van verskillende omgewingsveranderlikes en verskille in gasheer kenmerke wat hierdie gemeenskappe affekteer, ook ondersoek. ‘n Totaal van 24281 myt individue, saamgestel uit 36 morfspesies in 23 families, mytgemeenskappe is beduidende beinvloed deur die taksonomie van die plant, die fenologie en die vrugtekop-argitektuur van verskillende Protea spesies. Op ‘n temporale skaal is gevind dat vrugtekop-ouderdom en seisoen beduidende faktore is in die samestelling van mytgemeenskapstruktuur. Versamel-lokaliteit het verder mytgemeenskappe binne die vrugtekoppe mytgemeenskappe binne ‘n enkele gasheerspesie getoon nie. Geografiese afstand het geen beduidende invloed op mytgemeenskapstruktuur binne Protea vrugtekoppe getoon nie. Dit faktore in soos die metode van bestuiwing van die gasheer plant, die vlak van saadhoudendheid van die Protea koppe en plant-lewensvorm. Verskeie nuwe myt spesies wat uit Protea vrugtekoppe versamel is, word ook in hierdie studie beskryf. ‘n Identifikasie-sleutel vir die Tydeidoidae van Suid-Afrika word verder vir die eerste keer hier verskaf. Hierdie studie vorm die basis datastel vir toekomstige studies van die biodiversiteit van myte in hierdie besonder diverse eko-omgewing.

Thesis (MSc)--Stellenbosch University, 2015.
ENGLISH ABSTRACT: Understanding the effects of climate change is one of the cardinal issues within the natural resource management circles. Increased droughts are part of these changes. Afrotemperate forests, as well as their drier Afromontane counterparts suffer from periodic and seasonal droughts respectively. To better understand the effect of droughts on these forests, three key species namely Olea capensis (Iron wood), Podocarpus latifolius (Common Yellow wood) and Pterocelastrus tricuspidatus (Candle wood), were analysed using dendroecologic techniques. Two sites in the Southern Cape were selected according to a West-to-East moisture gradient, with the drier site being close to George and the medium moist site at the Diepwalle estate in the vicinity of Knysna. Growth ring measurements from each of the species were used to calculate basal area and basal area increment during the lifetime of the trees. Drought years for the sites were then selected based on the Standardised Precipitation and Evapotranspiration Index (SPEI), also indicated by the growth during the drought periods. Differences in growth patterns for all three species were observed. An event analysis was then used to quantify the difference in the resistance (Rt), recovery (Rc), resilience (Rs) and relative resilience (RRs). With values standardised around one (Rt, Rc and Rs) and zero (RRs), it was seen that the Candle wood had the highest (~0.92) resistance and the Yellow wood had the highest (~1.3) recovery after the drought. Iron wood stood apart from the other two species in the sense that it only reacted negatively towards the drought one year after the event in most cases. It was concluded that each of the species were significantly different in their reactions towards drought. This specific difference in drought reaction can give way to the possibility that the species together adapted to relieve the stress of a short drought by splitting the available resources over a longer period.
AFRIKAANSE OPSOMMING: Dit is van uiterse belang vir bestuur doeleindes om die veranderende klimaat oor die wêreld te verstaan, insluitend die droogtes wat daarmee gepaard gaan. Die Afrotemperate woud-tipe, asook sy droeër teenstaander, die Afromontane, lei gereeld aan sporadiese en seisonale droogtes. Om hierdie woud-tipe se reaksie tot droogtes beter te verstaan, was drie boom spesies naamlik Ysterhout (Olea capensis), Kershout (Pterocelastrus tricuspidatus) en gewone Geelhout (Podocarpus latifolius), gekies vir die gebruik in ‘n dendro-ekologiese studie. Twee areas was gekies van ‘n wes-tot-oos droogte gradient, met die droeër blok in die George omgewing en die meer vogtige een naby aan Knysna. Die jaarring metings van elke boom was gebruik om beide die basale oppervlakte en die basale oppervlak groei per jaar aan te teken. ‘n Gestandardiseerde reenval en evapotranspirasie indeks (SPEI) was gebruik om vas te stel jare waarin matige tot sterk droogtes gebeur het. Hierdie gekose jare het aanduiding gegee dat daar wel ‘n verskil waargeneem was in die groei patrone van elke spesie gedurende die droogtes. ‘n Gebeurtenis analise is gebruik om ‘n kwantitatiewe verskil te kon sien in die weerstand (Rt), herstel (Rc), weerstandbiedendheid (Rs) en relatiewe weerstandbiedendheid (RRs). Die was waargeneem dat Kerhout die hoogste weerstand (0.92) toon, terwyl die Geelhout ‘n hoër herstel waarde (1.3) gehad het. Ysterhout het apart van die ander twee spesies gestaan in dìe dat dit eers een jaar na die droogte ‘n reaksie getoon het teenoor die droogte. Dit was dus gevind dat daar spesifieke verskil is tussen al drie van die spesies teen opsigte van stres reaksies was. Hierdie verskil kan dan wel ook moontlik aandui dat hierdie spesies en woud-tipe op so ‘n anier aangepas is dat dit die stress gedurende ‘n kort droogte versprei oor ‘n langer tydperk.

Thesis (PhD (Conservation Ecology and Entomology))--University of Stellenbosch, 2010.
ENGLISH ABSTRACT: Invasive alien trees (IATs) and agriculture are rapidly altering the capacity of ecosystems to provide a variety of essential services, with decreasing habitat quality having an adverse effect on arthropod biodiversity. Although both agricultural intensification and IATs have an impact on ecosystems, it is unclear which of these two is currently the most severe. Here I compare the influences of vineyards and IATs on arthropod diversity in the Cape Floristic Region (CFR) from two perspectives. Firstly, insect diversity from four different vegetation types (native fynbos, IATs, cleared invasive alien trees (CIATs) and vineyards), and their ecotones were assessed. Secondly, soil compaction in the different vegetation types was assessed and compared to determine how soil compaction relates to arthropod species richness and abundance. Surface-active arthropods were used for these evaluations, as they were considered to be the most abundant, yet sensitive groups for these comparative assessments. Pitfall trapping, which has been widely used for such comparative studies, was the method of choice. Additionally, as a result of incidental wildfires at some of the study sites (IATs and fynbos vegetation), it was decided opportunistically to assess recovery of arthropod diversity following the impact of fire. The results categorically indicate that IATs had by far the most significant impact, in comparison with vineyards, in reducing arthropod diversity and changing assemblage composition. Both IATs and vineyards, not surprisingly, supported lower arthropod diversity compared to fynbos, while CIATs supported arthropod species richness comparable to that of fynbos. However, different invertebrate species responded differently to IAT invasion, with some species even adapted to conditions in IAT patches. Environmental factors such as leaf litter and soil compaction were strongly correlated with arthropod species richness. However, other factors, such as soil moisture content, were not correlated with species richness, despite varying significantly between different vegetation types. IATs were found to reduce soil compaction, while vineyards increased soil compaction. The ecotone between adjacent land-use types was important for sustaining high arthropod species richness, particularly for the CIATs/fynbos ecotone, followed by the interface between CIATs/vineyard and vineyard/fynbos. Some species even preferred ecotones. Surface-active invertebrate species richness declined substantially immediately after fire in both IATs and fynbos. Nevertheless, recovery was rapid, with some species recolonizing or re-establishing within three months. Indeed, both species richness and abundance were high following fire. Fire had no significant impact on arthropod assemblage within IATs, despite having a serious impact in the fynbos where a different arthropod assemblage was observed after fire. The recovery of the historic assemblages may be dependent on both the pre-fire composition of the habitat and its adjacent vegetation. Effective co-operation among conservation biologists, farmers, and landowners to actively plan the future of CFR landscape biodiversity is required.
AFRIKAANSE OPSOMMING: Indringer uitheemse bome (IUB) en landbou bedrywighede is vinnig besig om die kapasiteit van ekosisteme vir die voorsiening van „n verskeidenheid van noodsaaklike dienste, met „n afname in habitatkwaliteit en „n nadelige uitwerking op artropood biodiversiteit, te verander. Alhoewel beide, landbou intensifikasie en IUB‟s, ‟n impak op ekosisteme uitoefen, is dit onduidelik watter van hierdie twee huidig die mees ernstige een is. In hierdie studie vergelyk ek die invloed van wingerde en IUB‟s op artropood diversiteit in die Kaapse Floristiese Streek (KFS) vanuit twee perspektiewe. Eerstens, insekdiversiteit van vier verskillende vegetasietipes (natuurlike fynbos, IUB‟s, verwyderde indringer uitheemse bome (VIUB‟s) en wingerde) en hulle ekotone is bepaal. Tweedens, is grondverdigting in en van die verskillende vegetasietipes ondersoek en vergelyk om te bepaal hoe grondverdigting verband hou met artropood spesies rykheid en volopheid. Oppervlak-aktiewe artropode is vir hierdie bepalings gebruik aangesien hulle beskou word as die mees volopste, maar ook mees sensitiewe groepe vir hierdie vergelykende bepalings. Pitvalvangste, wat alom gebruik word vir sulke vergelykende studies, was die verkose werkswyse. Bykomend, as gevolg van onbeplande veldbrande in sommige studie gebiede (IUB‟s en fynbos plantegroei), is oppertunisties van die geleentheid gebruik gemaak om die herstel van artropood diversiteit na die impak van brand te bepaal. Die resultate toon duidelik aan dat IUB‟s, in vergelyking met wingerde, by verre die mees beduidende impak gehad het deur ‟n verlaging van artropood diversiteit en veranderende groeperingssamestellings. Beide, IUB‟s en wingerde, het, nie onverwags nie, in vergelyking met fynbos, laer artropood diversiteit ondersteun, terwyl VIUB‟s artropood spesies verskeidenheid, vergelykbaar met dié van fynbos, ondersteun het. Verskillende invertebrate spesies het egter verskillend gereageer op IUB indringing, en sommige spesies het selfs by toestande in IUB kolle aangepas. Omgewingsfaktore soos blaarafval en grondverdigting was sterk gekorrelleer met artropood spesies rykheid. Ander faktore, soos grondvoginhoud, was egter nie in ooreenstemming met spesies rykheid nie, ten spyte van ‟n beduidende wisseling tussen verskillende vegetasietipes. IUB‟s het grondverdigting verminder, terwyl by wingerde grondverdigting toegeneem het. Die ekotone tussen aanliggende grondgebruike was belangrik om hoë artropood spesies rykheid, veral by die VIUB‟s/fynbos ekotoon, gevolg deur die kontaksones tussen VIUB‟s/wingerd en wingerd/fynbos, te onderhou. Sommige spesies het selfs ekotone verkies. Oppervlak-aktiewe invertebraat spesies rykheid het onmiddelik na brand in beide, IUB‟s en fynbos, wesenlik afgeneem. Tog was herstel vinnig, met sekere spesies wat binne drie maande teruggekeer of hulle hervestig het. Inderdaad was beide, spesies rykheid en volopheid, hoog na ‟n brand. Brand het geen noemenswaardige invloed op artropood groeperings binne IUB‟s gehad nie, ten spyte van ‟n ernstige impak in fynbos waar ‟n verskillende artropood groepering na ‟n brand waargeneem is. Die herstel van die historiese groeperings van beide, die voor-brand samestelling van die habitat en sy aangrensende plantegroei, mag afhanklik wees. Effektiewe en aktiewe samewerking tussen bewaringsbioloë, boere, en grondeienaars om die toekoms van KFS landskap biodiversiteit te beplan, word benodig.

This work centered on the tadpoles in a temporaray pond in the middle of Kenilworth racecourse, Cape Town, South Africa. Trapping was carried out over two wet seasons and five species were found. The racecourse was selected to investigate the tadpole community occupying temporary winter pools. The main focus of this study was the community of tadpoles that occur in the ephemeral ponds in the centre of Kenilworth Racecourse. This study was a very broad insight into tadpole ecology in the Western Cape.

Thesis (MSc)--University of Stellenbosch, 2005.
ENGLISH ABSTRACT: The primary aim of this study was to assess and compare the ecological integrity of the Lourens, Palmiet and Hout Bay Rivers (South Western Cape, South Africa) by examining the macroinvertebrate community structure at a series of representative sampling sites along the course of each river, using the South African Scoring System - Version 5 (SASS-5) rapid bioassessment method. Secondary aims included an examination of the effects of seasonal variability, biotope availability and site-specific environmental variables on the macroinvertebrate community structure at sampling sites, as well as the preliminary testing of the Integrated Habitat Assessment System (IHAS) for aquatic macroinvertebrates. According to results obtained, the ecological integrity of sampling sites in the Mountain Stream Zone of the three rivers was consistently good. The Hout Bay River in the upper portions of the Orange Kloof Reserve was particularly near-pristine, with this area having been identified in this study as a potential biodiversity ‘hot-spot’ for aquatic macroinvertebrates. Downstream of the Mountain Stream Zone, there was a significant deterioration in the ecological integrity of all three rivers due to a number of probable causes. Results based on recorded SASS Scores and Average Score per Taxon (ASPT) values, using ‘biological bands’ generated from reference sites in the South Western Cape, were generally similar to and supported by the corresponding multivariate analyses undertaken. From the results of the various analyses undertaken in this investigation and some of the problems encountered in interpreting the data, a number of recommendations are made regarding future bioassessment studies based on the SASS within the national River Health Programme (RHP). To test the IHAS, secondary data were obtained from reference sites in the Mpumalanga and Western Cape Provinces of South Africa. Assuming that SASS Scores at reference sites are the highest scores attainable, one would expect to find a positive relationship between SASS Scores and IHAS scores at reference sites. The assumption in this investigation was that this relationship should be linear. Non-parametric correlation analyses were undertaken between SASS-4/5 Scores and IHAS scores, using Kendall’s Rank-correlation Coefficient (τ), with separate analyses undertaken for different geomorphological zones and biotope groups. Correlations between SASS Scores and IHAS scores were generally weak (τ-values mostly < 0.3) and unsatisfactory, with no significant correlations (p < 0.05) for two-thirds of the data sets analysed and a wide degree of scatter generally observed amongst data points in respective scatter plots. The performance of the IHAS varied between geomorphological zones and biotope groups, with the Foothill: Gravel-bed Zone in Mpumalanga showing the best results, particularly when the stones-in-current biotope group was analysed separately. Further testing of the IHAS is required to confirm its relative performance in different bioregions/ecoregions, geomorphological zones and biotope groups, which should be undertaken as a priority research area within the RHP. Unsuccessful attempts to test the IHAS by means of multiple regression analyses were undertaken, suggesting that such techniques should be avoided in further testing of the IHAS.
AFRIKAANSE OPSOMMING: Die hoofdoel van hierdie studie was om die ekologiese toestand van die Lourens-, Palmiet- en Houtbaairiviere (Suidwes Kaap, Suid Afrika) te bepaal en te vergelyk deur die bestudering van die makroinvertebraatgemeenskapstruktuur by verteenwoordigende monsterpunte langs die riviere, met gebruik van die “South African Scoring System” – Weergawe 5 (SASS-5) snelle biologiese bepalingsmetode. Sekondêre doelwitte het die bepaling van die gevolge van seisoenele veranderlikheid, biotoop beskikbaarheid en ligging-bepaalde omgewingsveranderlikes op die makroinvertebraatgemeenskapstruktuur by monsterpunte ingesluit, asook die inleidende toetsing van die “Integrated Habitat Assessment System” (IHAS) vir watermakroinvertebrate. Volgens die resultate verkry, was die ekologiese toestand van monsterpunte in die Bergstroomsone van die drie riviere konsekwent goed. Die Houtbaairivier in die boonste gedeelte van die Oranjekloofreservaat was veral feitlik onversteurd en hierdie streek is in die studie as ‘n potensiaal biodiversiteit “hot-spot” vir watermakroinvertebrate geidentifiseer. Stroomafwaarts van die Bergstroomsone was daar ‘n beduidende verswakking in die ekologiese toestand van al drie riviere, as gevolg van ‘n aantal moontlike oorsake. Resultate gebaseer op bepaalde “SASS Scores” en ‘Gemiddelde Waarde per Takson’ (“Average Score per Taxon” - ASPT) waardes, met gebruik van ‘biologiese bande’ wat van verwysingsmonsterpunte in die Suidwes Kaap afgelei is, was oor die algemeen soortgelyk aan en gestaaf deur die ooreenstemmende multiveranderlikke (“multivariate”) statistiese analises wat gedoen is. Uit die resultate van die verskeie analises wat in hierdie ondersoek gedoen is en sommige van die probleme wat in die dataverklaring gevind is, is ‘n aantal aanbevelings gemaak met betrekking tot toekomende biologiese bepalingstudies vir die nasionale Riviergesondheidsprogram (“River Health Programme” - RHP) wat op die SASS gebaseer is. Om die IHAS te toets is sekondêre data van verwysingsmonsterpunte in die Mpumalanga en Wes Kaap Provinsies van Suid Afrika verkry. As aangeneem word dat die “SASS Scores” by verwysingsmonsterpunte die hoogste moontlike tellings is wat bereik kan word, sou ‘n positiewe verwantskap tussen “SASS Scores” en IHAS tellings by verwysingsmonsterpunte verwag word. Die veronderstelling in hierdie studie was dat dié verwantskap lineêr moet wees. Nie-parametriese korrelasieanalise tussen “SASS-4/5 Scores” en IHAS tellings is gemaak, deur gebruik van Kendall se Rangkorrelasiekoëffisiënt (τ), met afsonderlike analises vir verskillende geomorfologiese sones en biotoopgroepe verrig. Korrelasies tussen “SASS Scores” en IHAS tellings was algemeen swak (τ-waardes < 0.3) en onbevredigend, met geen beduidende korrelasies (“p” < 0.05) vir twee-derdes van die datastelle wat geanaliseer is nie en ‘n wye verspreiding tussen datapunte in die onderskeie “scatter plots” wat waargeneem is. Die funksionering van die IHAS was verskillend tussen geomorfologiese sones en biotoopgroepe. Die beste resultate is vir die Voorheuwel: Gruisbeddingsone in Mpumalanga verkry, veral indien die klippe-in-stroom biotoopgroep afsonderlik geanaliseer is. Verdere toetsing van die IHAS is nodig om die relatiewe funksionering in verskillende biostreke/”ecoregions”, geomorfologiese sones en biotoopgroepe te bevestig en dit behoort voorangs te geniet binne die RHP. Pogings om die IHAS deur middel van veelvoudige regressie analise te toets het misluk, wat aandui dat sulke tegnieke vermy moet word in verder toetsing van die IHAS.

Bibliography: leaves 104-118.
This study gives a first-order estimation of the chemical composition of the recharge, discharge, and ground waters, along with the bedrock, soil, and vegetation of the Olifants River Valley around Citrusdal. The valley occurs in a synclinal fold with the main aquifers, the Table Mountain Group (MG) sandstones of the Peninsula Formation and the Nardouw Subgroup, folded beneath the central valley.

>Magister Scientiae - MSc
Riparian vegetation occurs in two distinct zones, the wet bank and the dry bank. Knowledge on how the flow regime influences the zonal structure of riparian vegetation is required to mitigate the adverse effects of water resource utilization on riparian vegetation. The first objective of this study was to determine whether flow exerts a physical influence on zonal structure pre- or post-recruitment. An examination of the survival of seedlings and saplings was conducted along Western Cape rivers to investigate seedling persistence and survival on lateral zones. A comparison of the ratios of seedlings, saplings and adults in different riparian zones for the years, 2004, 2011 and 2013, was carried out. The results suggest that in general seeds are deposited randomly on the banks, where they germinate and become seedlings. Seedlings that become established at locations unsuitable for their persistence into adulthood are removed either by high flows or perish during dry conditions. Thus, lateral zonation eventually develops due to species differences in tolerance to conditions at different positions on the banks. The second objective was to explore the effects of the reduction in dry season low flows on the recruitment success of riparian species at sites upstream and downstream of abstraction points. At most sites plants were arranged into different lateral zones and the numbers of species between upstream and downstream sites were not significantly different. There were significant differences in the abundances between up- and downstream sites, with the loss of herbaceous plants and sedges at downstream sites, both of which favour moist conditions. Also, in the absence of dry season flows, the seedlings of dry bank tree species recruited closer to the channel than those at the sites with summer flows. The shifting of the dry bank into the channel narrows the channel, which may affect the hydraulic pressures exerted during floods. The spatial arrangement in the riparian zone has as much to do with flow conditions post recruitment as it does with conditions during recruitment. This shows that the structure of riparian plants is determined not only by whether or not the minimum flows are met, this points to the need to reinstate the naturally variable flow and adopting a holistic approach for the understanding and management of aquatic systems.

Thesis (MScConEcol (Conservation Ecology and Entomology))--University of Stellenbosch, 2011.
ENGLISH ABSTRACT: Heuweltjies are below ground termitaria found along the west coast and the south-western and -eastern Cape. They traversing different climates, soil and vegetation types within the Succulent Karoo and Fynbos biomes. From a birds eye view, heuweltjies appear as near-circular landscape features, demonstrating clear difference in vegetation structure to their surroundings. A study of aspects of the structure and function of heuweltjies, mima-like mounds of south-western South Africa was undertaken. The main aim of the study was to investigate topsoil properties and processes and vegetation structure and the ecophysiology of plants growing on these mounds, and compare it to areas off these patches. Four study sites across a rainfall gradient were chosen for soil and vegetation studies (two within the Succulent Karoo and two at the Fynbos biome). Ten sampling sites on heuweltjies and 10 off heuweltjie (interpatch) were chosen at each study site for these analyses. Soils samples from the top 10 cm were analysed for total nitrogen (N) and carbon (C) content, phosphorus (P) concentrations, particle-size distributions, pH and electrical conductivity (related to salinity). Soil biogeochemistry studies (i.e. potential N mineralization, potential soil respiration and phosphatase activity) were also done in the laboratory. In the field, the cover of soil cryptogams, selected plant growth forms and selected physical variables at each site, on and off heuweltjies, were estimated on 1m2 grids. Two of the study sites, one in the Succulent Karoo and one in Fynbos, were chosen for field measurements of stomatal conductance, predawn and midday xylem water potentials of two growth forms (deciduous and evergreen non-succulent shrubs) at selected times in the duration of the study. Leaf samples were taken to make once-off measurements of specific leaf area, C and N isotope compositions (δ13C, δ15N), and foliar N content. Furthermore, a fertilization experiment that has been running at the Tierberg Karoo Research Centre (Succulent Karoo) since 1997, where 10g m-2 of N have been added to interpatch vegetation twice annually, was included in the stomatal conductance and xylem water potential studies. The aim of including the fertilization experiment was to ascertain whether interpatch vegetation will eventually resemble heuweltjie vegetation in ecophysiology following N fertilization. Soil water probes were inserted, 10 cm deep, on one on heuweltjie and one off heuweltjie site for the long-term estimation of gravimetric water content and temperature at the Tierberg Karoo Research Centre. Heuweltjie soils were found to be hotspots for nutrients and biogeochemical activity. They had elevated levels of total % C, % N and available P (mg kg-1) compared to surrounding interpatch soils. pH and electrical conductivity (μS cm-1) of these soils were also high compared to interpatch areas. Heuweltjie soils have higher silt content and retain more water, and for a longer period following a rainstorm. Potential soil respiration, potential N mineralization and alkaline and acid phosphatase activity were generally higher on heuweltjies.Cover of the selected plant growth forms differed little between heuweltjies and the surrounding vegetation but site differences were observed. Heuweltjies differed from interpatches in the cover of soil cryptogams, with higher cover of mosses and lower cover of lichens on mounds. There was higher cover of plant litter and termite frass on the heuweltjies.There was a decrease in soil available P and increase in non-succulent shrub cover from low to high rainfall areas. On the other hand no significant differences were found in the xylem water potential of interpatch and heuweltjie plants at either of the study sites. At the Tierberg Karoo Research, stomatal conductance of interpatch plants was higher and water use efficiency (δ13C) lower compared to that of heuweltjie plants suggesting some level of water stress for heuweltjie plants at this site. Here, heuweltjie plants also had higher foliar N, lower C/N ratio values, signs of high photosynthetic potential and highly decomposable litter and higher δ15N. At Jonaskop, stomatal conductance and water use efficiency did not differ between heuweltjies and interpatch plants. There were also no differences in foliar N concentrations, C/N ratios and δ15N between heuweltjie and interpatch plants at this site. Plants growing in high N plots (the fertilizer plots) had higher xylem water potential and more variable stomatal conductance than those growing in control plots. The results of this study have shown heuweltjies to be hotspots for nutrients and biogeochemical cycling, and given enough water, will be ideal patches for plant growth. In the Succulent Karoo, high salinity (and finer textured soils) on the heuweltjies may contribute to water stress during dry periods, and together with disturbance, provide bottom-up controls on plant physiology, and ultimately, vegetation structure. In the Fynbos, plants may be limited by nutrients on heuweltjies, possibly because of increased interspecific competition, while increased rainfall may also lead to more nutrients leaching from the topsoils. The results presented are especially relevant to restoration programs, and may shed some light on restoration trajectories after overgrazing, cultivation and mining activities.
AFRIKAANSE OPSOMMING: Heuweltjies is ondergrondse termitaria wat langs die weskus, die suid-wes en oos Kaap van Suid Afrika voorkom. Hulle kom voor onder verskillende klimaatstreke, grondtipes en planttipes wat binne die Sukkulente Karoo en Fynbos biome voorkom. Vanuit die lug uitgesien, verskyn heuweltjies as sirkelvormige landskapseienskappe, wat duidelike verskille in plant struktuur en die omringende omgewing demonstreer. ʼn Studie van aspekte van struktuur enfunksie van ʼn heuweltjies, mima-agtige hope vansuidwestelike Suid-Afrikais onderneem. Die hoofdoel van die studie was om die eienskappe van oppervlakgrondeen -prosesse, plant struktuur, en die ekofisiologie van plante wat op heuweltjies groei te ondersoek, en dit te vergelyk met areas af van hierdie kolle. Vier studieareas wat oor „n reënvalgradient strek is gekies vir grond en plantegroei studies (twee binne die Sukkulente Karoo en twee binne die Fynbos biome). Tien monsterareas op heuweltjies en 10 af van heuweltjies (omringende areas) is gekies binne elke studiearea vir die bogenoemde analises. Grondmonsters van die boonste 10 cm van die grond is geneem en geanalieseer vir totale stikstof (N) en koolstof (C), fosfor (P) konsentrasies, gronddeeltjiegrootte, pH, en elektriese geleidingsvermoë, (hou verband met soutgehalte). Grond biogeochemie studies (d.i. potensiële stikstof mineralisasie, potensiële grond respirasie en fosfatase aktiwiteit) is ook in die laboratorium uitgevoer. In die veld was die dekking van grond kriptogame, geselekteerde plant groeivorms en fisiese veranderlikes by elke lokaliteit, beide op en van heuweltjies op 1m2vierkante bereken. Twee studie lokaliteite, een in die Sukkulent Karoo en een in die Fynbos, is gekies vir veld metings van huidmondjiegeleiding, voor dagbreek en middag xileem potensiale van twee groei vorms (bladwisselende en immergroen nie-sukkulente struike) op geselekteerde tye gedurende die studie. Blaarmonsters is geneem om eenmalige metings te maak van die spesifieke blaararea, C en N isotoop komposisies (δ13C, δ15N), en blaar N inhoud. Verder is „nbemestingseksperiment wat by die Tierberg Karoo Navorsing Sentrum (Sukkulente Karoo) loop sedert 1997, waar 10gm-2 van N jaarliks twee keer bygevoeg word by die plante wat tussen heuweltjies groei ingesluit in die stomata geleiding en xileem water potensiaal studies. Die doel van die bevrugting eksperiment was om vas te stel of die omliggende plante (af van heuweltjies) uiteindelik soos die van die heuweltjiessal lyk in terme van ekofisologie nadat dit met stikstof bemes is. Grondwater monitoreringsapparaat was ingesit (10cm diep) op een op heuweltjie en een lokaliteitaf van die heuweltjie vir die langtermyn bepaling van gravimetriese water inhoud (m3m-3) en temperatuur by die Tierberg Karoo Navorsing Sentrum. Daar is gevind dat grond op heuweltjies “skerpkolle” is vir voedingstowwe en biogeochemiese aktiwiteit. Hulle het ook verhoogte vlakke van totale %C, % N, en beskikbare P (mg kg-1) teenoor die omliggende areas om die heuweltjies. pH en elektriese geleidingsvermoë (μS cm-1) van hierdie gronde was ook hoër in vergelyking met die omliggende areas. Heuweltjie grond het „n hoër sout inhoud gehad en behou meer water vir ʼn langer periode na ʼn reënstorm. Potensiële grond respirasie, potensiële stikstof mineralisasie, en alkaliese en suur fosfatase aktiwiteit is oor die algemeen hoër op heuweltjies. Die voorkoms van die geselekteerde plant groeivorms verskil min tussen heuweltjies en die omliggende omgewing, maar verskille tussen studie areas is opgemerk. Heuweltjies het verskil van areas af van heuweltjies in die voorkoms van grond kriptogame, met ʼn hoër voorkoms van mosse en ʼn laer voorkoms van ligene op die heuweltjies. Daar was hoër voorkoms van plantafvalmateriaal en termiet uitwerpsel op die heuweltjies. Daar was ʼn afname in grond P (mg kg-1) en ʼn toename in nie-sukkulente struik bedekking van lae tot hoë reënval areas. Daar was geen verskil in die xileem water potensiaal van plante op die heuweltjies of af van die heuweltjies by enige van die studie lokaliteite nie. By die Tierberg Karoo Navorsing Sentrum was huidmondjie geleiding van plant in die areas tussen heuweltjies hoër en die water gebruik doeltreffendheid (δ13C) laer in vergelyking met die van die heuweltjie plante, wat op„n sekere vlak waterstres dui in heuweltjie plante by hierdie studiearea. Hier het heuweltjie plante ook hoër blaar N, laer C/N waardes, tekens van hoër fotosintetiese potensiaal en hoogs afbreekbare afvalmaterialgehad asook hoër δ15N. By Jonaskop het huidmondjie geleiding en water gebruik doeltreffendheid nie verskil tussen heuweltjie en omliggende plante nie. Daar was ook geen verskille in blaar N konsentrasies, C/N verhoudings en δ15N tussen heuweltjie en omliggende plante by hierdiestudiearea nie. Plante wat groei in hoë stikstof plotte, het hoër xileem water potensiaal (minder stres) en meer veranderlike stomatal geleiding as die plante wat in die kontrole plotte groei. Die resultate van die studie het getoon dat heuweltjies “skerpkolle” is van voedingstowwe en biogeochemiese siklusse, en gegewe genoeg grondwater, sal ideale areas wees vir die groei van plante. In die Sukkulente Karoodra hoë soutgehalte (en fyner grond teksture) op die heuweltjies by tot water stres gedurende droë tye, en saam met versteurings dra dit by tot grond tot plant kontrole op plantfisiologie, en uiteindelik plant gemeenskapsstruktuur. In die Fynbos word plante op die heuweltjies beperk deur te min voedingstowwe, moontlik omdat daar ʼn toename is in intraspesifieke kompetisie, terwyl hoër reenvalkan lei tot hoër loging van voedingstowwe vanuit die bogrond. Die resultate wat hier gerapporteer word is veral relevant vir restourasieprogramme, en mag lig werp op restourasie trajekte na oorbeweiding, aanplanting van gewasse en mynbou-aktiwiteite.

Thesis (MA.)--Stellenbosch University, 2001.
ENGLISH ABSTRACT: There are many reasons to conserve fynbos. Not only does fynbos form part of the Cape floral kingdom, one of the richest floral kingdoms in the world, but the contribution that it makes to the regional economy through utilisation, education, recreation and tourist opportunities is immeasurable. Fire plays an integral role in fynbos ecosystems. According to Van Wilgen, Richardson & Seydack (1994: 322) " ... managing fynbos equates to managing fire". Therefore managers need accurate fire information about a fynbos area to manage it properly. This is where satellite remote sensing can provide the manager with useful information about the fire regime. In other words, satellite remote sensing can help a manager establish where and when an area has burnt. Using readily available satellite data, this study attempts to establish (through comparison) what techniques would be most suitable and affordable to compile a fire information database. Landsat Thematic Mapper data from 1990 - 1996 of the southwestern Cape was used and compared with existing fire records of the area. The results show that techniques such as supervised and unsupervised classification are reliable in identifying burnt areas, but a major drawback of these techniques is that they require a large amount of user input and knowledge. They are thus not regarded as simple or easily repeatable. - The' more simple techniques like image differencing and image ratioing were also found to be reliable in identifying burnt areas. These techniques require less user input and in some instances less data (image bands) to produce similar (or better) results than supervised and unsupervised classification techniques. The results show that differencing temporally different Images, obtained from applying principle components analysis, produces reliable results with very little confusion and little user input. Using such a technique could enable users to procure only two bands of Landsat data and still produce reliable fire information for managing a fynbos ecosystem.
AFRIKAANSE OPSOMMING: Daar is verskeie redes waarom fynbos bewaar moet word. Nie net vorm dit deel van een van die rykste blommeryke in die wereld nie, maar die bydrae wat dit tot die streeksekonomie maak, deur die benutting van veldblomme en die geleenthede wat dit bied vir toerisme en ontspanning, is enorm. Vuur speel 'n belangrike rol in die bestuur van fynbos ekosisteme. Soos beklemtoon deur Van Wilgen, Richardson & Seydack (1994: 322) se stelling: " ... managing fynbos equates to managing fire". Om hierdie rede is dit belangrik dat 'n bestuurder akkurate inligting oor die verspreiding van veldbrande moet he. Satellietafstandwaarneming kan hier 'n belangrike rol speel deur sulke inligting te verskaf Deur gebruik te maak van maklik bekombare satellietdata, poog hierdie studie om te bepaal (d.m.v. vergelyking) watter tegnieke die mees geskikte is in terme van bekostigbaarheid en gebruikersvriendelikheid. Landsat Thematic Mapper data van 1990 tot 1996 van die suidwes-Kaap is gebruik en vergelyk met bestaande branddata van die studiegebied. Daar is gevind dat tegnieke soos gerigte en nie-gerigte klassifikasie in staat is om gebrande dele betroubaar uit te ken. Hierdie tegnieke verg egter baie insette en kennis van die gebruiker en is ook nie maklik om jaar na jaar te herhaal nie. Daarom word hierdie tegnieke nie aanbeveel nie. Daar is gevind dat die eenvoudiger tegnieke soos veranderingsanalise ook gebrande dele betroubaar kon uitken. Hierdie tegnieke het die voordeel dat die gebruiker nie baie' kennis van die gebied hoef te he nie en ook nie so baie insette hoef te lewer nie. Hierdie tegnieke word bo gerigte en nie-gerigte klassifikasie aanbeveel. - Die resultate dui daarop dat betroubare resultate verkry kan word deur tempo reel verskillende beeIde, verkry deur hoofkomponentanalise, van mekaar af te trek. Hierdie tegniek vereis relatief min gebruikersinsette en daar kan selfs met slegs twee Landsat bande gewerk word. So 'n tegniek kan beslis 'n bekostigbare en effektiewe manier wees om nodige inligting vir die bestuur van 'n fynbos ekosisteem te bekom.

Thesis (MTech (Nature Conservation))--Cape Peninsula University of Technology, 2015.
The klipspringer (Oreotragus oreotragus subsp. oreotragus) population became extinct on the Cape Peninsula in 1930. Being re-introduced into Table Mountain National Park (TMNP) in 1999 it became one of the species of special conservation concern to monitor in the Park. Most klipspringer territories are known by Park management but the distribution of all potentially suitable habitats for this species in the Park is not known. The main aim of this study is to produce a distribution range map that is representative of all potentially suitable habitats for the klipspringer within TMNP, through the use of a species distribution modelling tool. Since only presence data were available for this study, a popular presence-only modelling tool namely maximum entropy (MaxEnt) was used. The use of MaxEnt in species distribution modelling has become popular as it has proven to provide robust predictions of a species’ geographic distribution. Klipspringer occurrence data and five environmental variables namely altitude, slope, aspect, vegetation, and distance to urban edge were used as model input. Occurrence data were sourced through existing databases and employing a stratified random sampling technique of dividing the Park into different habitat subtypes to survey the Park for more klipspringer occurrences. These habitat subtypes consisted of a variety of vegetation communities or vegetation types and altitudinal and slope ranges available in the Park. Grid size for all the raster layers used was 10x10 m. Spatial filtering of one point per 100 m² grid was used to eliminate clumping of points. Six models were run at different regularisation multiplier (RM) values namely 0.25, 0.5, default (1), 2, 4 and 7. To assist in better understanding of the spatial extent of the occurrence data and the areas inhabited by the klipspringer, home range analyses were carried out. This was done through kernel density estimation in the Geospatial Modelling Environment (GME). All six bandwidth parameters in GME namely smoothed cross validation (SCV), biased cross-validation (BCV), a second BCV algorithm, plug-in estimator, least squares cross validation and the likelihood cross validation (CVh) were tested. The smoothed cross validation and likelihood cross validation bandwidth algorithms provided the best visual output of klipspringer home ranges and territories. Home range sizes from the SCV output ranged from about 3 – 11 ha across the study area, and home range size for the CVh output ranged from 0.6 – 2.5 ha. The output from the CVh algorithm was interpreted as territories rather than home ranges, as it is based on a univariate kernel unlike, the SCV algorithm that produces rotated bivariate kernels. iv The default regularisation multiplier of 1 provided the best probability distribution output, whilst values lower than the default tended to underestimate the prediction and those values higher than the default were tending towards overestimations. Response curves for the default RM also gave the most ecologically meaningful responses of the klipspringer to each environmental variable. Model evaluation in the form of area under the receiver operating characteristic curve (ROC AUC) showed that all models performed well. Therefore, the choice of the “best” model was based on the ability to provide ecological interpretation, on the shape of the response curve and the probability distribution maps. Consequently, the default RM model was considered the best, with an AUC score of 0.903. Altitude and vegetation contributed the most to suitable habitat and therefore indicates that klipspringer in the Park do prefer high altitudinal areas with the right vegetation to feed on. Suitable altitudinal ranges are from 400 m.a.s.l. and higher and ericaceous fynbos is the most preferred vegetation community. Slope, aspect and distance to urban edge played a less important role in suitable klipspringer habitat. The probability map and an additional binary map produced at the 10 percentile training logistic presence threshold showed that suitable habitat for the klipspringer occurs in all three sections of the Park in different proportions. These maps can be used by Park management to prioritise conservation efforts and future re-introductions.
National Research Foundation

Thesis submitted in fulfilment of the requirements for the degree Master of Technology: Horticulture in the Faculty of Applied Sciences at the Cape Peninsula University of Technology, 2013
Cape Flats Sand Fynbos (CFSF) is one of the most poorly conserved vegetation types in the Cape Floral Kingdom, and a large proportion of unconserved land is degraded, primarily as a result of transformation by agricultural, urban developments and invasion by alien plants. Fynbos restoration is one of the most important management interventions, both within the current conservation areas and in any future land remnants acquired for conservation. Many extant remnants are fragmented and isolated, and if successful restoration protocols are found, it may be possible to improve the conservation targets for this critically endangered vegetation type. On old fields, where indigenous soil seed banks have been lost due to alien plant invasion and anthropogenic action, it is essential to reintroduce the longer-lived fynbos components that contribute to vegetation structure, in order to facilitate the progress of the ecosystem on a more natural trajectory. This research is built on an earlier study of optimal ground-preparation treatments for restoring Sand Fynbos to old fields. This former study indicated that fossorial mammals (molerats and gerbils) may occur in dense colonies on old fields and present an obstacle to successful seedling establishment. The project aims to provide protocols for the establishment of indigenous seedlings from harvested seed onto old fields, in order to restore Sand Fynbos vegetation. Different pre-sowing treatments and sowing techniques were tested on large field plots to determine the most efficient protocol. The objectives of the research were: a) to investigate optimal pre-sowing treatments of indigenous seed for restoring degraded Sand Fynbos vegetation in old field sites; b) to investigate optimal sowing techniques on large field plots for restoring degraded Sand Fynbos vegetation in old field sites with depleted indigenous seed banks; c) to provide guidelines and disseminate information on optimal sowing protocols, and their costs, for restoring Sand Fynbos vegetation in degraded areas and old fields. A further component of the research was to calculate the costs of all treatments on a per hectare basis in order to assess the cost-effectiveness of the different options. Several different seed treatments may potentially increase the germination rate and promote fynbos restoration. These are scarifying, smoke, smoke water, chemical, light and temperature pre-sowing treatments. In order to keep the number of treatments (including their interactions) to a manageable level, only soaking in smoke water extract and seed coat scarification with course sand and grit were tested. A seed sample of each species was x-rayed at the Millennium Seed Bank in the United Kingdom, to test for viability in the seed samples, 52 % of the seed collected were empty, a typical indication of wild harvested seed. All species were germinated at 10/25 °C and 16/8 hours light/dark respectively. Scarification had a larger overall germination success, smoke water had very little effect on CFSF species, it is rather that germination is related to temperatures during a fire that result in seed coat splitting. It was recommended that further investigation using more species across the Sand Fynbos vegetation be conducted on pre-germination effects of heat and scarification. The study site had been cleared of woody invasive alien vegetation and additional site preparation included the application of a systemic herbicide to kill undesirable herbaceous weeds, prescribed fire to clear the site of woody debris and destroy weed seeds, and the local control of fossorial mammals (gerbils and molerats) by placing raptor perches and owl nesting boxes around the site. This research found that the use of herbicide shortly after the prescribed fire and once again prior to sowing was successful in controlling herbaceous weeds and the indigenous grass Cynodon dactylon. The challenge to using prescribed burning on old fields was low fuel loads, which resulted in a cool patchy. It is suggested that cutting and spreading of alien plant biomass is tested as a solution, however, the material must be evenly spread across the site and not stacked into piles which can cause excessively hot fires and scorching of the soil. In order to better understand soil conditions across the site, soil samples were collected prior to sowing, to analyse for soil macronutrients, organic matter and pH. It was established that all the excess nutrients added to the site from agriculture and pasturage over the years had leached from the soil. However, the organic matter content of the soil was extremely low and research needs to be done on the organic carbon content of the soils, how these relate to soil micro biota (which species are present and their relationship with CFSF species) and how best to enrich the site with humic matter for restoration and establishment of Cape Flats Sand Fynbos. The field trial was set up in the Blaauwberg Nature Reserve, a random split-plot block design, was replicated five times and used to investigate the selected seedbed preparation and sowing techniques, namely: broadcast sowing onto unprepared seedbed, broadcast with plank embedding of seed onto disked seedbed, broadcast onto disked seedbed and hydro-seed with disked seedbed. Results from the research found that the most successful methods for sowing seeds were the hydro-seeding and broadcast with plank embed. These methods may have provided better contact between the soil and seeds and better protection from predation and wind. Economically the broadcast and embed was better as machinery was more efficient and effective than manual labour. This study recommended that these two methods be combined with the additional planting of rare and threatened species in clumps to determine the benefits and interactions of each technique over the long term.

Thesis (MScAgric (Conservation Ecology and Entomology)--University of Stellenbosch, 2005.
Within the Table Mountain National Park (TMNP), Western Cape, South Africa, various management practices have been undertaken in the removal of alien vegetation. While considerable success in the control of alien plants is evident from the removal of standing plants, it is not known if this effort has actually made any long-term difference in the effort to eliminate alien vegetation from the TMNP. This is because no coordinated effort has been made to assess the extent of the alien seed bank, nor the effect that clearing (including the use of fire) has on this seed store. This study investigates the extent of pre- and post-fire Acacia saligna seed banks under differing stand ages, differing clearing techniques and different habitats in the Cape Peninsula National Park. Firstly, the focus is on two alien plant management techniques: The first technique involves clearing and stacking of biomass for burning during winter (stack burn technique), the second technique involves burning of standing alien plants (standing/block burn technique) to decrease heat release at the surface. Secondly, the extent of Acacia species seed banks along the Silvermine River is also investigated with the aim of determining the extent of alien seed stores in this habitat and therefore the long-term restoration potential of the riparian corridor. The primary question addressed in the first study is: “Under what clearing technique will most of the alien seed bank be reduced?” The secondary question reads: “Is seed bank density and distribution directly related to age of dense infestation of the alien vegetation stand and habitat?” The primary question addressed in the second study is: “What is the vertical, lateral and longitudinal distribution and density of Acacia species seed banks along the Silvermine River?” The secondary question reads: “Is seed density and distribution influenced by above ground density of alien vegetation?” In both riparian and terrestrial systems, alien soil seed banks accumulate in high densities where aboveground alien Acacia vegetation is dense. Most of the seed occurs in the upper soil layer, but seed density decreases with depth with an exception of a high seed density at a low depth in one of the samples in the riparian system. Intense fires are most effective in reducing seed stores and removing aboveground alien vegetation in both riparian and terrestrial fynbos systems. After burns, both stack and stand burns have shown a significant decrease in seed density especially in the upper layers but there is still much seed that remained in the matrix area between stacks. The cooler winter burns resulted in less destructive, lower temperatures that aided higher seedling recruitment. Mature stands of Acacia saligna tend to have greater seed stores than immature stands and habitats with deep colluvial soils have a greater density and also greater vertical distribution of seeds. The vertical distribution of the riparian system differed from the fynbos terrestrial system in that seeds were found down to lower depths. Along the river, seed density also increased laterally with more seeds occurring in the terrrestrial sections than in the channel. Seed density increased with longitudinal distribution with more seeds occurring at the sites in the lower catchment than upper catchment. Managers should be aware that fire is needed to reduce the seed bank in both riparian and terrestrial fynbos systems. The cooler winter stack burns is the best option as it results in less destructive, lower temperatures that aids higher seedling recruitment. It is important to know the site history as age of dense infestation, number of fires and geology of site could influence seed bank density. In riparian systems the vertical distribution of seed is deeper than in the fynbos area. In order for clearing to be effective it is imperative that follow-up takes place and should be done prior to flowering to stop reseeding.

Thesis (MSc)--Stellenbosch University, 2003.
ENGLISH ABSTRACT: The geometric tortoise, Psammobates geometricus, found in the Western Cape, South Africa, is one of the world's rarest tortoises. At present, it is only known from five isolated geographical areas, one being the Worcester-Tulbagh Valley. The primary aims of my study were to determine the status of geometric tortoise subpopulations along the Nl highway in the Worcester Valley, to determine the population structure of these subpopulations and, if necessary, to provide recommendations for the mitigation ofNI highway-induced impacts on geometric tortoise subpopulations along the road. All Renosterveld remnants along the Nl between Du Toitskloof and Worcester were surveyed for the presence of geometric tortoises, and tortoise density and population structure were determined for each remnant that supports tortoises. Two geometric tortoise subpopulations on opposite sides of the Nl were identified. In the larger remnant of the two, females dominated both the subadult and adult classes, whereas in the other remnant male frequency was slightly higher than female frequency for the adult class only. In both remnants, adult females were significantly larger than adult males in mean carapace length. Mean body mass for adult females and males also differed significantly in both remnants. Analysis of habitat quality showed that both remnants supporting the geometric tortoise are seriously infested by encroaching indigenous and alien plants. The barrier effect of the Nl highway can be mitigated by constructing underpasses, linking the two remnants on opposite sides of the road. Furthermore, road mortality of tortoises can be avoided by erecting tortoise proof fencing along appropriate sections of the highway in the Worcester Valley. By linking the remnants, the largest single area available to the geometric tortoise in the Worcester Valley will also be formed. An additional aim of my study was to investigate the correspondence of geometric tortoise density in individual habitat remnants to the West-to-East change in vegetation composition/characteristics occurring along the Nl in the Worcester Valley. Vegetation composition/characteristics were thus determined in all remnants also surveyed for tortoises. The West-to-East change in vegetation composition/characteristics of the study area indicates that there is a transition from Renosterveld in the West to karroid veld in the East.
AFRIKAANSE OPSOMMING: Die geometriese skilpad, Psammobates geometrieus, wat in die Wes-Kaap, Suid- Afrika, voorkom, is een van die wêreld se skaarste skilpaaie. Vandag word hierdie skilpad net nog in vyf geïsoleerde geografiese streke gekry, een van hulle die Worcester-Tulbagh Vallei. Die primêre doel van my studie was om die status van geometriese skilpad subpopulasies langs die Nl snelweg in die Worcester Vallei te ondersoek en om die populasiestruktuur van hierdie subpopulasies te bepaal. Verder was die doelook, om aanbevelings te maak oor hoe die impakte van die pad op die geometriese skilpad subpopulasies langs die Nl verminder kan word. Al die Renosterveld oorblyfsels langs die Nl tussen Du Toitskloof en Worcester, en binne die bekende gebied van die geometriese skilpad, is deursoek vir geometriese skilpaaie. Populasiedigtheid en populasiestruktuur van die skilpaaie is bepaal vir elke oorblyfsel wat skilpaaie bevat. Twee geometriese skilpad subpopulasies is gekryaan teenoorgestelde kante van die Nl. In die groter oorblyfsel, het wyfies albei die onvolwasse en volwasse klasse gedomineer. In die ander oorblyfsel is gevind dat die frekwensie van mannetjies ietwat hoër was as die frekwensie van wyfies, maar vir slegs die volwasse kategorie. Binne albei oorblyfsels is gevind dat volwassse wyfies betekenisvol groter in gemiddelde doplengte is as volwasse mannetjies. Gemiddelde liggaamsgewig het ook betekenisvol verskil tussen volwasse wyfies en mannetjies in albei oorblyfsels. 'n Analise van habitatkwaliteit het gewys dat beide oorblyfsels wat die geometriese skilpad ondersteun grootliks ingeneem is deur inheemse indringers, sowel as uitheemse plante. Die versperrings effek van die Nl snelweg kan verminder word deur duikwege te skep wat die twee ooblyfsels, op teenoorgestelde kante van die pad, verbind. Bowendien, deur 'n ondeurdringbare heining langs passende dele van die snelweg in die Worcester Vallei op te rig, sal skilpadmortaliteit vermy word. Deur oorblyfsels te verbind, salook die grootste enkele area, beskibaar aan die geometriese skilpad in die Worcester Vallei, gevorm word. 'n Addisionele doel van hierdie studie was om veranderinge in vegetasie langs 'n wes-na-oos gradient binne die studie area te korreleer met die teenwoordigheid van skilpaaie langs hierdie gradient. Vegetasie samestelling/eienskappe is dus bepaal vir elke oorblyfsel wat deursoek is vir skilpaaie. Die wes-na-oos verandering in vegetasie samestelling/eienskappe binne die studie area wys dat daar 'n oorgang van Renosterveld in die weste na 'n karooagtige veld in die ooste is.

Thesis (PhD(Agric) (Conservation Ecology and Entomology))--University of Stellenbosch, 2010.
ENGLISH ABSTRACT: See full text document for abstract
AFRIKAANSE OPSOMMING: sien volteks dokument vir die opsomming

Thesis (MScAgric)--Stellenbosch University, 2012.
ENGLISH ABSTRACT: The grain chinch bug, Macchiademus diplopterus, is an endemic pest of cultivated grain crops and wild grasses in the south-western Cape region of South Africa. In early summer when host plants dry out, adult grain chinch bugs aggregate in large numbers in shelter sites in surrounding areas and enter into aestivation. These shelter sites sometimes include the stalk or calyx ends of fruit, and shelter-seeking bugs can also contaminate export fruit cartons, consequently posing a phytosanitary/quarantine risk to importing countries. Presently, there are no feasible pre- or post-harvest control measures to manage this quarantine risk. The aggregating behaviour of grain chinch bugs suggests the involvement of pheromones. Therefore, investigating the chemical ecology of grain chinch bugs for potential use in control measures is the focus of the first research chapter of this study. Gas chromatography-mass spectrometry (GC-MS) was used to identify headspace volatiles collected from aggregating bugs. Olfactometer bioassays were conducted to assess the attractiveness of each gender to separate sexes, individual compounds and a mixture of the compounds as a formulated lure. The lure was tested in field trapping trials with delta and bucket traps. In the bioassays with the live insects the response of each gender to live females was greater than the responses of each gender to live males, suggesting that females may disseminate the pheromones more efficiently than males. The following eight volatile compounds were indentified from the GC-MS analysis: hexanal, (E)-2-hexenal, (E)-2-hexenol, (E)-2-hexenyl acetate, (E)-2-octenal, (E)-2-octenol, (E)-2-octenyl acetate and tridecane. In the bioassays with individual compounds, three of these eight compounds, hexanal, (E)-2-hexenal, and tridecane, elicited attraction of both females and males. The formulated lure was attractive to both males and females in the laboratory bioassay, but this attraction was not evident in the field. In the field, there was only one occasion when a significantly higher number of bugs were caught in baited traps compared to unbaited traps. Trap catches were very low compared to the actual level of infestation in the field which was evident from corrugated cardboard bands tied around tree trunks which contained many sheltering bugs. The low trap catches seen in the field were partly due to competition between the synthetic pheromone lure and the natural pheromones emitted by aggregating live insects. Also, the characteristic shelter-seeking behaviour of grain chinch bugs influenced trap catches, as more bugs were found in places that provide shelter, like cardboard bands and walls of the delta traps. This behavior of aestivating bugs could be used to the advantage of trapping bugs by integrating sheltering sites into traps in future trials. Also, the lure needs to be improved for optimum efficiency in the field. The second research chapter also addresses the quarantine risk posed by grain chinch bugs, by investigating the thermal biology of bugs to ultimately facilitate the development of effective post-harvest treatments. Critical thermal minimum and maximum temperatures (CTmin and CTmax) of both active and aestivating bugs were subjected to critical thermal limits analysis. The CTmin and CTmax of aestivating bugs were not affected by gender (p > 0.05). There was a decrease in CTmin from the active period into aestivation for both males (2.8°C to 1.0°C (± 0.1)) and females (2.1°C to 0.6°C (± 0.1)). Also, for CTmax there was an increase in tolerance from the active period into the aestivation period for both males (49.9°C to 51.0°C (± 0.1)) and females (49.9°C to 51.5°C (± 0.1)). To determine the plasticity of grain chinch bug thermal tolerance, aestivating bugs at 27 weeks into aestivation, were acclimated at different temperatures and photoperiods [18°C (10L:14D) and 26°C (16L:8D)] for a period of seven days. Both low (18°C) and high (26°C) acclimation temperatures and photoperiods increased CTmin of aestivating grain chinch bugs at 14 weeks from 0.8°C to -1.2°C and -0.1°C (± 0.1) respectively. However, CTmax was not altered by acclimation temperatures (p > 0.82). Field temperatures at collection sites were recorded to compare to grain chinch bugs thermal tolerance levels exhibited in the laboratory. These results, as well as the effects of acclimation treatments on the CTmin of bugs, have implications for post-harvest treatments, and understanding the quarantine risk posed to importing countries. The information generated from this study can be used to further advance the development of both effective pre-harvest and post-harvest control measures to reduce grain chinch bug quarantine risk.
AFRIKAANSE OPSOMMING: Die graanstinkluis, Macchiademus diplopterus, is 'n endemiese plaag van aangeplante graangewasse en wilde grasse in die Suidwes Kaap-provinsie van Suid-Afrika. In die vroeë somer wanneer gasheerplante uitdroog, soek groot getalle volwasse graanstinkluise skuiling in die omliggende gebiede en gaan in ʼn somerrusperiode. Hierdie skuilplekke sluit soms die stam of kelk eindes van vrugte in en graanstinkluise kan ook uitvoer-vrugte kartonne kontamineer. Gevolglik word lande wat vrugte uit Suid-Afrika invoer, aan die fitosanitêre kwarantynrisiko van stinkluisbesmetting blootgestel. Tans is daar nie haalbare voor- of na-oes beheermaatreëls om hierdie kwarantyn risiko te bestuur nie. Die aggregasiegedrag van graanstinkluise dui op die betrokkenheid van ʼn feromoon. ‘n Ondersoek van die chemiese ekologie van die graanstinkluis vir moontlike gebruik in beheermaatreëls is die fokus van die eerste gedeelte van hierdie studie. Gaschromatografie-massaspektrometrie (GC-MS) is gebruik om die vlugtige organiese verbindings in die bodamp van die saamgetrosde stinkluise te identifiseer. Olfaktometriese biotoetse is uitgevoer om die aantreklikheid van die insekte vir die teenoorgestelde geslag te bepaal, asook van die individuele verbindings en 'n mengsel van die verbindings as 'n geformuleerde lokmiddel in lokvalle. Die lokmiddel is getoets in veldproewe met deltatipe en emmertipe lokvalle. In die olfaktometriese biotoetse met die lewende insekte is die reaksie van beide geslagte teenoor lewende wyfies groter as die reaksie van die geslagte teenoor mannetjies, wat daarop dui dat wyfies die feromoon meer doeltreffend as mannetjies versprei. Die volgende agt verbindings is geïdentifiseer met behulp van GC-MS-analise: heksanaal, (E)-2-heksenaal, (E)-2-heksenol, (E)-2-heksenielasetaat, (E)-2-oktenaal, (E)-2-oktenol, (E)-2-oktenielasetaat en tridekaan. In die biotoetse met individuele verbindings het drie van die agt verbindings, hexanal, (E)-2-hexenal, en tridecane, lokaktiwiteit vir beide geslagte getoon. Die geformuleerde lokmiddel was aantreklik vir beide geslagte in laboratorium toetse, maar soortgelyke lok is nie in die veld gevind nie, waar daar net een keer 'n aansienlike groter getal graanstinkluise met lokmiddel gevang is in vergelyking met lokvalle sonder lokmiddel. Die getal graanstinkluise in lokvalle was baie laag in vergelyking met die werklike vlak van besmetting in die veld, wat duidelik geblyk het uit die getalle graanstinkluise wat skuiling gesoek het in die geriffelde karton bande wat om boomstamme vasgemaak was. Die lae lokvalvangste in die veld was deels te wyte aan die kompetisie tussen sintetiese feromoon en die natuurlike feromoon van saamgetrosde insekte. Die kenmerkende aggregasiegedrag van graanstinkluise het lokvalvangste beïnvloed, aangesien meer stinkluise gevind is in plekke wat skuiling bied, soos die kartonbande en die binnekant van die delta-lokvalle. Hierdie skuilings van graanstinkluise kan in toekomstige proewe uitgebuit word deur vir meer skuilplek in lokvalle voorsiening te maak. Die formulering en die aanbieding van die lokmiddle moet ook verbeter word vir 'n optimale doeltreffendheid in die veld. In die tweede hoofstuk word die kwarantynrisiko van die graanstinkluis aangespreek deur die ondersoek van die termiese biologie van stinkluise om uiteindelik die ontwikkeling van doeltreffende na-oes behandelings te fasiliteer. Kritiese termiese minimum en maksimum temperature (CTmin en CTmax) van beide aktiewe en rustende graanstinkluise is bepaal deur analise van die kritiese termiese beperkings van die insek. Die CTmin en CTmax van rustende graanstinkluise is nie geraak deur geslag nie (p > 0.05). Daar was 'n afname in CTmin van die aktiewe tydperk tot in rus, vir beide manlike (2.8°C tot 1.0°C (± 0.1)) en vroulike insekte (2.1°C tot 0.6°C (± 0.1)). Ook vir die CTmax was daar 'n verbetering in toleransie vanaf die aktiewe tydperk tot in die rusperiode vir beide manlike (49.9°C tot 51.0°C (± 0.1)) en vroulike insekte (49.9°C tot 51.5°C (± 0.1)). Om die aanpasbaarheid van die termiese toleransie van die graanstinkluis te bepaal, is graanstinkluise 27 weke na aanvang van die rusperiode geakklimatiseer by verskillende temperature en fotoperiodes [18°C (10L: 14D) en 26°C (16L: 8D)] vir 'n tydperk van sewe dae. Beide lae (18°C) en hoë (26°C) akklimatiseringstemperature en fotoperiodes het onderskeidelik die CTmin van rustende graanstinkluise op 14 weke verhoog van 0.8°C tot -1.2°C en -0.1°C (± 0.1). Daar is egter geen effek op CTmax deur akklimasie temperature nie (p > 0.82). Veldtemperature is ook bepaal om te vergelyk met graanstinkluis termiese toleransie vlakke wat in die laboratorium bepaal is. Hierdie resultate, sowel as die gevolge van die akklimasie behandelings op die CTmin van graanstinkluise, het implikasies vir na-oes behandelings, en begrip van die kwarantyngevaar wat dit inhou vir vrugte-invoerlande. Die inligting wat uit hierdie studie voortvloei, kan gebruik word om die ontwikkeling van beide effektiewe voor-oes en na-oes beheermaatreëls te bevorder en om die kwarantynrisiko wat graanstinkluise inhou, te verminder.

Dissertation (PhD)--University of Stellenbosch, 2006.
ENGLISH ABSTRACT: The central goal in macroecology is to determine species diversity patterns across ecological gradients. Altitudinal and latitudinal patterns in species richness are often assumed to be analogous. Furthermore, the primary mechanisms underlying richness patterns along these two gradients might be similar. To date, few studies have tested whether the hypotheses proposed to explain latitudinal richness variation apply to patterns across altitude. This study therefore tests several hypotheses proposed to explain patterns in species diversity (i.e. ambient energy, productivity, area and geometric constraints) and their underlying mechanisms using altitudinal gradients in epigaeic ant and beetle species richness in the Greater Cederberg Biodiversity Corridor (GCBC) (Western Cape, South Africa). The study was conducted across an altitudinal gradient that was laid out from sea level to the top of a mountain (approximately 2000 m above sea level) and down the other side thereof. First, it was determined how the ant and beetle assemblages differ between the main vegetation types included in the transect and which environmental variables might underlie these differences. Thereafter, the variation in species richness and range size patterns of the two groups was investigated across the full altitudinal gradient. This is the first study that tests the applicability of two mid-domain models across such an altitudinal gradient using both complete and partial assessments. The models explained large proportions of the variance in range sizes across three domains but the ranges could have been constrained to show peaks in the middle of the domains due to the way in which the boundaries of the domains were selected. By contrast, the mid-domain models were not important in explaining species richness patterns, which suggests that they cannot explain diversity across the gradient. The species richness patterns of the two groups did not show the predicted mid-altitudinal peak. Moreover, it was demonstrated that different processes structure ant and tenebrionid assemblages across the same altitudinal transect. Ant species diversity was highly correlated to contemporary climatic variables, while historical factors appear to play a more important role in structuring tenebrionid beetle assemblages. Furthermore, support was found for the species energy theory in the ant assemblages, as well as for two of its underlying mechanisms, namely the more individuals hypothesis and the niche position mechanism. These results suggest that there are likely to be substantial and complex changes to ant assemblages under the predicted climate change scenarios for the region. Given the crucial role played by this group in ecosystem functioning (e.g. myrmecochory) it is suggested that these responses are not likely to be a response solely to vegetation changes, but might also precipitate vegetation changes. This study also forms the basis of a long-term monitoring programme to establish baseline data for the epigaeic ants and tenebrionids and to monitor changes in these communities due to climate change.
AFRIKAANSE OPSOMMING: Een van die sentrale idees in makro-ekologie is om die patrone in spesies diversiteit oor ekologiese gradiënte te ondersoek. Verder word daar aangeneem dat spesie rykheidspatrone oor hoogte- en breedtegradiënte analoog is aan mekaar en dat die primêre onderliggende meganismes van die patrone dieselfde kan wees oor hierdie twee gradiënte. Tot dusver het min studies getoets of die voorgestelde hipoteses wat breedtegradiënte in spesie rykheid verduidelik van toepassing is op hoogtegradiënte. Hierdie studie toets dus verskeie van hierdie hipoteses (aanvoelbare temperatuur, produktiwiteit, area en geometriese beperkinge) en hulle onderliggende meganismes in mier en kewer spesie rykheid in die Groter Cederberg Biodiversiteits Korridor (GCBK) (Wes Kaap, Suid Afrika). Die studie is uitgevoer oor ‘n hoogtegradiënt wat vanaf see vlak tot ongeveer 2000 meter bo seevlak en weer aan die ander kant van die berg af uitgelê is. Eerstens is daar bepaal hoe die mier en kewer diversiteit verskil tussen die hoof planttipes wat oor die hoogtegradiënt voorgekom het en watter omgewingsveranderlikes daarvoor verantwoordelik is. Daarna is die variasie in spesie rykheid en area van verspreiding van die twee groepe ondersoek oor die hele hoogtegradiënt. Hierdie is die eerste studie wat die toepaslikheid van twee mid-domein modelle oor so ‘n hoogtegradiënt toets met behulp van volledige en gedeeltelike ondersoeke. Die modelle het baie van die variasie in area van verspreiding verduidelik oor drie domeine maar die areas van verspreiding kon beperk gewees het om pieke in die middel van die domeine te vorm as gevolg van die manier waarop die grense van die domeine gekies is. In teenstelling, het die modelle nie spesie rykheid verduidelik nie en dus kan hulle nie spesie diversiteit oor hierdie gradiënt verduidelik nie. Die spesie rykheidspatrone van die twee groepe het nie die verwagte piek by midhoogte gewys nie. Verder het verskillende prosesse mier en kewer groeperings oor die hoogtegradiënt gestruktureer. Mier diversiteit was hoogs gekorroleer met kontemporêre klimaatsveranderlikes, terwyl historiese faktore belangriker was vir die kewers. Die spesie-energie teorie was ondersteun deur die data, asook die meer individue hipotese en die nis posisie meganisme. Hierdie resultaat dui daarop dat daar moontlik komplekse veranderinge in mier groeperings gaan plaasvind soos die klimaat verander. Miere vervul belangrike ekologiese prosesse in ekosisteme, wat beteken dat die laasgenoemde verandering nie bloot net gaan plaasvind as gevolg van veranderinge in die plantegroei nie, maar dat hulle self ook veranderinge kan veroorsaak. Hierdie studie vorm ook die basis van ‘n langtermyn moniteringsprogram om basislyn data vir hierdie twee ekologies belangrike groepe vas te stel en om veranderinge wat in hierdie gemeenskappe plaasvind, as gevolg van klimaatsverandering, te monitor.

Thesis (MSc)--University of Stellenbosch, 2006.
ENGLISH ABSTRACT: The conservation of biodiversity is becoming increasingly challenging as habitats are disturbed, fragmented or destroyed. Although nature reserves now cover more than 10 % of the earths’ surface it has become clear that more will have to be done to ensure the long-term survival of species. Therefore, focus is increasingly shifting towards conserving biodiversity in natural and semi-natural remnants in human-influenced areas. This study aimed to determine the contribution of remnants in human-influenced areas to the conservation of biodiversity in the Cape Floristic Region (CFR) lowlands, using ground-dwelling arthropods, specifically ants, as the focal taxon. Initially, base-line information of arthropods and in particular ants was obtained. Sampling arthropods generally involves a large sample effort. Therefore maximizing sampling effort for ants in the CFR was investigated by trapping ground-dwelling ants at a single locality. Doubling the number of grids of pitfall traps was found to be more effective in trapping a greater number of species than doubling the duration of sampling. Therefore increasing spatial sampling intensity rather than sampling duration maximizes sample effort for CFR ants. Also, the seasonal changes of ground-dwelling arthropods, including ants, were determined by sampling four times during the year at a single locality. Overall arthropod abundance was found to peak in summer while dropping to a minimum in winter. This pattern was mirrored by that of the ants, indicating that ant results have a broader relevance than to ants only. The ground-dwelling fauna was dominated by ants emphasizing their importance in the CFR lowlands, and demonstrating that ants are an appropriate flagship taxon for epigaeic arthropod diversity in the CFR. Finally the contribution of remnants in human-influenced areas to the conservation of the CFR was investigated. A nested hierarchical approach was used, where five localities were selected across the CFR, each containing one reserve site and one site with natural remnants. Ants were sampled, along with environmental variables, namely weather, vegetation and soil. Overall, remnants were found to support similar ant assemblages to those of reserves. However for individual localities some remnants were significantly different to their reserve counterparts. Differences in ant assemblages were found to be greater between localities than between reserves and remnants. The relatively high heterogeneity of ants found in this study emphasizes the conservation significance of invertebrates along with that of plants in the CFR. Remnants clearly show the potential to conserve ant assemblages, however correct management is needed for these areas to maximize their potential. Disturbances such as the presence of the invasive Argentine ant and increasing soil nutrients by fertilization, pose a distinct threat to the ability of remnants to conserve ant assemblages. This study has shown that remnants currently support ant assemblages representative of those present in the CFR today. Therefore, some remnant patches of habitat in agricultural areas currently do contribute highly to the conservation of a functional important taxon in this global biodiversity hotspot, and if managed correctly, may continue to do so in the future.
AFRIKAANSE OPSOMMING: Die vernietiging en fragmentering van habitatte maak die bewaring van biodiversiteit al hoe meer van ‘n uitdaging. Alhoewel natuur reservate reeds meer as 10 % van die aarde se oppervlak beslaan is dit duidelik dat meer gedoen sal moet word vir die lang-termyn voortbestaan van spesies. Dus word die fokus van biodiversiteit-bewaring toenemend gerig op bewaring van natuurlike en semi-natuurlike fragmente in menslik-beinvloede gebiede. Die doel van hierdie studie was om te bepaal wat die bydrae van fragmente van natuurlike veld in menslik-beinvloede gebiede is tot die bewaring van die streek. Dit is gedoen deur van grond-lewende geleedpotiges en spesifiek, miere in die Kaapse floraryk (CFR) gebruik te maak. Aanvanklik is kennis ingewin oor die geleedpotiges en spesifiek miere in die omgewing. Omdat die versameling van geleedpotige diere gewoonlik baie moeite vereis is ‘n maksimum steekproef gedoen by ‘n enkele lokaliteit. Daar is gevind dat ‘n verdubbling van die aantal ruitsteekproefnemings met vanggate meer effektief is om miere te vang as ‘n verdubbling in die tydperiode wat vanggate oop is. Dus, is ‘n hoër ruimtelike steekproef intensiteit meer effektief in vergelyking met ‘n langer tydsduur vir miere in die CFR. Die seisoenale veranderinge van grond-lewende geleedpotiges, sowel as miere, was ook bepaal. Dit was gedoen deur vier seisoenale steekproewe te doen by ‘n enkele lokaliteit. Die totale geleedpotige-talrykheid was die meeste gedurende die somer en die minste in die winter. Die miertalrykheid het ook hierdie patroon weerspieël. Dit dui daarop dat veranderinge in mier versamelings van breër belang is vir alle grondlewende geleedpotiges. Miere was die dominante grond-lewende geleedpotiges en beklemtoon die belangrikheid van miere in die CFR, sowel as hulle toepaslikheid as vlagskip taksa vir grond-lewende geleedpotige diversiteit in die CFR. Laastens was die bydrae van gefragmenteerde natuurlike veld in menslik–beinvloede gebiede tot die bewaring van die CFR ondersoek. ’n Krimpende/ genestelde hiërargies benadering is gebruik in vyf geselekteerde lokaliteite, elk het bestaan uit ‘n area in ‘n natuur reservaat en ‘n area in ‘n naasliggende fragment. Miere was versamel saam met ‘n verskeidenheid omgewings veranderlike, naamlik weer, plantegroei en grond. In die algemeen is gevind dat fragmente en reservate gelyksoortige mier versamelings het. Daar was wel gevind dat party fragmente aansienlik verskillend was van die reservaat teenstuk. Verskille in mier versamelings tussen lokaliteite was groter as verskille tussen reservate en fragmente. Die relatief hoë heterogeniteit van miere beklemtoon die bewaringsbelang van invertebrate saam met dié van plante in die CFR. Dit is duidelik dat fragmente wel ‘n potensiale bydrae kan maak om die mier versamelinge te bewaar, maar gepaste bestuur is nodig om hierdie potentiaal te maksimaliseer. Versteurings soos die teenwoordigheid van die indringer Argentynse mier en toenemende grondvoedingstofkonsentrasie as gevolg van bemesting is ‘n groot bedreiging tot die vermoë van fragmente om mier versamelings te bewaar. Hierdie studie wys dat mier versamelings in gefragmenterde areas verteenwordigend is van die algemene mier versamlings wat op die oomblik in die CFR is. Dus lewer party fragmente in landbou gebiede op die oomblik ‘n wesenlike bydrae tot die bewaring van ‘n funksioneel belangrike takson in hierdie globale biodiversiteitsbrandpunt en die bydra sal volhoubaar wees met korekte bestuur.

Thesis (MSc)--University of Stellenbosch, 2004.
ENGLISH ABSTRACT: West Coast Renosterveld is one of the most threatened vegetation types in South Africa. Less than 5% of the original extent of this vegetation type remains, of which 80% is on private land. In addition to fragmentation, much of the vegetation has been ploughed for crop production and then abandoned and invaded by alien plants. Restoration of transformed areas may improve the conservation status of this vegetation type. Indigenous species do not return to abandoned agricultural fields for decades even if these are adjacent to natural areas since their return is limited either by seed dispersal or seedling establishment. The aim of this study was to examine the recovery of indigenous vegetation on abandoned fields. Renosterveld, as we know it today, is an asteraceous shrubland, dominated mainly by renosterbos (Eytropappus rhinocerotis), but might have been a grassland or a grassland-shrubland mosaic. Historical records indicate that species of large game were common in the Western Cape when the early settlers arrived, but most of these have since disappeared. It is thus impossible to reconstruct exactly the ecological processes and functioning of Renosterveld. The first part of the study was designed to examine the effects of grass competition, grazing by indigenous large herbivores, and interaction of these two factors on the establishment, growth and survival of transplanted Renosterveld seedlings on an abandoned agricultural field. Experimental transplanting of indigenous shrubs into an old field showed that most of the plants investigated competed for resources with lawn grasses on the field, and competition affected the seedlings throughout the experiment. Mortality was higher, and growth was reduced for seedlings exposed to grass competition. With the exception of wild olive (Olea europaea spp.africana), herbivory alone had no significant impact on the target species. Herbivory was at a low intensity (20 ha/large animal unit); higher grazing pressures might have given different results. No interaction between competition and herbivory was found for the species investigated; competition and grazing therefore seem to influence the seedlings independently. The second part of this study was conducted to examine the effects of different management strategies, viz: brush cutting, burning and herbicide application on plant species recruitment and community composition and to ascertain their applicability by farmers for large scale restoration of Renosterveld. My comparison of the different strategies for controlling annual alien grasses indicated that these did not differ significantly in their effects on species richness. Burning reduced shrub cover and increased overall species richness and diversity. Burning also reduced grass biomass, and increased recruitment of indigenous seedlings. The use of herbicide resolved the problem of grass biomass invasion and increased shrub species richness. The herbicide application did not appear to have long-term negative effects on the soil quality. Brush cutting did not remove grass biomass on the old field. Experimental re-seeding with an indigenous grass and shrub species into treated plots resulted in low recruitment. My conclusion is that grass can reduce recruitment and growth of many indigenous shrub species. My recommendation for the restoration of old fields in West Coast Renosterveld is to apply herbicide to remove grass competition, and then, after the herbicide has degraded, to oversow the field with seeds of indigenous shrub and grass species of early successional stages to increase overall species diversity.
AFRIKAANSE OPSOMMING: Weskus Renosterveld is een van die mees bedreigde plantegroei soorte in Suid Afrika. Minder as 5% van die oorspronklike omvang van hierdie plantegroei tipe is oor, en dit hoofsaaklik (80%) op privaatlande. Saam met fragmentasie, is baie Renosterveld areas ook omgeploeg vir boerdery en dan net so gelos, met die gevolg dat uitheemse plante hierdie areas ingedring het. Restorasie of herstelling van sulke bewerkte lande kan dalk die bewaringsstatus van hierdie plantegroei tipe verbeter. Natuurlike vestiging van Renosterveld spesies op sulke ou bewerkte lande gebeur nie, selfs al is daar Renosterveld direk langs so ‘n ou veld. Die hervestiging van inheemse spesies is dus tot saadverspreiding or saailingbevestiging beperk. Die doel van hierdie studie is om die stadige terugkoms van inheemse plantegroei na verlate bewerkte velde te verduidelik. Renosterveld is ‘n struikveld waarin die renosterbos (Eytropappus rhinocerotis) domineer, maar kan ook ‘n grasveld of ‘n grasveld-struikland mengsel wees. Groot herbivore was algemeen in die Wes Kaap toe die eerste settelaars gearriveer het, maar intussen het omtrent al die groot wild spesies verdwyn. Dit is dus ontmoontlik om die ekologiese prosesse en funksionering van Renosterveld presies so te herstel. Die eerste deel van hierdie studie bestudeer die effek van graskompetisie, weiding deur inheemse groot herbivore, en die interaksie tussen hierdie twee faktore op die vestiging, groei en oorlewing van oorgeplante Renosterveld saailinge in ‘n verlate ou veld. Die eksperimentele oorplanting van inheemse struike in ‘n ou land het gewys dat die meeste van hierdie plante kompeteer vir hulpbronne met kweekgras wat op die ou veld groei. Kompetisie het die saailinge deur die hele eksperiment geaffekteer. ‘n Hoër mortaliteit en verminderede groei in saailinge wat aan gras kompetisie blootgestel was, is waargeneem. Met die uitsondering van Olea europaea spp. africana, het herbivorie alleen geen betekenisvolle impak op plant spesies gehad nie. Weidingsdruk was laag (20 ha/groot vee eenheid); ‘n groter weidingsdruk sou miskien ‘n ander uitkoms gehad het. Geen interaksie tussen kompetisie en herbivorie is waargeneem in die bestudeerde plantspesies nie. Dit wil dus voorkom of kompetisie en weiding die saailinge onafhanklik van mekaar beïnvloed. Die tweede deel van hierdie studie was onderneem om die effek van verskillende behandelings (kontrole, sny, brand en herbisied toediening) op plantspesie vestiging en samestelling te bestudeer asook om bestuurmetodes te toets was deur boere op groot skaal gebruik kan word om Renosterveld te herstel. In ‘n vergelyking van verskillende bestuur metodes (kontrole, besnoeiing, brand en herbisied) om eenjarige uitheemse gras te beheer, is gewys dat die behandlings nie betekenisvol van mekaar verskil in hulle effek op spesierykheid nie. Vuur het struikbedekking verminder en totale spesies rykheid en diversitiet verhoog. Die gebruik van ‘n herbisied het die probleem van grasindringing opgelos en het ook struikspesiesrykheid verhoog. Die herbisied het nie lang termyn negatiewe effekte op grond kwaliteit gehad nie. Sny het nie gras biomassa verlaag op die ou land nie. Eksperimentele plant van inheemse grasse en struike in die behandelde areas, het lae vestiging tot gevolg gehad. My algemene afleiding is dus dat gras die hervestinging en groei van baie inheemse struikspesies verminder. Ek stel voor dat herbisied gebruik moet word om gras kompetisie te verminder. Nadat herbisied residue in die grond afgebreek is, moet die ou land met inheemse struik en grasspesies, wat in vroeë suksessie stadiums is, beplant word om sodoende totale spesiediversiteit te verhoog en uiteindelik ou bewerkte lande in Weskus Renosterveld te herstel.

>Magister Scientiae - MSc
Several attempts have been made to assess the impact of post-fire soil erosion; however, erosion occurs as a result of the complex interplay between many factors, such as climate, land cover, soil and topography, making precise estimation difficult. Additionally, these factors are far from constant in space and time, and often interact with one another. To assess the impact of wildfire on soil erosion and factors influencing its variability, the post-fire soil erosion response of two mountainous headwater sub-catchments namely Langrivier and Tierkloof, with different vegetation cover in the Jonkershoek Valley was examined using a systematic approach that combines efforts in field and laboratory work, spatial analysis and process-based numerical modelling. Geospatial modelling shows high spatial variability in erosion risk, with 56 % to 67 % of surfaces being highly susceptible excluding rock cover. The model highlights the importance of terrain and vegetation indices, with predicted erosion being more severe on steep slopes with lower vegetation cover.
2021-08-30

Thesis (PhDEng)--University of Stellenbosch, 2002.
ENGLISH ABSTRACT: The interaction between moving water and the physical attributes of a river, as displayed by the channel morphology, determines the availability of physical habitat for aquatic species and thus also the condition of the ecosystem. As such, the environmental flow assessment process requires knowledge on how changes in the flow regime will affect both the morphological and hydraulic conditions within a river channel. With the increasing development of water-related infrastructure in mountain regions, knowledge of the morphological and hydraulic characteristics of rivers in the upper catchment areas is very important. Cobble and boulder bed rivers in the Western Cape are typical examples. They are characterized by steep gradients, great variability in sediment size and relatively low flow depths. The bed configuration contains a series of pools, steps, rapids, riffles and plane beds, while energy losses are high as a result of turbulence and hydraulic jumps. Due to their wideranging morphological and associated hydraulic attributes, the physical habitats within these rivers are extremely diverse, both on a spatial and temporal scale. This study addresses the interaction between moving water and the physical attributes of cobble and boulder bed rivers. Empirical, semi-empirical and theoretically based models are developed which define the hydraulic and morphological related characteristics of environmental flow components in cobble and boulder bed rivers. They cover macro scale channel deformation, the scouring of sand from the interstitial spaces between the cobbles as well as velocity-depth relationships, which prove to be key components in the assessment of environmental flow requirements in cobble and boulder bed rivers.
AFRIKAANSE OPSOMMING: Die wisselwerking tussen die vloeiende water en die fisiese eienskappe van 'n rivier, soos beskryf deur die morfologie, bepaal die beskikbaarheid van habitat vir akwatiese spesies en gevolglik ook die welstand van die ekosisteem. Kennis omtrent die impak van 'n veranderde vloei regime op beide die morfologiese en die hidrouliese toestande in 'n rivierloop is dus nodig vir die bepaling van omgewingsvloeibehoeftes. Met die toenemende ontwikkeling van water-verwante infrastruktuur in bergagtige gebiede is 'n grondige kennis van die morfologiese en hidrouliese eienskappe van riviere in hierdie bo-opvanggebiede gebiededend noodsaaklik. Spoelklip riviere in die Wes-Kaap is tipiese voorbeelde van sulke riviere. Hierdie riviere word gekenmerk deur steil hellings, 'n wye verskeidenheid sedimentgroottes, relatiewe lae vloeidieptes en hoë energieverliese as gevolg van turbulensie. Verder bevat die ri vierbed afwisselend poele en stroomversnellings en gevolglik word 'n wye verskeidenheid habitat tipes in hierdie riviere aangetref. Hierdie studie fokus op die interaksie tussen bewegende water en die fisiese eienskappe van spoelklip riviere. Met behulp van empiriese, semi-empiriese en teoretiese modelle word die morfologiese en hidrouliese eienskappe van omgewingsvloeibehoeftes in spoelklip riviere aangespreek. Dit sluit makroskaal kanaal vervorming, die uitskuur van sand tusen die spoelklippe asook die verwantskap tussen vloeisnelheid en vloeidiepte in. Hierdie aspekte kan beskou word as van die sleutel elemente vir die bepaling van omgewingsvloeibehoeftes in spoelklip riviere.

Thesis (MScConsEcol (Conservation Ecology and Entomology))--Stellenbosch University, 2008.
In the Mediterranean climate regions of the world, agricultural practices have caused considerable landscape transformation and lead to introduction of alien species that now dominate secondary succession on abandoned agricultural fields. Various restoration attempts have been made to reduce alien plant species cover, and to enhance the re-establishment and cover of native plant species. However, results and successes were mostly short-term due to re-growth and persistence of the weedy alien species, which has been suggested to be caused by land use history, especially the nutrient enrichment of soil, and particularly phosphorus and nitrogen. This study investigated different soil properties (pH, electrical conductivity (EC), soil moisture, as well as available phosphorus (P) and total nitrogen (N)) on 10 and 20 year old abandoned fields, as a function of depth in three habitats (ridge (old cultivated area), ditch (old drainage line) and slope (intermediate zone between ridge and ditch)) on the old fields. The relationship between these soil properties and the vegetation occurring on the two old fields was established. At the same time, restoration treatments (autumn burn, combination of autumn burn and herbicide, herbicide application alone, as well as spring burn) were conducted to reduce the cover and abundance of non-native plant species and Cynodon dactylon, and to enhance cover of native species. Results from the study show that levels of all investigated soil properties were higher on the younger field. The highest difference was observed in EC and pH. Seasonal differences in both soil properties could also be observed. A principal component analysis indicated that the dynamic of all soil properties shaped the vegetation type on old fields, with the main soil properties being dependent on land-use history and time since abandonment. This study suggests that EC and pH could be part of parameters that drive the persistence of undesirable species persistence on old fields and inhibit native plant species instead.

>Magister Scientiae - MSc
Urbanisation and storm water input in the Kuils River catchment changed the flow of the river from ephemeral to perennial. This led to flooding problems in the Kuilsrivier central business district. The river was channelised in 2000 to increase the carrying capacity of the channel and thus to reduce the flood risk. This study aims to monitor the impacts of channelisation on the geomorphology and ecology of the Kuils River. This was done by selecting representative study sites upstream, within and downstream of the channelised reach. The geomorphological and ecological characteristics of the river were recorded in detail with changes tracked over a year period incorporating channelisation activities and winter floods.

Thesis (PhD (Conservation Ecology and Entomology))--University of Stellenbosch, 2011.
ENGLISH ABSTRACT: Water storage in reservoirs forms an integral part of the agricultural landscape in the Western Cape Province, South Africa. A few large reservoirs serve primarily as a drinking and industrial water supply, while on private farms, small reservoirs provide irrigation water for the dry summer period. Protection of water quality to secure irrigation and drinking water quality, and the extension of water use efficiency are priority issues in the Western Cape. In the current study, the suitability of rainbow trout (Oncorhynchus mykiss) cage farming as a non-abstractive water use was investigated. The current study concentrated on the identification, and where possible quantification of aquaculture impacts, the identification of successful sites and a description of requirements in which net-cage aquaculture has none or a very low negative impact on water quality (e.g. <15 % change from previous water quality conditions for phosphorus concentrations). In order to study the effects of 5 t trout cage production units in reservoirs <15 ha in area, the general ecology of the irrigation reservoirs was assessed. Sixteen reservoirs without aquaculture production (reference reservoirs) were compared to 26 reservoirs with aquaculture production (production sites with varying production histories). Catchment characteristics were also monitored. Water from different depths (0 m, 2 m, 6 m and near bottom) was tested for physical and chemical qualities as well as nutrient concentrations. Phytoplankton and zooplankton biomass and species composition was monitored. In addition to the general phytoplankton findings, cyanophytes were evaluated for their contribution to algal taint problems that emerged at a number of production sites. Sediments were tested for total phosphorus content and phosphorus release capacity. Indicators and minimum conditions to avoid the most common production problems were formulated. In order to determine long-term production success, which prevents trophic level changes of reservoirs, a mass balance approach (nutrient budget) was employed to indicate the limits for nutrients that can be added. The phosphorus balance indicated long term trends for reservoirs with and without aquaculture. The detailed mass balance approach was compared to a “ready to use” carrying capacity model that estimated the maximum fish load each reservoir could support. The anthropological input of phosphorus into the reservoirs causes a decreasing water quality in the studied reservoirs and this development was also reported for lowland rivers. Twenty percent of the studied reservoirs are in a condition that could be an immediate threat to fish or water bird health (e.g. free ammonia concentrations and pH). Harmful algal blooms were not observed. Aquaculture production evoked changes in water chemistry and ecology in most of the studied reservoirs. Adverse effects of aquaculture sites versus non-aquaculture sites were: increased phytoplankton biomass and species shifts towards sizes >80 μm. The increased phytoplankton abundance influenced pH maxima to values >9 at mid-day. The high pH fluctuations were greatly influenced by the naturally low alkalinity and hence low calcium buffering capacity of Western Cape waters. The deoxygenation of the hypolimnion during stagnation (summer) occurred faster in reservoirs of certain character, greatly dependent on elevation and surface area, with consequent acidification of the hypolimnion, as well as ammonia and total phosphorus (TP) accumulation. In this context, a diversity of each reservoir with and without aquaculture production, with a similar ratio of undisturbed reservoirs to reservoirs with influence of e.g. agriculture, were compared to each other. When grouping the respective differences from the average reference reservoir (i.e. no trout production), a low impact on water quality was manifested at four sites (15 %) with <15 % increase of bottom TP and ammonia, while eight sites (31 %) showed medium effects (59 % mean increase), and a high impact was found at 54 % of the sites (312 % mean increase). In reservoirs without aquaculture, the extent of incoming phosphorus (which could represent an influence by runoff from agricultural land) was very high. However, in small reservoirs (<5 ha), these values were exceeded by the incoming phosphorus from aquaculture practices. In the case of small reservoirs where the carrying capacity was clearly surpassed, effects caused by aquaculture were severe and the assimilation of waste by the system was not possible (in extreme cases aquaculture waste delivered 60 to 90 % of all incoming phosphorus – two to nine times the phosphorus brought in by rivers and runoff). With regards to sediment, only indirect conclusions could be drawn. Aquaculture production increased hypolimnetic anoxia and the latter was shown to increase potential phosphorus release from sediments. This implies that not only will aquaculture increase the phosphorus concentration of surface waters directly, but it will also increase internal loading. The sedimentation rate was increased with cage aquaculture which affects a hypothesized area of approximately 0.2 to 1.0 ha depending on reservoir hydrology. The composition of the sediment increased organic components which can impact on sediment processes. It can be postulated that increased sedimentation of aquaculture waste and extended anoxic conditions impact on macrozoobenthos. Hydrological and nutrient mass exchange of the reservoirs indicated that no annual increase of phosphorus was achieved with low nutrient input (good inflowing water quality) or good water exchange (>5 times per year), and sometimes with extraction of hypolimnetic water during the stagnation period (summer). A model developed by Beveridge (1984) showed similar results to the mass balance approach and can therefore serve as a more ready model to determine suitable stocking rates. The small (man-made) reservoirs in the Western Cape are in a eutrophication process which far exceeds the speed of natural eutrophication (trophic states indicating highly eutrophic or hypertrophic conditions after approximately 10 to 20 years following construction of the reservoirs) and this process is triggered by agricultural practice (indicated by literature – not a subject of this study). However, it is concluded from the data of this study that trout-cage aquaculture duplicated the total phosphorus already present (independent of continuation of the projects, the phosphorus introduced was trapped in the closed systems the reservoirs represent) in only 1 to 2 years of production - which means a significant acceleration of the eutrophication process already in place. There are positive exceptions where trout-cage production is possible without negative effects. Careful site selection is the most important step in successful and sustainable trout production. No impact of aquaculture was recorded at four reservoirs (15 % of the investigated reservoirs) which shared the characteristics of good water exchange (>3 times per year) and a minimum surface area of 5 ha. Additionally, criteria that reduced the risk of algal taint included a minimum water depth of 6 to 7 m in a reservoir at its lowest water point (to avoid intermediate mixing during the stagnation period) as well as cold hypolimnetic conditions (<17 °C) to minimize cyanophyte cyst remobilization. Further improvement of food conversion ratio (feeding management) and feed quality are the next (after site selection) two most important components that determine if a reservoir can be utilised for cage production without any long-term changes. There is potential in advances in feed quality, feed management and waste collection systems. These measures (e.g. the cage size could be decreased to efficate feeding management) can increase the number of sustainable sites and achieve multiplication of water use without water quality deterioration.
AFRIKAANSE OPSOMMING: Die stoor van water in reservoirs vorm ‘n integrale deel van die landboulandskap in die Westelike Kaap gedeelte van Suid-Afrika. ‘n Aantal groter reservoirs voorsien primêr water primer vir drinkdoeleindes en vir aanwending deur industrieë, terwyl kleiner reservoirs op private plase gebruik word vir besproeiing gedurende die droë somerperiode. Die beskerming van die waterkwaliteit en die uitbreiding van watergebruik se doeltreffendheid, word bestempel as ‘n prioriteit vir die Wes-Kaap. In die huidige studie is die geskiktheid van forel hokkultuur as ‘n bykomende watergebruik, maar sonder waterverbruik, ondersoek. Die huidige studie fokus op die identifisering en waar moontlik die kwantifisering van die impak van akwakultuur op besproeiingsreservoirs; die identifisering van potensiële reservoirs vir akwakultuur; en die beskrywing van toestande waarin akwakultuur geen of ‘n baie lae negatiewe uitwerking op die waterkwaliteit (bv. < 15 % verandering vanaf oorspronklike waterkwaliteitstoestande vir fosforkonsentrasies) sal hê. Om die impak van 5 t forel hokproduksie eenhede in <15 ha reservoirs te bestudeer, is die algemene ekologie van die besproeiingsreservoirs bepaal. Watermonsters, geneem op verskillende dieptes (0, 2, 6 en naby die bodem), is getoets vir fisiese- en chemiese kwaliteit sowel as vir die nutriëntkonsentrasies. Die biomassa en spesiesamestelling van fitoplankton sowel as zooplankton is gemonitor. Sestien verwysingsreservoirs is vergelyk met 26 produksiereservoirs (met wisselende vlakke van produksiegeskiedenis). Die karakeristieke eienskappe van die opvangsgebied is ook gemonitor. Tesame met die algemene fitoplankton bevindinge, is blougroen alge ook geëvalueer vir hul bydrae tot algae besmettingsprobleme wat voorgekom het by ‘n aantal produksie persele. Sedimente is getoets vir die totale fosforinhoud en fosforvrystellingskapasiteit. Perseelseleksie is geidentifiseer as een van die mees belangrikste faktore vir suksesvolle hokproduksie. Indikatore en minimum toetstande wat vereis word om die mees algemene produksieprobleme te verhoed, is geformuleer. Om die langtermyn produksie sukses te bepaal, wat trophiese vlakke se verandering in die reservoirs verhoed, is ‘n massa balans benadering (nutriënt balans) gebruik. Die fosfor balans het langtermyn tendense aangetoon en in die geval van die produksie reservoirs, is die akwakultuurimpak gekwantifiseer. Die gedetaileerde massa balans benadering is vergelyk met ‘n “gereed om te gebruik” drakapasiteitsmodel wat die maksimum vis wat die reservoir kan onderhou, geskat het. Die antropogeniese toevoer van fosfor na die reservoirs veroorsaak ‘n afname in die waterkwaliteit van die reservoirs wat bestudeer is. Die verskynsel van ‘n afname in waterkwaliteit is ook vir verskeie laagliggende riviere geraporteer. Sowat 20 % van die besproeiingsreservoirs wat bestudeer is, is tans in ‘n toestand wat die onmiddelike gesondheid van vis en watervoëls kan bedreig. Skadelike algebbloei is nie waargeneem nie. Akwakultuurproduksie het negatiewe effekte getoon in ‘n aantal reservoirs. Die nadelige uitwerking van akwakultuur waar digthede te hoog was, is: toename in fitoplankton biomassa en spesiesverskuiwinge. Die toename in fitoplankton teenwoordigheid het die pH maxima beïnvloed tot waardes >9 teen 12 uur middag. Die hoë pH fluktuasies is grootliks beïnvloed deur die natuurlike lae alkaliniteit en gevolglike kalsium bufferkapasitiet van die Wes-Kaap se waterbronne. Die deoksiginasie van die hipolimnion gedurende stagnasie (somer) het vinniger plaasgevind in oorbelaaide reservoirs, met gevolglik ‘n versuring van die hipolymnion, sowel as die akkumelering van ammoniak en totale fosfor. In hierdie konteks word reservoirs met en sonder landbouproduksie, met ‘n gelyke verhouding van onversteurde reservoirs tot reservoirs wat deur landboubedrywighede beinvloed word, met mekaar vergelyk. By vier persele (15 %) is ‘n lae impak vasgestel (<15 % toename in bodem TF en ammoniak), terwyl agt persele (31 %) ‘n medium impak getoon het (59 % gemiddelde toename in bodem TF en ammoniak) en ‘n hoë impak is opgemerk by 54 % van die persele (31 % gemiddelde toename in bodem TF en ammoniak). In reservoirs sonder akwakultuur, was die omvang van fosforinvloeiing baie hoog en is moontlik veroorsaak deur die invloei van afloopwater uit omliggende landbougebiede. Alhoewel in klein reservoirs (<5 ha) was hierdie waardes oorskadu deur die invloeiing van fosfor deur akwakultuur praktyke.In die geval van klein reservoirs, waar die drakrag duidelik oorskry is, was die gevolge, soos veroorsaak deur akwakultuur ernstig, en die assimilasie van afval deur die sisteem nie moontlik nie. In die uiterste gevalle het akwakultuurafval 60 % - 90 % van alle inkomende fosfor gelewer - twee tot nege maal die fosfor wat deur riviere en afloopwater ingevloei het. Wat die sediment aanbetref, kon slegs indirekte gevolgtrekkings gevorm word. Akwakultuurproduksie het hipolimnetiese anoksia laat toeneem en die laasgenoemde verskynsel, het die potensiaal aangedui vir die toename in die vrystelling van fosfor vanaf die sediment. Dit dui daarop dat akwakultuur nie alleen die fosforkonsentrasie in die oppervlaktwater laat toeneem nie, maar sou ook die interne belading laat kon toeneem. Die sedimentasie tempo het toegeneem met die teenwoordigkeid hokkultuur en het ‘n hipotetiese area van ongeveer 0.05 tot 1.00 ha, afhangende van reservoir hidrologie, beïnvloed. Die samestelling van die sediment het toegeneem in teme van die organiese komponente wat die sedimentasie prosesse kon beïnvloed. Dit kan gepostuleer word dat die toename in sedimentasie van akwakultuurafvalprodukte tesame met verlengde anoksiese toestande, ‘n invloed op die makrosoöbentiese organismes het. Hidrologiese en nutriënt massa uitruiling van die reservoirs het aangetoon dat geen jaarlikse toename in fosfor verkry kan word met lae nutrient toelae (kwaliteit van invloeiende water) of met goeie waterverplasing nie, en soms met die ekstraksie van hipoliminetiese water gedurende die stagnasie periode (somer). Die Beveridge model het soortgelyke resultate getoon tot die massabalans benadering en kan daarom dien as ‘n meer aanvaarbare model om gepaste beladingstempo vas te stel. Kleiner mensgemaakte reservoirs in die Wes-Kaap is onderhewig aan ‘n eutrofikasie proses wat die spoed van natuurlike eutrofikasie (trofies verwys na ‘n hoogs eutrofiese of hipertrofiese toestand ongeveer 10 tot 20 jaar na reservoir konstruksie) oorskry. Literatuur (nie ondersoek in die huidige studie) dui aan dat hierdie versnelde eutrofikasie proses meegebring word deur landbouaktiwiteite in die opvangsarea van die reservoirs. Resultate van die huidige studie het getoon dat forelproduksie in hokstelsels, die konsentrasie van total fosfor wat reeds beskikbaar was, verdubbel het. Die toename in fosforkonsentrasie het binne 1 tot 2 jaar na die aanvang van forelproduksie in die betrokke reservoirs, plaasgevind. Daar is egter uitsonderings waar forelproduksie in hokstelsels moontlik was, sonder die gepaardgaande afname in die waterkwaliteit. Die belangrikste stap vir suksesvolle en volhoubare forelproduksie is deeglike perseelseleksie. Daar is geen impak van akwakultuur waargeneem by vier persele (15 %) wat die eienskappe van goeie waterverplasing (>3 keer per jaar) en ‘n minimum oppervlakarea van 5 ha gehad het nie. Bykomend, sluit kriteria wat die risiko van algbesmetting laat afneem, ‘n minimum waterdiepte van 6 tot 7 m in ‘n reservoir by die laagste punt in (om te verhoed dat intermediêre vermenging plaasvind gedurende die stagnasieperiode) sowel as koue hipolimnetiese toestande (<17 °C) om sianobakterieë sist remobilisasie te minimaliseer. Verdere verbetering van die VOH (voeromsettingsverhouding onder voedingsbestuur) en voerkwaliteit is na perseeleleksie, die volgende komponente wat kan aandui of ‘n perseel gebruik kan word vir hokkultuur sonder enige impak. Vordering met voerkwaliteit en voedingsbestuur kan die aantal volhoubare persele laat toeneem en daardeur meer effektiewe watergebruik teweeg bring, sonder die verwante waterkwaliteit verswakking.

Thesis (PhD)--Stellenbosch University, 2011.
ENGLISH ABSTRACT: Both taxonomic diversity and diversity of species interaction networks are experiencing declines as a result of agricultural intensification at habitat and landscape scales. Reversing this trend is a key conservation issue, particularly for important functional groups such as flower-visiting insects and the networks within which they interact. This is of great concern in regions of high conservation priority such as the Cape Floristic Region (CFR), known for its high level of floral and faunal endemism and exceptional species turnover. Holistic approach to conservation in agricultural landscapes involves both preservation of natural land and wildlife friendly management of the farm land to achieve conservation targets. The value of these extensive management approaches is yet to be fully assessed, especially in perennial systems such as vineyards. I examined here the effects of vineyard management and landscape context on species richness and abundance of flower-visiting insects and their species interaction networks. Possible taxon specific effects were verified. I also investigated whether vineyards under organic and conventional management homogenized insect-flower interaction networks and whether vineyards with different management practices vary in patterns of species turnover. I sampled flower-visiting insects and their interactions in organic and conventional vineyards, and in natural reference sites. Inclusion of natural reference sites enabled me to make management recommendations for patches of natural vegetation in CFR agricultural landscape. Statistical models showed taxon-specific benefit of organic farm management, and of landscape (distance to natural habitat). There was benefit to monkey beetles (Scarabaeidae) but not to bees (Apidae). Organic vineyards had a higher number of insect-flower interactions than conventional ones, but vineyards under the two types of management were similar in terms of other important network indices. However, networks of the vineyards were more nested than the natural sites, indicating that they may be potentially more stable to perturbation and random extinctions. Multivariate dispersion tests revealed insect-flower interaction networks were not homogenized by both organic and conventional vineyards across the landscapes. I also found, through additive partitioning, that organic and conventional vineyards were similar in terms of species turnover of bees and flowering plants. The findings of this study provide heuristic value to current debates on the value of vineyard habitats for insect conservation. Both organic and conventional vineyards that promote sustainable management of the non-crop floral vegetation between vineyard rows are potential solutions for conservation of flower-visiting insects and their interactions. Also, attention has to be paid to the quality and connectivity of the natural habitat patches that are within CFR agricultural landscape. Site specific management and assessment of the value of these landscape elements is important. Management approaches such as carefully controlled burning may be beneficial, as the CFR natural vegetation is a fire-driven community.
AFRIKAANSE OPSOMMING: Taksonomiese diversiteit en diversiteit van spesies-interaksie netwerke ondervind beide afnames as gevolg van landboukundige intensifikasie op habitat en landskap skaal. Om die neiging terug te swaai, is ’n sleutel bewaringsaangeleentheid, veral vir belangrike funksionele groepe soos blom-besoekende insekte en die netwerke waarbinne hulle op mekaar inwerk. Dit is van groot kommer in streke met hoë bewaringsprioriteite soos in die Kaapse Floristiese Streek (KFS), bekend vir sy hoë vlak van plant- en dierendemisme en buitengewone spesies kentering. ’n Holistiese benadering tot bewaring van landboukundige landskappe behels beide die bewaring van natuurlike land en natuurlewe-vriendelike bestuur van die plaasgrond om bewaringsdoelwitte te bereik. Die waarde van hierdie ekstensiewe bestuursbenaderings moet nog volledig bepaal word, veral in meerjarige sisteme soos wingerde. Ek het die uitwerkings van wingerdbestuur en landskapsamehang op spesiesrykheid en volopheid van blombesoekende insekte en hulle spesies interaksie netwerke ondersoek. Moontlike takson-spesifieke uitwerkings is nagegaan. Ek het ook ondersoek ingestel of wingerde onder organiese en gebruiklike bestuur ooreenstemmende insek-blom interaksie netwerke met wingerde met verskillende bestuurspraktyke in patroon van spesies kentering gewissel het. Ek het blom-besoekende insekte en hulle interaksies in organiese en konvensionele wingerde, asook in natuurlike verwysingsgebiede gemonster. Insluiting van natuurlike verwysingsgebiede het my in staat gestel om bestuursvoorstelle vir gebiede van natuurlike plantegroei in KFS landboulandskappe voor te stel. Statistiese modelle toon takson-spesifieke voordeel van organiese plaasbestuur en van die landskap (afstand van natuurlike habitat) self. Daar was voordeel vir bobbejaankewers (Scarabaeidae), maar nie vir bye (Apidae) nie. Organiese wingerde het ’n groter getal insek-blom interaksies as konvensionele wingerde gehad, maar wingerde onder beide tipes van bestuur was soortgelyk in terme van ander belangrike netwerk aanduiders. Netwerke van wingerde was egter meer geklomp dan natuurlike gebiede wat aandui dat hulle potensieel meer stabiel betreffende versteuring en lukrake uitsterwings is. Multivariate verspreidingstoetse het aangetoon dat insek-blom interaksie netwerke by beide organiese en konvensionele wingerde oor landskappe nie eenvormig was nie. Ek het ook bevind deur aanvullende verdeling dat organiese en konvensionele wingerde gelykwaardig was in terme van spesies kentering van bye en blomplante. Die bevindings van hierdie studie verskaf heuristise waarde tot huidige debatte oor die waarde van wingerdhabitatte vir insekbewaring. Beide organies en konvensionele wingerde wat volhoubare bestuur van die nie-gewas plantegroei binne wingerdrye bevorder, is moontlike oplossings vir die bewaring van blom-besoekende insekte en hulle wisselwerkings. Bykomend moet aandag gegee word aan die kwaliteit en verbindings van en tussen natuurlike habitat gebiede binne die KFS landboulandskap. Plekspesifieke (plaaslike) bestuur en bepaling van die waarde van hierdie landskapelemente is belangrik. Bestuursbenaderings, soos noukeurig beheerde brand, mag voordelig wees aangesien die KFS natuurlike plantegroei ’n vuurgedrewe gemeenskap is.

Thesis (MScConsEcol (Conservation Ecology and Entomology))--University of Stellenbosch, 2009.
Habitat loss and fragmentation are two of the most pressing threats to biodiversity. Avifaunal diversity and integrity is under immense pressure from these two processes. We have made major advances in our understanding of avifaunal responses to habitat fragmentation, but mostly focus on either fragment scale and/or landscape scale influences of fragmentation on birds. A more comprehensive approach to assessing the impacts of fragmentation was used in this study. The avifaunas of two different geographical regions and bioregions were surveyed and a multiscale analysis of avifaunal responses to fragmentation was attempted. The study sites include the West Coast and East Coast Renosterveld Bioregions in the Cape Floristic Region, South Africa. Assemblage shifts, feeding guild compositional changes, species abundance variation and species persistence were examined at the three spatial scales. Time- and distance-restricted point counts were used to document birds that were directly dependent on the habitat fragments. Forty fragments were selected in each bioregion and a once-off snapshot of the avifaunal richness and diversity was obtained. Results indicate that the avifauna of the two bioregions responded differently to habitat fragmentation. In the East Coast Renosterveld Bioregion, the assemblages, guild composition and species abundances were most accurately predicted by landscape configuration. An assemblage shift occurred at 20 ha fragment area, compared to the 50 ha fragment area threshold of the West Coast Renosterveld Bioregion’s avifauna composition. In the West Coast Renosterveld Bioregion, fragment area was the better predictor of assemblage, guild composition and species abundances. However in both bioregions, the persistence of common species was equally sensitive to area and landscape scale effects.