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Journal articles on the topic 'Genealogical concordance'

Author: Grafiati

Published: 2 June 2025

Last updated: 31 July 2025

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1

Venter, Stephanus N., Marike Palmer, Chrizelle W. Beukes, et al. "Practically delineating bacterial species with genealogical concordance." Antonie van Leeuwenhoek 110, no. 10 (2017): 1311–25. http://dx.doi.org/10.1007/s10482-017-0869-8.

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2

Walker, M. L. "Genealogical Concordance and the Specific Status of Peromyscus sejugis." Journal of Heredity 97, no. 4 (2006): 340–45. http://dx.doi.org/10.1093/jhered/esl007.

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3

Atchley, W. R., S. Newman, and D. E. Cowley. "Genetic divergence in mandible form in relation to molecular divergence in inbred mouse strains." Genetics 120, no. 1 (1988): 239–53. http://dx.doi.org/10.1093/genetics/120.1.239.

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Abstract Genetic divergence in the form of the mandible is examined in ten inbred strains of mice. Several univariate and multivariate genetic distance estimates are given for the morphological data and these estimates are compared to measures of genealogical and molecular divergence. Highly significant divergence occurs among the ten strains in all 11 mandible traits considered individually and simultaneously. Genealogical relationship among strains is highly correlated with genetic divergence in single locus molecular traits. However, the concordance between genealogical relationship and mul

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4

Hilário, Sandra, Micael F. M. Gonçalves, and Artur Alves. "Using Genealogical Concordance and Coalescent-Based Species Delimitation to Assess Species Boundaries in the Diaporthe eres Complex." Journal of Fungi 7, no. 7 (2021): 507. http://dx.doi.org/10.3390/jof7070507.

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DNA sequence analysis has been of the utmost importance to delimit species boundaries in the genus Diaporthe. However, the common practice of combining multiple genes, without applying the genealogical concordance criterion has complicated the robust delimitation of species, given that phylogenetic incongruence between loci has been disregarded. Despite the several attempts to delineate the species boundaries in the D. eres complex, the phylogenetic limits within this complex remain unclear. In order to bridge this gap, we employed the Genealogical Phylogenetic Species Recognition principle (G

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5

Laurence, Matthew H., Brett A. Summerell, Lester W. Burgess, and Edward C. Y. Liew. "Genealogical concordance phylogenetic species recognition in the Fusarium oxysporum species complex." Fungal Biology 118, no. 4 (2014): 374–84. http://dx.doi.org/10.1016/j.funbio.2014.02.002.

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6

Minh, Bui Quang, Matthew W. Hahn, and Robert Lanfear. "New Methods to Calculate Concordance Factors for Phylogenomic Datasets." Molecular Biology and Evolution 37, no. 9 (2020): 2727–33. http://dx.doi.org/10.1093/molbev/msaa106.

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Abstract We implement two measures for quantifying genealogical concordance in phylogenomic data sets: the gene concordance factor (gCF) and the novel site concordance factor (sCF). For every branch of a reference tree, gCF is defined as the percentage of “decisive” gene trees containing that branch. This measure is already in wide usage, but here we introduce a package that calculates it while accounting for variable taxon coverage among gene trees. sCF is a new measure defined as the percentage of decisive sites supporting a branch in the reference tree. gCF and sCF complement classical meas

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7

Peterson, Stephen W., and Željko Jurjević. "Talaromyces columbinus sp. nov., and Genealogical Concordance Analysis in Talaromyces Clade 2a." PLoS ONE 8, no. 10 (2013): e78084. http://dx.doi.org/10.1371/journal.pone.0078084.

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8

Gollmann, Günter. "Species concepts: a contrast of viewpoints." Amphibia-Reptilia 17, no. 4 (1996): 295–301. http://dx.doi.org/10.1163/156853896x00018.

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AbstractSome fundamental contrasts underlying the disputes about species concepts are outlined: nominalistic versus essentialistic viewpoints, relations of pattern and process, and incongruities of population genetic, ecological, and phylogenetic approaches. The biological, evolutionary and phylogenetic species concepts are briefly characterized. Attention is drawn to the cohesion concept of species and to genealogical concordance principles, which attempt to integrate elements of those concepts with advances in population biological and evolutionary genetic theory.

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Maniatsi, Stefania, Ilias Kappas, Athanasios Baxevanis, Theodora Farmaki, and Theodore Abatzopoulos. "Sharp Phylogeographic Breaks and Patterns of Genealogical Concordance in the Brine Shrimp Artemia franciscana." International Journal of Molecular Sciences 10, no. 12 (2009): 5455–70. http://dx.doi.org/10.3390/ijms10125455.

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10

Sarver, Brice A. J., Todd J. Ward, Liane R. Gale, et al. "Novel Fusarium head blight pathogens from Nepal and Louisiana revealed by multilocus genealogical concordance." Fungal Genetics and Biology 48, no. 12 (2011): 1096–107. http://dx.doi.org/10.1016/j.fgb.2011.09.002.

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11

SAMARAKOON, MILAN C., YUSUFJON GAFFOROV, NINGGUO LIU, et al. "Combined multi-gene backbone tree for the genus Coniochaeta with two new species from Uzbekistan." Phytotaxa 336, no. 1 (2018): 43. http://dx.doi.org/10.11646/phytotaxa.336.1.3.

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The genus Coniochaeta is an important ascomycete because its members live in diversified habitats and nutritional modes. In this study, two new species, C. acaciae and C. coluteae, are introduced from dead branches of Acacia sp. and Colutea paulsenii Freyn (both Fabaceae) respectively from Uzbekistan, based on morphological and phylogenetic studies. Analyses of combined ITS and LSU sequence data with Genealogical Concordance Phylogenetic Species Recognition (GCPSR) and comparison of similar taxa, provide evidences for placement of these new species in Coniochaeta, as distinct lineages.

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12

TIAN, XINGGUO, SAMANTHA C. KARUNARATHNA, AUSANA MAPOOK, et al. "Koorchaloma oryzae sp. nov. (Stachybotryaceae, Sordariomycetes), from Oryza sativa (Poaceae) in northern Thailand." Phytotaxa 524, no. 4 (2021): 283–92. http://dx.doi.org/10.11646/phytotaxa.524.4.4.

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A new species of Koorchaloma is described based on morphology and multigene phylogenetic analyses of ITS, LSU and RPB2. Phylogenetic analyses showed our strain clusters with K. europaea with moderate statistical support. Koorchaloma oryzae sp. nov. is morphologically similar to K. europaea, but it can be distinguished by the conidiophores and conidia, while ITS pairwise nucleotide comparison of these two species also revealed differences. Koorchaloma oryzae is compared with all known Koorchaloma species, and a key to Koorchaloma species is provided. Genealogical concordance phylogenetic specie

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13

Quan, Yu, Xin Zhou, Ricardo Belmonte-Lopes, et al. "Potential predictive value of phylogenetic novelties in clinical fungi, illustrated by Histoplasma." IMA Fungus 16, no. () (2025): e145658. https://doi.org/10.3897/imafungus.16.145658.

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The phylogeny of the vertebrate pathogen <i>Histoplasma capsulatum</i> and its varieties was analyzed on the basis of GenBank data, comparing preceding papers that distinguished lineages on the basis of a much smaller dataset, partly dating back two decades. The aim was to establish the predictive value of individual research papers on biodiversity, which eventually may lead to altered nomenclature with large clinical consequences. A total of 1985 sequences of ITS, ARF, OLE and H-anti were downloaded. ITS showed insufficient resolution, and the sequences of the H-anti gene were too short to pr

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14

Douglas, Michael E., Marlis R. Douglas, Gordon W. Schuett, Louis W. Porras, and Blake L. Thomason. "Genealogical Concordance between Mitochondrial and Nuclear DNAs Supports Species Recognition of the Panamint Rattlesnake (Crotalus mitchellii stephensi)." Copeia 2007, no. 4 (2007): 920–32. http://dx.doi.org/10.1643/0045-8511(2007)7[920:gcbman]2.0.co;2.

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15

Zhang, Xian, Saowaluck Tibpromma, Samantha C. Karunarathna, et al. "Additions to the saprobic fungi (Ascomycota) associated with macadamia trees from the Greater Mekong Subregion." MycoKeys 113 (January 24, 2025): 1–29. https://doi.org/10.3897/mycokeys.113.140031.

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Macadamia trees, the most economically important Proteaceae perennial crop, are globally renowned for their edible nuts. During our surveys of microfungi associated with macadamia in China and Thailand, we isolated three saprobic fungi from dead macadamia branches. Our multigene phylogenetic analyses (ITS, LSU, SSU, tef1-α, TUB2, and ACT loci), genealogical concordance phylogenetic species recognition (GCPSR) with a pairwise homoplasy index (PHI) test, and morphological characteristics led to the discovery of two new species, Dothiorella macadamiae and Phaeoacremonium chiangmaiense, and one ne

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Rising, James D., and John C. Avise. "Application of Genealogical-Concordance Principles to the Taxonomy and Evolutionary History of the Sharp-Tailed Sparrow (Ammodramus caudacutus)." Auk 110, no. 4 (1993): 844–56. http://dx.doi.org/10.2307/4088638.

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17

Churikov, D., M. Matsuoka, X. Luan, A. K. Gray, VL A. Brykov, and A. J. Gharrett. "Assessment of concordance among genealogical reconstructions from various mtDNA segments in three species of Pacific salmon (genus Oncorhynchus)." Molecular Ecology 10, no. 9 (2001): 2329–39. http://dx.doi.org/10.1046/j.1365-294x.2001.01354.x.

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18

Zhang, Xian, Saowaluck Tibpromma, Samantha C. Karunarathna, et al. "Additions to the saprobic fungi (Ascomycota) associated with macadamia trees from the Greater Mekong Subregion." MycoKeys 113 (January 24, 2025): 1–29. https://doi.org/10.3897/mycokeys.113.140031.

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Macadamia trees, the most economically important Proteaceae perennial crop, are globally renowned for their edible nuts. During our surveys of microfungi associated with macadamia in China and Thailand, we isolated three saprobic fungi from dead macadamia branches. Our multigene phylogenetic analyses (ITS, LSU, SSU, <i>tef</i>1-α, <i>TUB</i>2, and <i>ACT</i> loci), genealogical concordance phylogenetic species recognition (GCPSR) with a pairwise homoplasy index (PHI) test, and morphological characteristics led to the discovery of two new species, <i>Dothiorella macadamiae</i> and <i>Phaeoacrem

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19

Hasenmaile, Stefan, and Graham Pawelec. "The Concept of Telomeric Non-Reciprocal Recombination (TENOR) Applied to Human Fibroblasts Grown in Serial Cultures: Concordance with Genealogical Data." Rejuvenation Research 8, no. 3 (2005): 154–71. http://dx.doi.org/10.1089/rej.2005.8.154.

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20

An, Yuan-Yan, Monika C. Dayarathne, Xiang-Yu Zeng, Alan J. L. Phillips, Kevin D. Hyde, and Yong Wang. "Molecular and Morphological Assessment of Septoria Species Associated with Ornamental Plants in Yunnan Province, China." Journal of Fungi 7, no. 6 (2021): 483. http://dx.doi.org/10.3390/jof7060483.

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The Karst landform is the main geographic characteristic in South China. Such areas are rich in vegetation and especially suitable for growth of shrubs and herbaceous plants. In this study, 11 Septoria strains were obtained from different plants’ leaves collected in the Kunming Botanical Garden, Yunnan Province, China. Based on single-gene and multi-gene analyses of five gene loci (tef1, rpb2, tub2, ITS, and LSU) and four gene regions (without LSU), these strains were found to belong to three independent phylogenetic lineages representing five species, including four novel taxa, and one new re

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21

Nguyen, Hai D. T., Sašo Jančič, Martin Meijer, et al. "Application of the Phylogenetic Species Concept to Wallemia sebi from House Dust and Indoor Air Revealed by Multi-Locus Genealogical Concordance." PLOS ONE 10, no. 3 (2015): e0120894. http://dx.doi.org/10.1371/journal.pone.0120894.

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22

Chethana, K. W. T., Y. Zhou, W. Zhang, et al. "Coniella vitis sp. nov. Is the Common Pathogen of White Rot in Chinese Vineyards." Plant Disease 101, no. 12 (2017): 2123–36. http://dx.doi.org/10.1094/pdis-12-16-1741-re.

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Grape white rot is a common disease and causes considerable yield losses in many grape-growing regions when environmental conditions are favorable. We surveyed grape white rot in five provinces in China and collected 27 isolates from diseased grape tissues. Multigene phylogenetic analyses of the internal transcribed spacer region (ITS1-5.8S-ITS2), the 28S large subunit of nuclear ribosomal RNA (LSU), partial translation elongation factor 1-alpha gene (TEF 1-α), and partial histone 3 gene (HIS), coupled with genealogical concordance phylogenetic species recognition and morphological observation

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23

Qiao, Changxia, Ruiwen Zhao, Dewei Li, and Xiaolei Ding. "A New Species of Biscogniauxia Associated with Pine Needle Blight on Pinus thunbergii in China." Forests 15, no. 6 (2024): 956. http://dx.doi.org/10.3390/f15060956.

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In June 2020, needle blight symptoms on Pinus thunbergii were discovered in Bazhong City, Sichuan Province, China. Fungal isolates were obtained from the pine needles of P. thunbergii. After examining morphological characteristics and conducting multi-locus (ITS, ACT, TUB2 and RPB2) phylogenetic analyses, the isolates SC1–SC5 were determined to be a new species, Biscogniauxia sinensis. Genealogical Concordance Phylogenetic Species Recognition with a pairwise homoplasy index test was used to further verify the results of the phylogenetic analyses. The morphology and phylogenetic relationships b

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24

Pereira, Diana S., Sandra Hilário, Micael F. M. Gonçalves, and Alan J. L. Phillips. "Diaporthe Species on Palms: Molecular Re-Assessment and Species Boundaries Delimitation in the D. arecae Species Complex." Microorganisms 11, no. 11 (2023): 2717. http://dx.doi.org/10.3390/microorganisms11112717.

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Due to cryptic diversification, phenotypic plasticity and host associations, multilocus phylogenetic analyses have become the most important tool in accurately identifying and circumscribing species in the Diaporthe genus. However, the application of the genealogical concordance criterion has often been overlooked, ultimately leading to an exponential increase in novel Diaporthe spp. Due to the large number of species, many lineages remain poorly understood under the so-called species complexes. For this reason, a robust delimitation of the species boundaries in Diaporthe is still an ongoing c

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25

Haq, Imran Ul. "Genealogical concordance of phylogenetic species recognition-based delimitation of Neopestalotiopsis species associated with leaf spots and fruit canker disease affected guava plants." Pakistan Journal of Agricultural Sciences 58, no. 04 (2021): 1301–13. http://dx.doi.org/10.21162/pakjas/21.1045.

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Neopestalotiopsis species are known to be involved in plant diseases as associated pathogens. The taxonomic identification of the fungal group Neopestalotiopsisis little bit difficult due to its complex evolutionary history. In the present study, seven fungal isolates were investigated from canker-affected guava plants. The phylogeny for generic placement of these isolates was analyzed to validate them as Neopestalotiopsis genus by phylogenetic signals from the 28S nrRNA region (LSU). Generated morphological data was segregated as new morpho-species of the Neopestalotiopsis genus. Hence, the i

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Giontella, Andrea, Irene Cardinali, Hovirag Lancioni, et al. "Mitochondrial DNA Survey Reveals the Lack of Accuracy in Maremmano Horse Studbook Records." Animals 10, no. 5 (2020): 839. http://dx.doi.org/10.3390/ani10050839.

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The Maremmano horse is considered one of the most important Italian warmblood breeds which originated from an ancient population. In 1980, the National Association of Maremmano Breeders established the first Studbook that recorded 440 dams and four sire founders. In this study, we selected the most significant maternal lines in terms of offspring (for a total of 74 lineages and 92 Maremmano horses) and analyzed their mitochondrial DNA control regions. We found a high variability, reflecting the importance of this local breed as a genetic resource to be preserved. Through multiple sampling, we

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Gomdola, Deecksha, Eric H. C. McKenzie, Kevin D. Hyde, Digvijayini Bundhun, and Ruvishika S. Jayawardena. "Appressoria-Producing Sordariomycetes Taxa Associated with Jasminum Species." Pathogens 12, no. 12 (2023): 1407. http://dx.doi.org/10.3390/pathogens12121407.

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Appressoria are specialized structures formed by certain phytopathogenic fungi during the early stages of the infection process. Over the years, significant advancements have been made in understanding the formation, types, and functions of appressoria. Besides being formed primarily by fungal pathogens, many studies have reported their occurrence in other life modes such as endophytes, epiphytes, and saprobes. In this study, we observed the formation of appressoria in fungal genera that have been found associated with leaf spots and, interestingly, by a saprobic species. We used morphological

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28

Fatemi, Samira, Danny Haelewaters, Hector Urbina, Samuel Brown, Makenna L. Houston, and M. Catherine Aime. "Sporobolomyces lactucae sp. nov. (Pucciniomycotina, Microbotryomycetes, Sporidiobolales): An Abundant Component of Romaine Lettuce Phylloplanes." Journal of Fungi 8, no. 3 (2022): 302. http://dx.doi.org/10.3390/jof8030302.

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Shifts in food microbiomes may impact the establishment of human pathogens, such as virulent lineages of Escherichia coli, and thus are important to investigate. Foods that are often consumed raw, such as lettuce, are particularly susceptible to such outbreaks. We have previously found that an undescribed Sporobolomyces yeast is an abundant component of the mycobiome of commercial romaine lettuce (Lactuca sativa). Here, we formally describe this species as Sporobolomyces lactucae sp. nov. (Pucciniomycotina, Microbotryomycetes, and Sporidiobolales). We isolated multiple strains of this yeast fr

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29

Guevara-Suarez, M., D. García, J. F. Cano-Lira, J. Guarro, and J. Gené. "Species diversity in Penicillium and Talaromyces from herbivore dung, and the proposal of two new genera of penicillium-like fungi in Aspergillaceae." Fungal Systematics and Evolution 5, no. 1 (2020): 39–76. http://dx.doi.org/10.3114/fuse.2020.05.03.

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Coprophilous fungi are saprotrophic organisms that show great diversity, mainly on herbivore dung. The physico-chemical characteristics of this peculiar substrate combined with the high level of fungal adaptation to different environmental conditions offer the perfect setting for discovering new taxa. This study focused on the species diversity of penicillium-like fungi isolated mainly from herbivore dung collected at different Spanish locations. From 130 samples, a total of 104 isolates were obtained, and 48 species were identified. Preliminary identifications were based on morphology and par

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30

BUNDHUN, DIGVIJAYINI, RUVISHIKA S. JAYAWARDENA, and ERIO CAMPORESI. "Introducing Nigrograna italica sp. nov. (Nigrogranaceae) from Corylus avellana and Valsaria tectonae sp. nov. (Valsariaceae) from Tectona grandis." Phytotaxa 618, no. 2 (2023): 103–19. http://dx.doi.org/10.11646/phytotaxa.618.2.1.

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Two Dothideomycetes taxa collected from Italy and Thailand were investigated. The first collection, colonizing a dead branch of Corylus avellana in Italy, is identified as Nigrograna italica sp. nov. based on morphology, multi-locus phylogenetic analyses, as well as Genealogical Concordance Phylogenetic Species Recognition analysis (GCPSR). The new taxon, which forms a distinct basal lineage to Nigrograna obliqua, is principally characterised by immersed ascomata with an eccentric to centrally located ostiolar neck and brown hyphae near the ascomatal base and sides, which turn olivaceous or ol

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O’Donnell, Kerry, Todd J. Ward, David M. Geiser, H. Corby Kistler, and Takayuki Aoki. "Genealogical concordance between the mating type locus and seven other nuclear genes supports formal recognition of nine phylogenetically distinct species within the Fusarium graminearum clade." Fungal Genetics and Biology 41, no. 6 (2004): 600–623. http://dx.doi.org/10.1016/j.fgb.2004.03.003.

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Villafana, Ria T., and Sephra N. Rampersad. "Three-Locus Sequence Identification and Differential Tebuconazole Sensitivity Suggest Novel Fusarium equiseti Haplotype from Trinidad." Pathogens 9, no. 3 (2020): 175. http://dx.doi.org/10.3390/pathogens9030175.

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The Fusarium incarnatum-equiseti species complex (FIESC) consists of 33 phylogenetic species according to multi-locus sequence typing (MLST) and Genealogical Concordance Phylogenetic Species Recognition (GCPSR). A multi-locus dataset consisting of nucleotide sequences of the translation elongation factor (EF-1α), calmodulin (CAM), partial RNA polymerase largest subunit (RPB1), and partial RNA polymerase second largest subunit (RPB2), was generated to distinguish among phylogenetic species within the FIESC isolates infecting bell pepper in Trinidad. Three phylogenetic species belonged to the In

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Sun, Xiao-Rui, Ming-Ye Xu, Wei-Liang Kong, et al. "Fine Identification and Classification of a Novel Beneficial Talaromyces Fungal Species from Masson Pine Rhizosphere Soil." Journal of Fungi 8, no. 2 (2022): 155. http://dx.doi.org/10.3390/jof8020155.

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Rhizosphere fungi have the beneficial functions of promoting plant growth and protecting plants from pests and pathogens. In our preliminary study, rhizosphere fungus JP-NJ4 was obtained from the soil rhizosphere of Pinus massoniana and selected for further analyses to confirm its functions of phosphate solubilization and plant growth promotion. In order to comprehensively investigate the function of this strain, it is necessary to ascertain its taxonomic position. With the help of genealogical concordance phylogenetic species recognition (GCPSR) using five genes/regions (ITS, BenA, CaM, RPB1,

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Bustamante, Danilo E., Manuel Oliva, Santos Leiva, et al. "Phylogeny and species delimitations in the entomopathogenic genus Beauveria (Hypocreales, Ascomycota), including the description of B. peruviensis sp. nov." MycoKeys 58 (September 9, 2019): 47–68. http://dx.doi.org/10.3897/mycokeys.58.35764.

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The genus Beauveria is considered a cosmopolitan anamorphic and teleomorphic genus of soilborne necrotrophic arthropod-pathogenic fungi that includes ecologically and economically important species. Species identification in Beauveria is difficult because of its structural simplicity and the lack of distinctive phenotypic variation. Therefore, the use of multi-locus sequence data is essential to establish robust species boundaries in addition to DNA-based species delimitation methods using genetic distance, coalescent, and genealogical concordance approaches (polyphasic approaches). In this re

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Bustamante, Danilo E., Manuel Oliva, Santos Leiva, et al. "Phylogeny and species delimitations in the entomopathogenic genus Beauveria (Hypocreales, Ascomycota), including the description of B. peruviensis sp. nov." MycoKeys 58 (September 9, 2019): 47–68. https://doi.org/10.3897/mycokeys.58.35764.

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The genus Beauveria is considered a cosmopolitan anamorphic and teleomorphic genus of soilborne necrotrophic arthropod-pathogenic fungi that includes ecologically and economically important species. Species identification in Beauveria is difficult because of its structural simplicity and the lack of distinctive phenotypic variation. Therefore, the use of multi-locus sequence data is essential to establish robust species boundaries in addition to DNA-based species delimitation methods using genetic distance, coalescent, and genealogical concordance approaches (polyphasic approaches). In this re

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HARIKRISHNAN, KUNIYIL, KUNHIRAMAN C. RAJESHKUMAR, RAVINDRA M. PATIL, RAJESH JEEWON, NERIMAN YILMAZ, and COBUS M. VISAGIE. "Aspergillus dhakephalkarii and A. patriciawiltshireae spp. nov., two new species in Aspergillus sect. Nigri ser. Japonici (Eurotiales, Aspergillaceae) from India." Phytotaxa 695, no. 1 (2025): 57–79. https://doi.org/10.11646/phytotaxa.695.1.2.

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This study introduces two new black Aspergillus species, A. dhakephalkarii and A. patriciawiltshireae, in sect. Nigri ser. Japonici. Aspergillus dhakephalkarii and A. patriciawiltshireae were isolated from soils from the Western Ghats of India. The taxonomy of the new species was determined through a polyphasic approach that included phenotypic characteristics and phylogenetic analyses of the ribosomal internal transcribed spacer (ITS) region, and partial beta-tubulin (BenA), calmodulin (CaM) and RNA polymerase II second largest subunit (RPB2) genes applying Genealogical Concordance Phylogenet

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Groenewald, Johannes Z., Marizeth Groenewald, and Pedro W. Crous. "Impact of DNA data on fungal and yeast taxonomy." Microbiology Australia 32, no. 2 (2011): 100. http://dx.doi.org/10.1071/ma11100.

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The species richness and diversity existing in microorganisms are unparalleled on our planet. In recent years, the use of molecular techniques for the detection and identification of microorganisms, especially through DNA sequencing, has revolutionised the way taxonomists look at the systematics of a species, especially when applying multilocus sequence data and concepts such as the genealogical concordance phylogenetic species recognition (GCPSR) concept1. Particularly problematic topics arising in the fungi are, for example, naming pleomorphic fungi (that is, fungi for which a teleomorph, me

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Silva, Josué J. da, Beatriz T. Iamanaka, Larissa S. Ferranti, et al. "Diversity within Aspergillus niger Clade and Description of a New Species: Aspergillus vinaceus sp. nov." Journal of Fungi 6, no. 4 (2020): 371. http://dx.doi.org/10.3390/jof6040371.

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Diversity of species within Aspergillus niger clade, currently represented by A. niger sensu stricto and A. welwitshiae, was investigated combining three-locus gene sequences, Random Amplified Polymorphic DNA, secondary metabolites profile and morphology. Firstly, approximately 700 accessions belonging to this clade were investigated using calmodulin gene sequences. Based on these sequences, eight haplotypes were clearly identified as A. niger (n = 247) and 17 as A. welwitschiae (n = 403). However, calmodulin sequences did not provide definitive species identities for six haplotypes. To elucid

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Petrželová, Irena, and Michal Sochor. "How useful is the current species recognition concept for the determination of true morels? Insights from the Czech Republic." MycoKeys 52 (May 9, 2019): 17–43. http://dx.doi.org/10.3897/mycokeys.52.32335.

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The phylogentic diversity of the genus Morchella has only been sporadically studied in Central Europe. In this study, a molecular taxonomic revision of the Morchella species of the Czech Republic was performed using available fungarium specimens, fresh collections, and axenic cultures. Molecular phylogenetic analyses based on either ITS or five-locus (ITS, LSU, RPB1, RPB2, and EF-1α) sequencing and the application of principles of the genealogical concordance phylogenetic species recognition (GCPSR) have revealed the occurrence of 11 phylogenetic species in the region, but only six of them cou

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Petrželová, Irena, and Michal Sochor. "How useful is the current species recognition concept for the determination of true morels? Insights from the Czech Republic." MycoKeys 52 (May 9, 2019): 17–43. https://doi.org/10.3897/mycokeys.52.32335.

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The phylogentic diversity of the genus Morchella has only been sporadically studied in Central Europe. In this study, a molecular taxonomic revision of the Morchella species of the Czech Republic was performed using available fungarium specimens, fresh collections, and axenic cultures. Molecular phylogenetic analyses based on either ITS or five-locus (ITS, LSU, RPB1, RPB2, and EF-1α) sequencing and the application of principles of the genealogical concordance phylogenetic species recognition (GCPSR) have revealed the occurrence of 11 phylogenetic species in the region, but only six of them cou

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Han, L. H., G. Wu, E. Horak, et al. "Phylogeny and species delimitation of Strobilomyces (Boletaceae), with an emphasis on the Asian species." Persoonia - Molecular Phylogeny and Evolution of Fungi 44, no. 1 (2020): 113–39. http://dx.doi.org/10.3767/persoonia.2020.44.05.

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Strobilomyces is broadly distributed geographically and serves an important ecological function. However, it has been difficult to delimit species within the genus, primarily due to developmental variations and phenotypic plasticity. To elucidate phylogenetic relationships among species within the genus and to understand its species diversity, especially in Asia, materials of the genus collected from five continents (Africa, Asia, Australia, Europe, and North/Central America) were investigated. The phylogeny of Strobilomyces was reconstructed based on nucleotide sequences of four genes coding

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Trabelsi, Farah M., Dar’ya Yu Kryazhkova, and Il’ya A. Fedotov. "Neurobiological and Psychosocial Mechanisms of the Pathogenesis of Autoaggressive Behavior in Borderline Personality Disorder (Literature Review)." Nauka molodykh (Eruditio juvenium) 12, no. 1 (2024): 121–34. https://doi.org/10.23888/hmj2024121121-134.

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INTRODUCTION: Autoaggressive behavior in borderline personality disorder (BPD) in the form of suicidal attempts and non-suicidal autoaggressive behavior (NSAB) is an urgent topic of modern research. AIM: To study the neurobiological and psychosocial mechanisms of the pathogenesis of autoaggressive behavior in BPD. A literature review was performed by searching the database of primary medical sources using the selected keywords. The review was unsystematic and represented a semantic analysis of research works over the past 10 years (from 2013 to 2023). CONCLUSION: Most researchers accept that B

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Visagie, Cobus M., Neriman Yilmaz, Sándor Kocsubé, et al. "A review of recently introduced Aspergillus, Penicillium, Talaromyces and other Eurotiales species." Studies in Mycology 107 (January 10, 2024): 1–66. https://doi.org/10.3114/sim.2024.107.01.

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Abstract: The order Eurotiales is diverse and includes species that impact our daily lives in many ways. In the past, its taxonomy was difficult due to morphological similarities, which made accurate identification of species difficult. This situation improved and stabilised with recent taxonomic and nomenclatural revisions that modernised Aspergillus, Penicillium and Talaromyces. This was mainly due to the availability of curated accepted species lists and the publication of comprehensive DNA sequence reference datasets. This has also led to a sharp increase in the number of new species descr

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Komoń-Zelazowska, Monika, John Bissett, Doustmorad Zafari, et al. "Genetically Closely Related but Phenotypically Divergent Trichoderma Species Cause Green Mold Disease in Oyster Mushroom Farms Worldwide." Applied and Environmental Microbiology 73, no. 22 (2007): 7415–26. http://dx.doi.org/10.1128/aem.01059-07.

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ABSTRACT The worldwide commercial production of the oyster mushroom Pleurotus ostreatus is currently threatened by massive attacks of green mold disease. Using an integrated approach to species recognition comprising analyses of morphological and physiological characters and application of the genealogical concordance of multiple phylogenetic markers (internal transcribed spacer 1 [ITS1] and ITS2 sequences; partial sequences of tef1 and chi18-5), we determined that the causal agents of this disease were two genetically closely related, but phenotypically strongly different, species of Trichode

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Zamudio, Kelly R., Rayna C. Bell, and Nicholas A. Mason. "Phenotypes in phylogeography: Species’ traits, environmental variation, and vertebrate diversification." Proceedings of the National Academy of Sciences 113, no. 29 (2016): 8041–48. http://dx.doi.org/10.1073/pnas.1602237113.

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Almost 30 y ago, the field of intraspecific phylogeography laid the foundation for spatially explicit and genealogically informed studies of population divergence. With new methods and markers, the focus in phylogeography shifted to previously unrecognized geographic genetic variation, thus reducing the attention paid to phenotypic variation in those same diverging lineages. Although phenotypic differences among lineages once provided the main data for studies of evolutionary change, the mechanisms shaping phenotypic differentiation and their integration with intraspecific genetic structure ha

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Nevaci, Manuela. "Concordances romanes et convergences balcano-romanes dans les dialects roumains sud-danubiens. Aspects phonétiques, morphologiques et syntaxiques." Studia Universitatis Babeș-Bolyai Philologia 65, no. 4 (2020): 317–28. http://dx.doi.org/10.24193/subbphilo.2020.4.19.

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"Romance Concordances and Balcano-Romance Convergences in the South-Danubian Romanian Dialects. Phonetic, Morphological, and Syntactic Aspects. This paper proposes to emphasise the linguistic similarities of South-Danubian Romanian dialects (Aromanian, Megleno-Romanian, Istro-Romanian) spoken in Albania, Croatia, R. of North Macedonia, Greece and Romania from the perspective of Romance and Balkan elements. We will take into consideration lexical aspects, from the point of view of linguistic contact with Balkan languages, as well as Romance elements that define these historical dialects of comm

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Sgariglia, Erik A., and Kevin J. Burns. "Phylogeography of the California Thrasher (Toxostoma Redivivum) Based on Nested-Clade Analysis of Mitochondrial-DNA Variation." Auk 120, no. 2 (2003): 346–61. http://dx.doi.org/10.1093/auk/120.2.346.

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Abstract Distribution of genealogical lineages within a species is likely the result of a complicated series of ecological and historical events. Nested-clade analysis is specifically designed as an objective phylogeographic approach for inferring evolutionary processes on a spatial and temporal scale for small subclades within a larger set of intraspecific relationships. Here, we use nested-clade analysis as well as other phylogeographic methods to investigate the evolutionary history of California Thrasher (Toxostoma redivivum) populations. Inferences resulting from nested clade analysis sug

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Hsiao, C., N. J. Chatterton, K. H. Asay, and K. B. Jensen. "Phylogenetic relationships of the monogenomic species of the wheat tribe, Triticeae (Poaceae), inferred from nuclear rDNA (internal transcribed spacer) sequences." Genome 38, no. 2 (1995): 211–23. http://dx.doi.org/10.1139/g95-026.

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Phylogenetic relationships of 30 diploid species of Triticeae (Poaceae) representing 19 genomes were estimated from the sequences of the internal transcribed spacer (ITS) region of nuclear ribosomal DNA. The ITS sequence phylogeny indicated that: (i) each genome group of species is monophyletic, concordant with cytogenetic evidence; (ii) Hordeum (I) and Critesion (H) are basal; (iii) Australopyrum (W) is closely related to Agropyron (P); (iv) Peridictyon (G), Heteranthelium (Q), and Dasypyrum (V) are closely related to Pseudoroegneria (S); (v) most of the annuals, Triticum s.l. (A, B, D), Crit

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Bôas, João Paulo Simões Vilas. "GENEALOGIA DO NIILISMO EM NIETZSCHE: UMA INVESTIGAÇÃO SOBRE A INFLUÊNCIA DO CONTEXTO HISTÓRICO-LITERÁRIO DO NIILISMO RUSSO E DA LEITURA DE PAIS E FILHOS." Revista Dialectus - Revista de Filosofia 31, no. 31 (2023): 28–50. http://dx.doi.org/10.30611/2023n31id92696.

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Este artigo objetiva apresentar os resultados de uma investigação sobre a influência do contexto histórico-literário do niilismo russo — com destaque para o papel desempenhado pelo romance Pais e Filhos — no desenvolvimento das primeiras reflexões de Nietzsche sobre o niilismo, as quais foram registradas em dois textos póstumos de 1880. Principiando com um esclarecimento sobre a origem da palavra niilismo, o texto prossegue com uma caracterização do contexto social, político e cultural do Império Russo na segunda metade do século XIX. Na sequência, apresentamos uma análise das diferentes defin

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Zarei, Fatah, Hamid Reza Esmaeili, Keyvan Abbasi, Golnaz Sayyadzadeh, Soheil Eagderi, and Brian W. Coad. "Genealogical concordance, comparative species delimitation, and the specific status of the Caspian pipefish Syngnathus caspius (Teleostei: Syngnathidae)." Marine Ecology, December 31, 2020. http://dx.doi.org/10.1111/maec.12624.

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