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Journal articles on the topic 'Hyphomicrobiaceae'

Author: Grafiati

Published: 4 June 2025

Last updated: 1 August 2025

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1

Hudz, S. O. "FORMATION OF THE EUBACTERIAL COMPLEX IN THE RHYOSPHERE OF SUGAR BEET (Beta vulgaris) UNDER DIFFERENT FERTILIZATION SYSTEMS." Biotechnologia Acta 14, no. 1 (2021): 81–87. http://dx.doi.org/10.15407/biotech14.01.81.

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The aim of the work was to determine the quantitative, qualitative composition and taxonomic structure of the eubacterial complex in the rhizosphere of sugar beet under different fertilizer systems. Microbiological methods were used to determine the content of microorganisms in the rhizosphere of sugar beet. Molecular methods were used to determine taxonomic structure as well as metagenome of the eubacterial complex of microorganisms. In the agrocenosis of sugar beet under different fertilizer systems the representatives of such families were prevailed as Alcaligenaceae, Pseudomonadaceae, Nitr

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Hudz, S. "FORMATION OF THE EUBACTERIAL COMPLEX IN THE RHYOSPHERE OF SUGAR BEET (Beta vulgaris) UNDER DIFFERENT FERTILIZATION SYSTEMS." Biotechnologia Acta 14, no. 1 (2021): 81–87. https://doi.org/10.15407/biotech14.01.081.

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The aim of the work was to determine the quantitative, qualitative composition and taxonomic structure of the eubacterial complex in the rhizosphere of sugar beet under different fertilizer systems. Microbiological methods were used to determine the content of microorganisms in the rhizosphere of sugar beet. Molecular methods were used to determine taxonomic structure as well as metagenome of the eubacterial complex of microorganisms. In the agrocenosis of sugar beet under different fertilizer systems the representatives of such families were prevailed as Alcaligenaceae, Pseudomonadaceae, Nitr

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Wang, Yun-xiang, Fa-qi Huang, Yuichi Nogi, Shou-ji Pang, Ping-kang Wang, and Jie Lv. "Youhaiella tibetensis gen. nov., sp. nov., isolated from subsurface sediment." International Journal of Systematic and Evolutionary Microbiology 65, Pt_7 (2015): 2048–55. http://dx.doi.org/10.1099/ijs.0.000219.

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A Gram-reaction-negative bacterial strain, designated fig4T, was isolated from a subsurface sediment core of Qiangtang Basin permafrost in China. Cells were catalase- and oxidase-positive and rods. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain fig4T was a member of the family Hyphomicrobiaceae and was most closely related to members of the genera Pelagibacterium, Vasilyevaea and Devosia with 93.8–96.2 % sequence similarities. The major cellular fatty acids were C16 : 0, C18 : 0, 11-methyl C18 : 1ω7c, C19 : 0 cyclo ω8c and summed feature 8 (C18 : 1ω7c and/or C18 :

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Hwang, C. Y., and B. C. Cho. "Cucumibacter marinus gen. nov., sp. nov., a marine bacterium in the family Hyphomicrobiaceae." INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 58, no. 7 (2008): 1591–97. http://dx.doi.org/10.1099/ijs.0.65587-0.

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Xu, H. Y., L. P. Chen, S. Z. Fu, et al. "Zhangella mobilis gen. nov., sp. nov., a new member of the family Hyphomicrobiaceae isolated from coastal seawater." INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 59, no. 9 (2009): 2297–301. http://dx.doi.org/10.1099/ijs.0.004366-0.

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Xu, Xue-Wei, Ying-Yi Huo, Chun-Sheng Wang, et al. "Pelagibacterium halotolerans gen. nov., sp. nov. and Pelagibacterium luteolum sp. nov., novel members of the family Hyphomicrobiaceae." International Journal of Systematic and Evolutionary Microbiology 61, no. 8 (2011): 1817–22. http://dx.doi.org/10.1099/ijs.0.023325-0.

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Two Gram-negative, motile, aerobic bacterial strains, designated B2T and 1_C16_27T, were respectively isolated from a seawater sample collected from the East China Sea and a semi-coke sample from north-eastern Estonia. Their genetic, phenotypic and chemotaxonomic properties were studied. The isolates were short rods with polar flagella and were positive for catalase and oxidase activities. Q-10 was the predominant respiratory ubiquinone. The major polar lipids were phosphatidylglycerol, diphosphatidylglycerol and two unidentified glycolipids. The major fatty acids were nonadecanoic (C19 : 0 cy

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Barak, Hana, Pradeep Kumar, Arieh Zaritsky, et al. "Diversity of Bacterial Biota in Capnodis tenebrionis (Coleoptera: Buprestidae) Larvae." Pathogens 8, no. 1 (2019): 4. http://dx.doi.org/10.3390/pathogens8010004.

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The bacterial biota in larvae of Capnodis tenebrionis, a serious pest of cultivated stone-fruit trees in the West Palearctic, was revealed for the first time using the MiSeq platform. The core bacterial community remained the same in neonates whether upon hatching or grown on peach plants or an artificial diet, suggesting that C. tenebrionis larvae acquire much of their bacterial biome from the parent adult. Reads affiliated with class levels Gammaproteobacteria and Alphaproteobacteria (phylum Proteobacteria ca. 86%), and Actinobacteria (ca. 14%) were highly abundant. Most diverse reads belong

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Mu, Yao, Lingli Zhou, Xian-Chun Zeng, et al. "Arsenicitalea aurantiaca gen. nov., sp. nov., a new member of the family Hyphomicrobiaceae, isolated from high-arsenic sediment." International Journal of Systematic and Evolutionary Microbiology 66, no. 12 (2016): 5478–84. http://dx.doi.org/10.1099/ijsem.0.001543.

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Almeida, Juliana R., Joana C. Fradinho, Gilda Carvalho, Adrian Oehmen, and Maria A. M. Reis. "Dynamics of Microbial Communities in Phototrophic Polyhydroxyalkanoate Accumulating Cultures." Microorganisms 10, no. 2 (2022): 351. http://dx.doi.org/10.3390/microorganisms10020351.

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Phototrophic mixed cultures (PMC) are versatile systems which can be applied for waste streams, valorisation and production of added-value compounds, such as polyhydroxyalkanoates (PHA). This work evaluates the influence of different operational conditions on the bacterial communities reported in PMC systems with PHA production capabilities. Eleven PMCs, fed either with acetate or fermented wastewater, and selected under either feast and famine (FF) or permanent feast (PF) regimes, were evaluated. Overall, results identified Chromatiaceae members as the main phototrophic PHA producers, along w

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Li, Yunlong, Yimin Wang, Chao Shen, et al. "Structural and Predicted Functional Diversities of Bacterial Microbiome in Response to Sewage Sludge Amendment in Coastal Mudflat Soil." Biology 10, no. 12 (2021): 1302. http://dx.doi.org/10.3390/biology10121302.

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The study investigated the influence of sewage sludge application at rates of 0 (CK), 30 (ST), 75 (MT), and 150 (HT) t ha−1 to mudflats on bacterial community diversity and predicted functions using amplicon-based sequencing. Soils under sewage sludge treatments, especially the HT treatment, exhibited lower pH, salinity and higher nutrient contents (C, N, and P). Moreover, restructured bacterial communities with significantly higher diversities and distinct core and unique microbiomes were observed in all sewage sludge-amended soils as compared to the control. Specifically, core bacterial fami

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Im, Wan-Taek, Zubair Aslam, Myungjin Lee, Leonid N. Ten, Deok-Chun Yang, and Sung-Taik Lee. "Starkeya koreensis sp. nov., isolated from rice straw." International Journal of Systematic and Evolutionary Microbiology 56, no. 10 (2006): 2409–14. http://dx.doi.org/10.1099/ijs.0.64093-0.

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A facultatively chemolithoautotrophic, Gram-negative, aerobic, highly curved rod-shaped, non-motile, non-spore-forming bacterium, strain Jip08T, was isolated from rice straw in Daejeon, South Korea. Strain Jip08T produced colourless colonies (1.0–1.5 mm) on R2A medium after 3 days. On the basis of 16S rRNA gene sequence similarity, strain Jip08T was shown to belong to the α-2 subclass of the Proteobacteria, and was most closely related to Starkeya novella IAM 12100T (98.6 %), Angulomicrobium tetraedale DSM 5895T (98.1 %), Angulomicrobium amanitiforme NCIMB 1785T (98.0 %), Ancylobacter aquaticu

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Jing, Zhao, Li Ming, Liu Qin, Zhou Zhiming, and Ye Changbing. "Addition of chitosan improves the efficiency of total phosphorus removal from wastewater using the D-A2O reactor and metagenomic analysis." Water Policy 23, no. 6 (2021): 1530–41. http://dx.doi.org/10.2166/wp.2021.065.

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Abstract Microbial phosphate removal from wastewater sewage is a promising and feasible technique that increases the ability of a sewage treatment system to remove phosphate from wastewater. Maintaining a healthy population of phosphate-solubilizing bacteria is the key premise of biological sewage treatment. Chitosan is used to remove dissolved phosphorus from the water column during wastewater treatment. The present study found that chitosan has another function in phosphorus removal, affecting the diversity and community composition of phosphate-solubilizing bacteria. We obtained 16S rRNA ge

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Thamvithayakorn, Pisit, Cherdchai Phosri, Louisa Robinson-Boyer, Puenisara Limnonthakul, John H. Doonan, and Nuttika Suwannasai. "The Synergistic Impact of a Novel Plant Growth-Promoting Rhizobacterial Consortium and Ascophyllum nodosum Seaweed Extract on Rhizosphere Microbiome Dynamics and Growth Enhancement in Oryza sativa L. RD79." Agronomy 14, no. 11 (2024): 2698. http://dx.doi.org/10.3390/agronomy14112698.

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This study investigated the combined effects of novel plant growth-promoting rhizobacteria (PGPR)—Agrobacterium pusense NC2, Kosakonia oryzae WN104, and Phytobacter sp. WL65—and Ascophyllum nodosum seaweed extract (ANE) as biostimulants (PGPR-ANE) on rice growth, yield, and rhizosphere bacterial communities using the RD79 cultivar. The biostimulants significantly enhanced plant growth, shoot and root length, and seedling vigour; however, seed germination was not affected. In pot experiments, biostimulant application significantly increased the richness and evenness of bacterial communities in

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Panahandeh, Yousef, Ebrahim Pourjam, Joaquín Abolafia, et al. "Labrys khuzestanensis n. sp. (Nematoda, Tylenchidae), a new member of the genus with large labial plate." Zootaxa 4671, no. 2 (2019): 267–76. https://doi.org/10.11646/zootaxa.4671.2.7.

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Panahandeh, Yousef, Pourjam, Ebrahim, Abolafia, Joaquín, Roshan-Bakhsh, Ali, Mojerlou, Shideh, Afshar, Farahnaz Jahanshahi, Pedram, Majid (2019): Labrys khuzestanensis n. sp. (Nematoda, Tylenchidae), a new member of the genus with large labial plate. Zootaxa 4671 (2): 267-276, DOI: 10.11646/zootaxa.4671.2.7

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Molari, Massimiliano, Felix Janssen, Tobias R. Vonnahme, Frank Wenzhöfer, and Antje Boetius. "The contribution of microbial communities in polymetallic nodules to the diversity of the deep-sea microbiome of the Peru Basin (4130–4198 m depth)." Biogeosciences 17, no. 12 (2020): 3203–22. http://dx.doi.org/10.5194/bg-17-3203-2020.

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Abstract. Industrial-scale mining of deep-sea polymetallic nodules will remove nodules in large areas of the sea floor. The regrowth of the nodules by metal precipitation is estimated to take millions of years. Thus, for future mining impact studies, it is crucial to understand the role of nodules in shaping microbial diversity and function in deep-sea environments. Here we investigated microbial-community composition based on 16S rRNA gene sequences retrieved from sediments and nodules of the Peru Basin (4130–4198 m water depth). The nodule field of the Peru Basin showed a typical deep-sea mi

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16

Quan, Xiao-Tian, Muhammad Zubair Siddiqi, Qing-Zhen Liu, Sang-Mi Lee, and Wan-Taek Im. "Devosia ginsengisoli sp. nov., isolated from ginseng cultivation soil." International Journal of Systematic and Evolutionary Microbiology 70, no. 3 (2020): 1489–95. http://dx.doi.org/10.1099/ijsem.0.003843.

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A Gram-stain-negative, strictly aerobic, motile, ivory-coloured and rod-shaped bacterium (designated Gsoil 520T) isolated from ginseng cultivation soil was characterized by using a polyphasic approach to clarify its taxonomic position. Strain Gsoil 520T was observed to grow optimally at 30 °C and pH 7.0 on Reasoner's 2A agar medium. The results of phylogenetic analysis, based on 16S rRNA gene sequence similarities, indicated that Gsoil 520T belongs to the genus Devosia of the family Hyphomicrobiaceae and was most closely related to Devosia epidermidihirudinis E84T (98.0 %), Devosia yakushimens

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Srinivas, A., Ch Sasikala, and Ch V. Ramana. "Rhodoplanes oryzae sp. nov., a phototrophic alphaproteobacterium isolated from the rhizosphere soil of paddy." International Journal of Systematic and Evolutionary Microbiology 64, Pt_7 (2014): 2198–203. http://dx.doi.org/10.1099/ijs.0.063347-0.

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A Gram-stain-negative, rod-shaped, phototrophic bacterium, strain JA793T, was isolated from rhizosphere soil of paddy. The strain was capable of growing phototrophically and chemotrophically. Bacteriochlorophyll-a and carotenoids of the spirilloxanthin series were present as photosynthetic pigments. The major fatty acid of strain JA793T was C18 : 1ω7c/C18 : 1ω6c (>65.7 %), with minor amounts of C16 : 0, C16 : 1ω7c/C16 : 1ω6c, C20 : 2ω6,9c, C16 : 0 3-OH, C14 : 0 and C18 : 0 also present. Ubiquinone-10 and rhodoquinone-10 were present as primary quinones. Phosphatidylglycerol, phosphatidyleth

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Jordan, Elizabeth Mary, Fabiano L. Thompson, Xiao-Hua Zhang, et al. "Sneathiella chinensis gen. nov., sp. nov., a novel marine alphaproteobacterium isolated from coastal sediment in Qingdao, China." International Journal of Systematic and Evolutionary Microbiology 57, no. 1 (2007): 114–21. http://dx.doi.org/10.1099/ijs.0.64478-0.

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The taxonomic position of strain LMG 23452T, which was isolated from coastal sediment from an aquaculture site near Qingdao, China, in 2000, was determined. Strain LMG 23452T comprised Gram-negative, non-spore-forming, motile rods and was found to be a halotolerant, aerobic, chemoheterotroph that produces catalase and oxidase. Comparative 16S rRNA gene sequence analysis revealed that strain LMG 23452T shared approximately 89 % sequence similarity with members of the genera Devosia, Hyphomonas, Ensifer and Chelatococcus, which belong to two different orders within the Alphaproteobacteria. Furth

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Kolesnikova, I. M., M. S. Karbyshev, A. M. Gaponov, et al. "Features of bacterial DNA taxonomy in blood of patients with various metabolic phenotypes of obesity." Bulletin of Siberian Medicine 22, no. 2 (2023): 61–67. http://dx.doi.org/10.20538/1682-0363-2023-2-61-67.

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Aim. To study the blood microbiome taxonomy in patients with metabolically healthy obesity (MHO) and metabolically unhealthy obesity (MUHO).Materials and methods. The study included healthy donors without obesity (n = 116) and obese patients who were divided into subgroups with MHO (n = 36) and MUHO (n = 53). Bacterial DNA isolated from blood samples was subject to metagenomic sequencing of the v3–v4 variable region in the 16S rRNA gene. We compared the frequency of isolating certain taxa from the samples and the proportion of these taxa in the total pool of bacterial DNA in the blood.Results.

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Richter, Pia, Brigitte Melzer, and Frank D. Müller. "Interacting bactofilins impact cell shape of the MreB-less multicellular Rhodomicrobium vannielii." PLOS Genetics 19, no. 5 (2023): e1010788. http://dx.doi.org/10.1371/journal.pgen.1010788.

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Most non-spherical bacteria rely on the actin-like MreB cytoskeleton to control synthesis of a cell-shaping and primarily rod-like cell wall. Diverging from simple rod shape generally requires accessory cytoskeletal elements, which locally interfere with the MreB-guided cell wall synthesis. Conserved and widespread representatives of this accessory cytoskeleton are bactofilins that polymerize into static, non-polar bundles of filaments. Intriguingly, many species of the Actinobacteria and Rhizobiales manage to grow rod-like without MreB by tip extension, yet some of them still possess bactofil

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Peprah, Sefa, Patrick Addo-Fordjour, Bernard Fei-Baffoe, Kwadwo Boampong, Silas Wintuma Avicor, and James Damsere-Derry. "Effects of pesticide application on soil bacteria community structure in a cabbage-based agroecosystem in Ghana." PLOS One 20, no. 5 (2025): e0323936. https://doi.org/10.1371/journal.pone.0323936.

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Modern sustainable agriculture often relies on pesticide application, which may unintentionally affect non-target soil microorganisms. This study assessed the effects of commonly used pesticides in cabbage cultivation on bacteria diversity, composition, and abundance in soils from some farming communities in Bosome Freho District, Ghana. The pesticides included a neonicotinoid (acetamiprid), microbial agents (Pieris rapae granulosis virus+ Bacillus thuringiensis), avermectin (emamectin benzoate), and pyrrole (chlorfenapyr). Soil samples were collected from non-contaminated (NCS), abandoned pes

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Montenegro, Inês P. F. M., Ana P. Mucha, Maria Paola Tomasino, Carlos Rocha Gomes, and Cristina Marisa R. Almeida. "Alkylphenols and Chlorophenols Remediation in Vertical Flow Constructed Wetlands: Removal Efficiency and Microbial Community Response." Water 13, no. 5 (2021): 715. http://dx.doi.org/10.3390/w13050715.

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This study aims to investigate the effect of two different groups of phenolic compounds (the alkylphenols nonylphenol (NP) and octylphenol (OP), and the chlorophenol pentachlorophenol (PCP)) on constructed wetlands (CWs) performance, including on organic matter, nutrients and contaminants removal efficiency, and on microbial community structure in the plant bed substrate. CWs were assembled at lab scale simulating a vertical flow configuration and irrigated along eight weeks with Ribeira de Joane (an urban stream) water not doped (control) or doped with a mixture of NP and OP or with PCP (at a

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Einen, J., C. Kruber, L. Øvreås, I. H. Thorseth, and T. Torsvik. "Microbial colonization and alteration of basaltic glass." Biogeosciences Discussions 3, no. 2 (2006): 273–307. http://dx.doi.org/10.5194/bgd-3-273-2006.

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Abstract. Microorganisms have been reported to be associated with the alteration of the glassy margin of seafloor pillow basalts (Thorseth et al., 2001, 2003; Lysnes et al., 2004). The amount of iron and other biological important elements present in basalts and the vast abundance of basaltic glass in the earth's crust, make glass alteration an important process in global element cycling. To gain further insight into microbial communities associated with glass alteration, five microcosm experiments mimicking seafloor conditions were inoculated with seafloor basalt and incubated for one year. M

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Araujo, Maicon, Fernando Rossi, Amanda Bendia, et al. "Shotgun metagenomics from Monte Cristo cave (Brazil) reveals microbial metabolic potential related to iron and manganese biogeochemical cycles." ARPHA Conference Abstracts 6 (October 13, 2023): e108139. https://doi.org/10.3897/aca.6.e108139.

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Caves are among the most singular and understudied environments on Earth. Due to the harsh conditions observed in many caves, including scarcity of nutrients and low levels of light, these ecosystems are considered extreme environments (Gabriel and Northup 2012). Therefore, it may be worth paying special attention to the microbial communities existing in these unique systems. Previously, it has been suggested that the high levels of Manganese (Mn) and Iron (Fe) at Lechuguilla and Spider Caves in the United States may influence their microbial community structure in different ways (Northup et a

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Jin, Hyun Mi, Jung-Hoon Yoon, Seung-Bum Kim, et al. "A report of 42 unrecorded bacterial species belonging to the Alphaproteobacteria in Korea." Journal of Species Research 5, no. 2 (2016): 206–19. https://doi.org/10.12651/JSR.2016.5.2.206.

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Jin, Hyun Mi, Yoon, Jung-Hoon, Kim, Seung-Bum, Jahng, Kwang-Yeop, Cho, Jang-Cheon, Joh, Ki-seong, Cha, Chang-Jun, Seong, Chi-Nam, Bae, Jin-Woo, Im, Wan-Taek, Jeon, Che-Ok (2016): A report of 42 unrecorded bacterial species belonging to the Alphaproteobacteria in Korea. Journal of Species Research 5 (2): 206-219, DOI: 10.12651/JSR.2016.5.2.206, URL: http://dx.doi.org/10.12651/jsr.2016.5.2.206

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Liu, Qingmei, Seung-Bum Kim, Jang-Cheon Cho, et al. "A report of 29 unrecorded bacterial species in Korea, belonging to the Alphaproteobacteria." Journal of Species Research 4, no. 2 (2015): 97–108. https://doi.org/10.12651/JSR.2015.4.2.097.

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Liu, Qingmei, Kim, Seung-Bum, Cho, Jang-Cheon, Yoon, Jung-Hoon, Joh, Ki-seong, Cha, Chang-Jun, Chun, Jong-sik, Seong, Chi-Nam, Bae, Jin-Woo, Jahng, Kwang-Yeop, Jeon, Che-Ok, Im, Wan-Taek (2015): A report of 29 unrecorded bacterial species in Korea, belonging to the Alphaproteobacteria. Journal of Species Research 4 (2): 97-108, DOI: 10.12651/JSR.2015.4.2.097, URL: http://dx.doi.org/10.12651/jsr.2015.4.2.097

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Liu, Qingmei, Seung-Bum Kim, Jung-Hoon Yoon, et al. "Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria." Journal of Species Research 8, no. 4 (2019): 351–64. https://doi.org/10.12651/JSR.2019.8.4.351.

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Liu, Qingmei, Kim, Seung-Bum, Yoon, Jung-Hoon, Joh, Kiseong, Seong, Chi-Nam, Jeon, Che-Ok, Kim, Wonyong, Im, Myung Kyum Kim and Wan-Taek (2019): Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria. Journal of Species Research 8 (4): 351-364, DOI: 10.12651/JSR.2019.8.4.351

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Jung, Hye Su, Jung-Hoon Yoon, Kiseong Joh, et al. "A report of 35 unrecorded bacterial species belonging to the classes Alphaproteobacteria and Betaproteobacteria in Korea." Journal of Species Research 10, no. 1 (2021): 12–22. https://doi.org/10.12651/JSR.2021.10.1.012.

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Jung, Hye Su, Yoon, Jung-Hoon, Joh, Kiseong, Seong, Chi-Nam, Kim, Won-Yong, Im, Wan-Taek, Kim, Myung-Kyum, Cha, Chang-Jun, Kim, Seung-Bum, Jeon, Che-Ok (2021): A report of 35 unrecorded bacterial species belonging to the classes Alphaproteobacteria and Betaproteobacteria in Korea. Journal of Species Research 10 (1): 12-22, DOI: 10.12651/JSR.2021.10.1.012

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Lim, Yeonjung, Hyeonuk Sa, Minjeong Kim, Minseok Kim, Jisoo Han, and Hyerim Cho and Jang-Cheon Cho. "Discovery of 18 previously unrecorded bacterial species in the coastal areas surrounding Korean islands in 2023." Journal of Species Research 13, no. 3 (2024): 318–25. https://doi.org/10.12651/JSR.2024.13.3.318.

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Lim, Yeonjung, Sa, Hyeonuk, Kim, Minjeong, Kim, Minseok, Han, Jisoo, Cho, Hyerim Cho and Jang-Cheon (2024): Discovery of 18 previously unrecorded bacterial species in the coastal areas surrounding Korean islands in 2023. Journal of Species Research 13 (3): 318-325, DOI: 10.12651/JSR.2024.13.3.318

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Jung, Hye Su, Jung-Hoon Yoon, Seung-Bum Kim, et al. "A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria." Journal of Species Research 8, no. 2 (2019): 161–75. https://doi.org/10.12651/JSR.2019.8.2.161.

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Jung, Hye Su, Yoon, Jung-Hoon, Kim, Seung-Bum, Yi, Hana, Cho, Jang-Cheon, Joh, Kiseong, Cha, Chang-Jun, Seong, Chi-Nam, Bae, Jin-Woo, Im, Wan-Taek, Kim, Myung Kyum, Jeon, Soon Dong Lee and Che Ok (2019): A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria. Journal of Species Research 8 (2): 161-175, DOI: 10.12651/JSR.2019.8.2.161

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Kim, Mirae, Jaeho Song, Dabin Yu, et al. "A report of 28 unrecorded bacterial species in Korea, isolated from freshwater and sediment of the Han River watershed in 2020." Journal of Species Research 10, no. 3 (2021): 227–36. https://doi.org/10.12651/JSR.2021.10.3.227.

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Kim, Mirae, Song, Jaeho, Yu, Dabin, Kim, Younghoo, Bae, Seok Hwan, Park, Miri S., Cho, Yeonjung Lim and Jang-Cheon (2021): A report of 28 unrecorded bacterial species in Korea, isolated from freshwater and sediment of the Han River watershed in 2020. Journal of Species Research 10 (3): 227-236, DOI: 10.12651/JSR.2021.10.3.227

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Jo, Jung-Hun, Seung-Bum Kim, Ji-Eun Im, and Se-Yoon Chun and Wan-Taek Im. "Description of 41 unrecorded bacterial species in Korea, isolated from freshwater in 2021." Journal of Species Research 13, no. 4 (2024): 353–66. https://doi.org/10.12651/JSR.2024.13.4.353.

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Jo, Jung-Hun, Kim, Seung-Bum, Im, Ji-Eun, Im, Se-Yoon Chun and Wan-Taek (2024): Description of 41 unrecorded bacterial species in Korea, isolated from freshwater in 2021. Journal of Species Research 13 (4): 353-366, DOI: 10.12651/JSR.2024.13.4.353

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Wang, Yong, Hong-Yu Bi, Hua-Guan Chen, Peng-Fei Zheng, Ying-Li Zhou, and Jiang-Tao Li. "Metagenomics Reveals Dominant Unusual Sulfur Oxidizers Inhabiting Active Hydrothermal Chimneys From the Southwest Indian Ridge." Frontiers in Microbiology 13 (May 25, 2022). http://dx.doi.org/10.3389/fmicb.2022.861795.

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The deep-sea hydrothermal vents (DSHVs) in the Southwest Indian Ridge (SWIR) are formed by specific geological settings. However, the community structure and ecological function of the microbial inhabitants on the sulfide chimneys of active hydrothermal vents remain largely unknown. In this study, our analyses of 16S rRNA gene amplicons and 16S rRNA metagenomic reads showed the dominance of sulfur-oxidizing Ectothiorhodospiraceae, Thiomicrorhabdus, Sulfurimonas, and Sulfurovum on the wall of two active hydrothermal chimneys. Compared with the inactive hydrothermal sediments of SWIR, the active

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Shulga, Natalia, Sergey Abramov, Alexandra Klyukina, Konstantin Ryazantsev, and Sergey Gavrilov. "Fast-growing Arctic Fe–Mn deposits from the Kara Sea as the refuges for cosmopolitan marine microorganisms." Scientific Reports 12, no. 1 (2022). http://dx.doi.org/10.1038/s41598-022-23449-6.

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AbstractThe impact of biomineralization and redox processes on the formation and growth of ferromanganese deposits in the World Ocean remains understudied. This problem is particularly relevant for the Arctic marine environment where sharp seasonal variations of temperature, redox conditions, and organic matter inflow significantly impact the biogenic and abiotic pathways of ferromanganese deposits formation. The microbial communities of the fast-growing Arctic Fe–Mn deposits have not been reported so far. Here, we describe the microbial diversity, structure and chemical composition of nodules

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Sun, Yanchen, Yongchao Yin, Guang He, et al. "pH selects for distinct N2O-reducing microbiomes in tropical soil microcosms." ISME Communications, May 8, 2024. http://dx.doi.org/10.1093/ismeco/ycae070.

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Abstract Nitrous oxide (N2O), a greenhouse gas with ozone destruction potential, is mitigated by the microbial reduction to dinitrogen catalyzed by N2O reductase (NosZ). Bacteria with NosZ activity have been studied at circumneutral pH but the microbiology of low pH N2O reduction has remained elusive. Acidic (pH &lt; 5) tropical forest soils were collected in the Luquillo Experimental Forest in Puerto Rico, and microcosms maintained with low (0.02 mM) and high (2 mM) N2O assessed N2O reduction at pH 4.5 and 7.3. All microcosms consumed N2O, with lag times of up to 7 months observed in micr

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Quintanilla, Elena, Clara F. Rodrigues, Isabel Henriques, and Ana Hilário. "Microbial Associations of Abyssal Gorgonians and Anemones (>4,000 m Depth) at the Clarion-Clipperton Fracture Zone." Frontiers in Microbiology 13 (March 30, 2022). http://dx.doi.org/10.3389/fmicb.2022.828469.

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Deep coral-dominated communities play paramount roles in benthic environments by increasing their complexity and biodiversity. Coral-associated microbes are crucial to maintain fitness and homeostasis at the holobiont level. However, deep-sea coral biology and their associated microbiomes remain largely understudied, and less from remote and abyssal environments such as those in the Clarion-Clipperton Fracture Zone (CCZ) in the tropical Northeast (NE) Pacific Ocean. Here, we study microbial-associated communities of abyssal gorgonian corals and anemones (&gt;4,000 m depth) in the CCZ; an a

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Town, Jennifer, Min Yu, R. L. Lemke, and Bobbi L. Helgason. "Land use in the Prairie Pothole Region influences the soil bacterial community composition and relative abundance of nitrogen cycling genes." Canadian Journal of Soil Science, May 2, 2023. http://dx.doi.org/10.1139/cjss-2022-0121.

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The undulating topography of Prairie Pothole Region of North America creates spatial and temporal variability in soil moisture and nutrient levels, affecting microbial community processes and GHG emissions. By identifying differences in soil bacterial and archaeal community composition and the abundance of nitrogen cycling genes in permanent cover vs. annual crop land over two growing seasons (2017 and 2018), we were able to assess the effects of topography and land use on the functional capacity of the soil microbiome. Permanent grassland cover was associated with higher bacterial diversity i

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Guo, Jinmei, Jianfeng Li, Shuqing Zhang, and Ping Chen. "Study on the soil microbial community structure of the Rhizosphere of Camellia sinensis L. in Anping Village, Kaiyang County, Guizhou Province." Annals of Microbiology 73, no. 1 (2023). http://dx.doi.org/10.1186/s13213-023-01742-7.

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Abstract Background To determine the differences in the microbial communities in the Camellia sinensis L. hairy root, lateral root, and main root rhizospheres in Anping Village, Kaiyang County, Guizhou Province, the community structure, diversity, and main dominant species of bacteria and fungi in different parts of the soil were analyzed by ITS and 16S sequencing. Results In the rhizosphere soil of the main root, lateral root, and hairy root of Camellia sinensis L., there were significant differences in the diversity and richness of the bacterial and fungal communities. The bacterial diversit

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Salonen, Iines S., Panagiota-Myrsini Chronopoulou, Hidetaka Nomaki, Dewi Langlet, Masashi Tsuchiya, and Karoliina A. Koho. "16S rRNA Gene Metabarcoding Indicates Species-Characteristic Microbiomes in Deep-Sea Benthic Foraminifera." Frontiers in Microbiology 12 (July 27, 2021). http://dx.doi.org/10.3389/fmicb.2021.694406.

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Foraminifera are unicellular eukaryotes that are an integral part of benthic fauna in many marine ecosystems, including the deep sea, with direct impacts on benthic biogeochemical cycles. In these systems, different foraminiferal species are known to have a distinct vertical distribution, i.e., microhabitat preference, which is tightly linked to the physico-chemical zonation of the sediment. Hence, foraminifera are well-adapted to thrive in various conditions, even under anoxia. However, despite the ecological and biogeochemical significance of foraminifera, their ecology remains poorly unders

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Vasileiadis, S., E. Puglisi, E. S. Papadopoulou, et al. "Blame It on the Metabolite: 3,5-Dichloroaniline Rather than the Parent Compound Is Responsible for the Decreasing Diversity and Function of Soil Microorganisms." Applied and Environmental Microbiology 84, no. 22 (2018). http://dx.doi.org/10.1128/aem.01536-18.

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ABSTRACTPesticides are key stressors of soil microorganisms with reciprocal effects on ecosystem functioning. These effects have been mainly attributed to the parent compounds, while the impact of their transformation products (TPs) has been largely overlooked. We assessed in a meadow soil (soil A) the transformation of iprodione and its toxicity in relation to (i) the abundance of functional microbial groups, (ii) the activity of key microbial enzymes, and (iii) the diversity of bacteria, fungi, and ammonia-oxidizing microorganisms (AOM) using amplicon sequencing. 3,5-Dichloroaniline (3,5-DCA

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Araujo, Maicon, Fernando Rossi, Amanda Bendia, et al. "Shotgun metagenomics from Monte Cristo cave (Brazil) reveals microbial metabolic potential related to iron and manganese biogeochemical cycles." ARPHA Conference Abstracts 6 (October 13, 2023). http://dx.doi.org/10.3897/aca.6.e108139.

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Caves are among the most singular and understudied environments on Earth. Due to the harsh conditions observed in many caves, including scarcity of nutrients and low levels of light, these ecosystems are considered extreme environments (Gabriel and Northup 2012). Therefore, it may be worth paying special attention to the microbial communities existing in these unique systems. Previously, it has been suggested that the high levels of Manganese (Mn) and Iron (Fe) at Lechuguilla and Spider Caves in the United States may influence their microbial community structure in different ways (Northup et a

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