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Dissertations / Theses on the topic 'Haplotype blocks'

Author: Grafiati

Published: 4 June 2021

Last updated: 6 February 2022

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1

Nothnagel, Michael. "The definition of multilocus haplotype blocks and common diseases." [S.l.] : [s.n.], 2004. http://deposit.ddb.de/cgi-bin/dokserv?idn=973611448.

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2

Nothnagel, Michael. "The definition of multilocus haplotype blocks and common diseases." Doctoral thesis, Humboldt-Universität zu Berlin, Medizinische Fakultät - Universitätsklinikum Charité, 2005. http://dx.doi.org/10.18452/15174.

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Bisherige Methoden der Haplotyp-Block-Definition zielen entweder auf abwesende Rekombinationsereignisse oder eine effiziente Beschreibung genomischer Variation. Die vorliegende Arbeit definiert Blöcke von Single Nucleotide Polymorphisms (SNP) als Gebiete erhöhten Kopplungsungleichgewichtes (LD). Für dieses Ziel wird ein neues, entropie-basiertes Maß für LD zwischen multiplen Markern/Loci (Normalized Entropy Difference) entwickelt und als eine Multilocus-Erweiterung des paarweisen Maßes r2 charakterisiert. Ein zugehöriger Algorithmus für die Block-Definition wird vorgeschlagen. Seine Evaluierun

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3

Azuero, Andres. "Comparisons of sequential testing approaches for detection of association between disease and haplotype blocks." Thesis, Birmingham, Ala. : University of Alabama at Birmingham, 2008. https://www.mhsl.uab.edu/dt/2009r/azuero.pdf.

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4

Andrade, Edilene Santos de. "Desequilíbrio de Ligação e Blocos de Haplótipos Determinados pela Análise de 250K SNPs em Três Remanescentes de Quilombos." Universidade de São Paulo, 2013. http://www.teses.usp.br/teses/disponiveis/17/17135/tde-24102013-105202/.

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A associação não aleatória entre alelos de diferentes lócus caracteriza o que é chamado de desequilíbrio de ligação (DL) entre eles. A extensão do DL nas populações humanas pode ser influenciada por muitos fatores, tais como taxa de recombinação, características demográficas (idade, tamanho e taxa de crescimento) e fatores evolutivos (deriva genética, efeito fundador, gargalos populacionais, mutação, seleção e fluxo gênico). Portanto, o conhecimento dos padrões do DL fornecem dados que auxiliam na descrição dos eventos demográficos e evolutivos sofridos pelas populações. O objetivo deste estud

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5

Angulo, Rafael Villa. "Computational methods for haplotype inference with application to haplotype block characterization in cattle." Fairfax, VA : George Mason University, 2009. http://hdl.handle.net/1920/4558.

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Thesis (Ph.D.)--George Mason University, 2009.<br>Vita: p. 123. Thesis director: John J. Grefenstette. Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Bioinformatics and Computational Biology. Title from PDF t.p. (viewed Sept. 8, 2009). Includes bibliographical references (p. 114-122). Also issued in print.

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6

Vijaya, Satya Ravi. "ALGORITHMS FOR HAPLOTYPE INFERENCE AND BLOCK PARTITIONING." Doctoral diss., University of Central Florida, 2006. http://digital.library.ucf.edu/cdm/ref/collection/ETD/id/2490.

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The completion of the human genome project in 2003 paved the way for studies to better understand and catalog variation in the human genome. The International HapMap Project was started in 2002 with the aim of identifying genetic variation in the human genome and studying the distribution of genetic variation across populations of individuals. The information collected by the HapMap project will enable researchers in associating genetic variations with phenotypic variations. Single Nucleotide Polymorphisms (SNPs) are loci in the genome where two individuals differ in a single base. It is estim

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7

Sazonova, Nadezhda A. "Parsimony-based genetic algorithm for haplotype resolution and block partitioning." Morgantown, W. Va. : [West Virginia University Libraries], 2007. https://eidr.wvu.edu/etd/documentdata.eTD?documentid=5499.

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Thesis (Ph. D.)--West Virginia University, 2007.<br>Title from document title page. Document formatted into pages; contains xi, 127 p. : ill. Includes abstract. Includes bibliographical references (p. 109-114).

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8

Zhang, Ruosi. "Simulations of Different P-values Combination Methods Using SNPs on Diverse Biology Levels." Digital WPI, 2019. https://digitalcommons.wpi.edu/etd-theses/1317.

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The method of combination p-values from multiple tests is the foundation for some studies like meta-analysis and detection of signal. There are tremendous methods have been developed and applied like minimum p-values, Cauchy Combination, goodness-of-fit combination and Fisher’s combination. In this paper, I tested their ability to detect signals which is related to real case in biology to find out significant single-nucleotide polymorphisms (SNPs). I simulated p-values for SNPs logistics regression model and test 7 combination methods’ power performance in different setting conditions. I compa

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9

Younkin, Samuel G. "The Linkage Disequilibrium LASSO for SNP Selection in Genetic Association Studies." Case Western Reserve University School of Graduate Studies / OhioLINK, 2011. http://rave.ohiolink.edu/etdc/view?acc_num=case1291219489.

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10

Su, Wei-Shun, and 蘇偉順. "A Study on SNP Haplotype Blocks." Thesis, 2006. http://ndltd.ncl.edu.tw/handle/bcgm7f.

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碩士<br>靜宜大學<br>資訊管理學系研究所<br>94<br>Global patterns of human DNA sequence variation (haplotypes) defined by common single nucleotide polymorphisms (SNPs) have important implications for identifying disease associations and human traits. Recent genetics research reveals that SNPs within certain haplotype blocks induce only a few distinct common haplotypes in the majority of the population. The existence of haplotype block structure has serious implications for association-based methods for the mapping of disease genes. Our ultimate goal is to select haplotype block designations that best capture

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11

Nothnagel, Michael [Verfasser]. "The definition of multilocus haplotype blocks and common diseases / von Michael Nothnagel." 2004. http://d-nb.info/973611448/34.

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12

Pook, Torsten. "Methods and software to enhance statistical analysis in large scale problems in breeding and quantitative genetics." Doctoral thesis, 2019. http://hdl.handle.net/21.11130/00-1735-0000-0005-129C-7.

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13

Yu, Zhaoxia. "Haplotype block and genetic association." Thesis, 2006. http://hdl.handle.net/1911/19001.

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The recently identified (Daly et al. 2001 and Patil et al. 2001) block-like structure in the human genome has attracted much attention since each haplotype block contains limited sequence variation, which can reduce the complexity in genetic mapping studies. This dissertation focuses on estimating haplotype block structures and their application to genetic mapping using single nucleotide polymorphisms (SNPs) from unrelated individuals. Among other issues, the traditional single marker association study leads to the problem of multiple testing, which is still not well understood in the context

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14

Sun, Chia-Ling, and 孫嘉璘. "SNP Haplotype Block Inference and Tag Selection Algorithm." Thesis, 2004. http://ndltd.ncl.edu.tw/handle/07021456484406554284.

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碩士<br>國立中山大學<br>資訊工程學系研究所<br>92<br>SNP (single nucleotide polymorphisms, pronounce as snip) is one nucleotide position difference within human population. These differences can be detected in human genome and the difference occurs once about every 1000 base pairs. There are only two possible nucleotides in each SNP position. As a genetic marker, SNP data can be used to capture human disease traits because of its abundance and low diversity. In recent research results, it has been shown that there is a block-like structure in human genome, and only limited haplotype diversity can be observe

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15

Hua, Guanjie, and 滑冠傑. "Haplotype Block Partitioning and TagSNP Selection with MapReduce Framework." Thesis, 2013. http://ndltd.ncl.edu.tw/handle/13072946241409858351.

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碩士<br>靜宜大學<br>資訊工程學系<br>101<br>SNPs play important roles for various analysis applications including medical diagnostic and drug design. They contain the highest-resolution genetic fingerprint for identifying disease associations and human features. Haplotype, is composed of SNPs, region of linked genetic variants that are neighboring usually inherited together. Recently, genetics researches show that SNPs within certain haplotype blocks induce only a few distinct common haplotypes in the majority of the population. The discussion of haplotype block has serious implications of method with asso

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