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Relevant bibliographies by topics / Insect genomes

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Academic literature on the topic 'Insect genomes'

Author: Grafiati

Published: 4 June 2021

Last updated: 17 February 2022

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Journal articles on the topic "Insect genomes"

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Hotaling, Scott, Joanna L. Kelley, and Paul B. Frandsen. "Aquatic Insects Are Dramatically Underrepresented in Genomic Research." Insects 11, no. 9 (2020): 601. http://dx.doi.org/10.3390/insects11090601.

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Aquatic insects comprise 10% of all insect diversity, can be found on every continent except Antarctica, and are key components of freshwater ecosystems. However, aquatic insect genome biology lags dramatically behind that of terrestrial insects. If genomic effort was spread evenly, one aquatic insect genome would be sequenced for every ~9 terrestrial insect genomes. Instead, ~24 terrestrial insect genomes have been sequenced for every aquatic insect genome. This discrepancy is even more dramatic if the quality of genomic resources is considered; for instance, while no aquatic insect genome ha

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Feyereisen, R. "Evolution of insect P450." Biochemical Society Transactions 34, no. 6 (2006): 1252–55. http://dx.doi.org/10.1042/bst0341252.

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The first fully sequenced insect genomes were those of the fruitfly and the mosquito, both from the order Diptera. Now, with an increasing number and diversity of insect genomes becoming available, the diversity of insect P450 genes can be better appreciated and tentative ideas about the evolution of the CYP (cytochrome P450) superfamily in insects can be proposed. There are four large clades of insect P450 genes that existed before the divergence of the class Insecta and that are also represented by CYP families in vertebrates: the CYP2 clade, the CYP3 clade, the CYP4 clade and the mitochondr

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Robertson, Hugh M. "Insect Genomes." American Entomologist 51, no. 3 (2005): 166–73. http://dx.doi.org/10.1093/ae/51.3.166.

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Karpe, Snehal Dilip, Vikas Tiwari, and Sowdhamini Ramanathan. "InsectOR—Webserver for sensitive identification of insect olfactory receptor genes from non-model genomes." PLOS ONE 16, no. 1 (2021): e0245324. http://dx.doi.org/10.1371/journal.pone.0245324.

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Insect Olfactory Receptors (ORs) are diverse family of membrane protein receptors responsible for most of the insect olfactory perception and communication, and hence they are of utmost importance for developing repellents or pesticides. Accurate gene prediction of insect ORs from newly sequenced genomes is an important but challenging task. We have developed a dedicated webserver, ‘insectOR’, to predict and validate insect OR genes using multiple gene prediction algorithms, accompanied by relevant validations. It is possible to employ this server nearly automatically and perform rapid predict

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Peccoud, Jean, Vincent Loiseau, Richard Cordaux, and Clément Gilbert. "Massive horizontal transfer of transposable elements in insects." Proceedings of the National Academy of Sciences 114, no. 18 (2017): 4721–26. http://dx.doi.org/10.1073/pnas.1621178114.

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Horizontal transfer (HT) of genetic material is central to the architecture and evolution of prokaryote genomes. Within eukaryotes, the majority of HTs reported so far are transfers of transposable elements (TEs). These reports essentially come from studies focusing on specific lineages or types of TEs. Because of the lack of large-scale survey, the amount and impact of HT of TEs (HTT) in eukaryote evolution, as well as the trends and factors shaping these transfers, are poorly known. Here, we report a comprehensive analysis of HTT in 195 insect genomes, representing 123 genera and 13 of the 2

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Rosenfeld, Jeffrey A., Jonathan Foox, and Rob DeSalle. "Insect genome content phylogeny and functional annotation of core insect genomes." Molecular Phylogenetics and Evolution 97 (April 2016): 224–32. http://dx.doi.org/10.1016/j.ympev.2015.10.014.

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Van Dam, Matthew H., Analyn Anzano Cabras, James B. Henderson, et al. "The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution." PLOS Genetics 17, no. 8 (2021): e1009745. http://dx.doi.org/10.1371/journal.pgen.1009745.

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Patterns of genomic architecture across insects remain largely undocumented or decoupled from a broader phylogenetic context. For instance, it is unknown whether translocation rates differ between insect orders. We address broad scale patterns of genome architecture across Insecta by examining synteny in a phylogenetic framework from open-source insect genomes. To accomplish this, we add a chromosome level genome to a crucial lineage, Coleoptera. Our assembly of the Pachyrhynchus sulphureomaculatus genome is the first chromosome scale genome for the hyperdiverse Phytophaga lineage and currentl

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Gregory, T. Ryan. "Genome size of the northern walkingstick, Diapheromera femorata (Phasmida: Heteronemiidae)." Canadian Journal of Zoology 80, no. 7 (2002): 1303–5. http://dx.doi.org/10.1139/z02-106.

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The haploid genome size (C value) of the northern walkingstick, Diapheromera femorata (Say), was estimated to be 1C = 2.55 pg using Feulgen image-analysis densitometry of haemocyte and sperm nuclei. This relatively large genome is similar in size to the genomes of the few other phasmids studied so far, and is consistent with hypotheses regarding an upper limit to the size of many insect genomes imposed by the process of metamorphosis, which is relaxed among hemimetabolous orders. Comments on sperm morphology in D. femorata are also provided, and another possible relationship between genome siz

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Li, F., X. Zhao, M. Li, et al. "Insect genomes: progress and challenges." Insect Molecular Biology 28, no. 6 (2019): 739–58. http://dx.doi.org/10.1111/imb.12599.

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Saha, Surya, Amanda M. Cooksey, Anna K. Childers, Monica F. Poelchau, and Fiona M. McCarthy. "Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes." Insects 12, no. 8 (2021): 748. http://dx.doi.org/10.3390/insects12080748.

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Genome sequencing of a diverse array of arthropod genomes is already underway, and these genomes will be used to study human health, agriculture, biodiversity, and ecology. These new genomes are intended to serve as community resources and provide the foundational information required to apply ‘omics technologies to a more diverse set of species. However, biologists require genome annotation to use these genomes and derive a better understanding of complex biological systems. Genome annotation incorporates two related, but distinct, processes: Demarcating genes and other elements present in ge

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Dissertations / Theses on the topic "Insect genomes"

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Waterhouse, Robert Michael. "Computational comparative analysis of insect genomes." Thesis, Imperial College London, 2009. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.512005.

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Ziesmann, Tanja [Verfasser]. "Non-coding RNAs and Conserved Non-coding Elements in Insect Genomes / Tanja Ziesmann." Bonn : Universitäts- und Landesbibliothek Bonn, 2019. http://d-nb.info/1198933461/34.

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Mesilaakso, Lauri. "Bioinformatic approaches for detecting homologous genes in the genomes of non-model organisms : A case study of wing development genes in insect genomes." Thesis, Uppsala universitet, Evolutionsbiologi, 2019. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-398072.

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Identifying homologous genes, that is genes from a common ancestor, is important in comparative genomic studies for understanding gene annotation and the predicted function of a gene. Several pieces of software, of which the most well-known is BLAST, have been developed for identifying homologues, but this can be challenging in non-model organisms where sometimes poor quality of genome assemblies and lack of annotation make it difficult to robustly identify homologues. The aim of this project was to build a bioinformatic framework for homology detection using genomes from non-model organisms.

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Yeoh, Joseph Guan Chong. "Artificial horizontal transfer of retroposons." Thesis, Queen Mary, University of London, 2014. http://qmro.qmul.ac.uk/xmlui/handle/123456789/8972.

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Many factors may explain why certain transposable elements (TEs) spread in some species and not others. On the one hand, they include processes that affect the rate of transposition, such as differences in the regulation of expression; on the other hand, they include characteristics of a genome that affect the consequences of transposition. In particular genome size may have an effect: a genome that is large due to non-essential repetitive DNA may be permissive for TE movement, as insertion events are less likely to be deleterious. Genome size may also help explain the pattern of TE distributi

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Chauhan, Ritika. "Bioinformatics of next generation sequencing approaches : using 454 and Illumina data to look at insect genomes and transcriptomes." Thesis, University of Exeter, 2013. http://hdl.handle.net/10871/10123.

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By providing a rapid and cost effective means of generating sequencing resources for almost any organism, ‘Next generation sequencing technologies’ (NGS) have great potential to help address numerous gene and genome level questions in molecular biology. Progress in NGS is exponentially increasing sequence throughput and large scale studies in the genomics/transcriptomics of non-model organisms are becoming a reality. Therefore the main focus of the work presented in this thesis is on the analysis of the large scale non-model insect datasets generated by NGS technologies and their potential to

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Thézé, Julien. "Diversification et adaptation génomique des virus entomopathogènes." Thesis, Tours, 2013. http://www.theses.fr/2013TOUR4006.

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À différentes échelles de temps, le but de ma thèse a été de comprendre l'évolution des virus entomopathogènes à travers l’étude de la diversification et de l’adaptation génomique de grands virus à ADN d’insectes. Dans un premier temps, j’ai pu estimer les âges de diversifications des baculovirus et des nudivirus, et proposer un scénario de coévolution à long terme entre ces virus et leurs hôtes insectes. Puis, me plaçant sur une échelle de temps moindre, j’ai montré que les hôtes insectes sont le facteur principal de la diversification des baculovirus, et de façon surprenante, j’ai également

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Hunt, Brendan G. "Molecular evolution in the social insects." Diss., Georgia Institute of Technology, 2011. http://hdl.handle.net/1853/43655.

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Social insects are ecologically dominant because of their specialized, cooperative castes. Reproductive queens lay eggs, while workers take part in brood rearing, nest defense, and foraging. These cooperative castes are a prime example of phenotypic plasticity, whereby a single genetic code gives rise to variation in form and function based on environmental differences. Thus, social insects are well suited for studying mechanisms which give rise to and maintain phenotypic plasticity. At the molecular level, phenotypic plasticity coincides with the differential expression of genes. This d

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Klasson, Lisa. "Genome Evolution in Maternally Inherited Insect Endosymbionts." Doctoral thesis, Uppsala University, Department of Evolution, Genomics and Systematics, 2005. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-5885.

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<p>Symbiosis is a widely common phenomenon in nature and has undoubtedly contributed to the evolution of all organisms on earth. Symbiotic associations can be of varying character, such as parasitic or mutualistic, but all imply a close relationship. To study the evolution of genomes of insect endosymbionts, we have sequenced the genomes of the mutualist <i>Buchnera aphidicola</i> from the aphid <i>Schizaphis graminum</i> (Sg) and the reproductive manipulator <i>Wolbachia pipientis</i> strain wRi from <i>Drosophila simulans</i> that show strikingly different evolutionary patterns. </p><p>The c

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Ricci, Andrea <1972&gt. "Mitochondrial Genomics: structure, inheritance and phylogenetic utility of the Mitochondrial genome in Bivalvia and Insecta." Doctoral thesis, Alma Mater Studiorum - Università di Bologna, 2009. http://amsdottorato.unibo.it/1875/.

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This PhD Thesis is the result of my research activity in the last three years. My main research interest was centered on the evolution of mitochondrial genome (mtDNA), and on its usefulness as a phylogeographic and phylogenetic marker at different taxonomic levels in different taxa of Metazoa. From a methodological standpoint, my main effort was dedicated to the sequencing of complete mitochondrial genomes, and the approach to whole-genome sequencing was based on the application of Long-PCR and shotgun sequences. Moreover, this research project is a part of a bigger sequencing project of

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Milani, Diogo. "Organização de DNAs satélites no genoma do gafanhoto Abracris flavolineata com ênfase nos cromossomos supranumerários : uma abordagem estrutural, funcional e evolutiva /." Rio Claro, 2017. http://hdl.handle.net/11449/149797.

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Orientador: Diogo Cavalcanti Cabral de Mello<br>Banca: Ana Paula de Moraes<br>Banca: Clarisse Palma da Silva<br>Resumo: DNAs satélites (DNAsat) são sequências usualmente repetidas centenas a milhares de vezes arranjadas consecutivamente uma à outra, enriquecidas geralmente na heterocromatina em regiões específicas ou cromossomos, tais como os cromossomos B. Neste trabalho, isolamos o primeiro DNAsat no gafanhoto Abracris flavolineata, nomeado AflaSAT-1. A sequência foi caracterizada integrando abordagem molecular, genômica e citogenética objetivando compreender a organização estrutural, evoluç

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Books on the topic "Insect genomes"

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Nōrin Suisan Gijutsu Kaigi. Jimukyoku. Dōbutsu genomu o katsuyōshita shinshijō sōshutsu no tame no gijutsu kaihatsu: Konchū genomu jōhō o katsuyōshita shinjuyō sōzō no tame no kenkyū = Integrated research project for plant, insect and animal using genome technology : basic insect genome research for creating and enhancing market demand. Nōrin Suisanshō Nōrin Suisan Gijutsu Kaigi Jimukyoku, 2013.

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Nōrin Suisan Gijutsu Kaigi. Jimukyoku. Dōbutsu genomu o katsuyōshita shinshijō sōshutsu no tame no gijutsu kaihatsu: Dōbutsu genomu jōhō o katsuyōshita shinjuyō sōzō no tame no kenkyū = Integrated research project for plant, insect and animal using genome technology : basic animal genome research for creating and enhancing market demand. Nōrin Suisanshō Nōrin Suisan Gijutsu Kaigi Jimukyoku, 2013.

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Brown, Susan J., and Michael E. Pfrender, eds. Insect Genomics. Springer New York, 2019. http://dx.doi.org/10.1007/978-1-4939-8775-7.

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Raman, Chandrasekar, Marian R. Goldsmith, and Tolulope A. Agunbiade, eds. Short Views on Insect Genomics and Proteomics. Springer International Publishing, 2015. http://dx.doi.org/10.1007/978-3-319-24235-4.

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Raman, Chandrasekar, Marian R. Goldsmith, and Tolulope A. Agunbiade, eds. Short Views on Insect Genomics and Proteomics. Springer International Publishing, 2016. http://dx.doi.org/10.1007/978-3-319-24244-6.

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Canadian Forest Genomics Symposium (1st 2006 Ottawa, Ont.). Genomics for future forests: First Canadian Forest Genomics Symposium, 2-3 September 2004, Ottawa, Ontario, Canada : symposium report. Natural Resources Canada, Canadian Forest Service, Science and Programs Branch, 2006.

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Bunshi konchūgaku: Posuto genomu no konchū kenkyū = Molecular entomology. Kyōritsu Shuppan, 2009.

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Maroni, Gustavo. An atlas of Drosophila genes: Sequences and molecular features. Oxford University Press, 1993.

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G, Golic Kent, and Hawley R. Scott, eds. Drosophila: A laboratory handbook. 2nd ed. Cold Spring Harbor Laboratory Press, 2005.

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Juergen, Gadau, and Fewell Jennifer, eds. Organization of insect societies: From genome to sociocomplexity. Harvard University Press, 2009.

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Book chapters on the topic "Insect genomes"

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Severson, David W. "RFLP analysis of insect genomes." In The Molecular Biology of Insect Disease Vectors. Springer Netherlands, 1997. http://dx.doi.org/10.1007/978-94-009-1535-0_26.

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Zheng, Liangbiao. "Microsatellite mapping of insect genomes." In The Molecular Biology of Insect Disease Vectors. Springer Netherlands, 1997. http://dx.doi.org/10.1007/978-94-009-1535-0_27.

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Butron, A., L. F. Samayoa, R. Santiago, B. Ordás, and R. A. Malvar. "Genomics of Insect Resistance." In Compendium of Plant Genomes. Springer International Publishing, 2018. http://dx.doi.org/10.1007/978-3-319-97427-9_11.

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Gatzmann, Fanny, and Frank Lyko. "Whole-Genome Bisulfite Sequencing for the Methylation Analysis of Insect Genomes." In Methods in Molecular Biology. Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-8775-7_11.

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Raborn, R. Taylor, and Volker P. Brendel. "Using RAMPAGE to Identify and Annotate Promoters in Insect Genomes." In Methods in Molecular Biology. Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-8775-7_9.

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Jehle, J. A. "Transmission of insect transposons into baculovirus genomes: An unusual host-pathogen interaction." In Transgenic Organisms. Birkhäuser Basel, 1996. http://dx.doi.org/10.1007/978-3-0348-9177-6_7.

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Bentur, Jagadish S., R. M. Sundaram, Satendra Kumar Mangrauthia, and Suresh Nair. "Molecular Approaches for Insect Pest Management in Rice." In Rice Improvement. Springer International Publishing, 2021. http://dx.doi.org/10.1007/978-3-030-66530-2_11.

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AbstractThis chapter focuses on the progress made in using molecular tools in understanding resistance in rice to insect pests and breeding rice for multiple and durable insect resistance. Currently, molecular markers are being extensively used to tag, map, introgress, and clone plant resistance genes against gall midge, planthoppers, and leafhoppers. Studies on cloned insect resistance genes are leading to a better understanding of plant defense against insect pests under different feeding guilds. While marker-assisted breeding is successfully tackling problems in durable and multiple pest resistance in rice, genomics of plants and insects has identified RNAi-based gene silencing as an alternative approach for conferring insect resistance. The use of these techniques in rice is in the developmental stage, with the main focus on brown planthopper and yellow stem borer. CRISPR-based genome editing techniques for pest control in plants has just begun. Insect susceptibility genes (negative regulators of resistance genes) in plants are apt targets for this approach while gene drive in insect populations, as a tool to study rice-pest interactions, is another concept being tested. Transformation of crop plants with diverse insecticidal genes is a proven technology with potential for commercial success. Despite advances in the development and testing of transgenic rice for insect resistance, no insect-resistant rice cultivar is now being commercially cultivated. An array of molecular tools is being used to study insect-rice interactions at transcriptome, proteome, metabolome, mitogenome, and metagenome levels, especially with reference to BPH and gall midge, and such studies are uncovering new approaches for insect pest management and for understanding population genetics and phylogeography of rice pests. Thus, it is evident that the new knowledge being gained through these studies has provided us with new tools and information for facing future challenges. However, what is also evident is that our attempts to manage rice pests cannot be a one-time effort but must be a continuing one.

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Kondo, Hideki, Sotaro Chiba, and Nobuhiro Suzuki. "Detection and Analysis of Non-retroviral RNA Virus-Like Elements in Plant, Fungal, and Insect Genomes." In Methods in Molecular Biology. Springer New York, 2014. http://dx.doi.org/10.1007/978-1-4939-1743-3_7.

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McKay, Daniel J. "Using Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE) to Identify Functional Regulatory DNA in Insect Genomes." In Methods in Molecular Biology. Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-8775-7_8.

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Peck, Stewart B., Carol C. Mapes, Netta Dorchin, et al. "Genomes of Insects." In Encyclopedia of Entomology. Springer Netherlands, 2008. http://dx.doi.org/10.1007/978-1-4020-6359-6_1068.

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Conference papers on the topic "Insect genomes"

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Li, Fei. "InsectBase: A resource for insect genomes and transcriptomes." In 2016 International Congress of Entomology. Entomological Society of America, 2016. http://dx.doi.org/10.1603/ice.2016.113615.

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Liu, Sijun. "Deep sequencing data reveal viral sequences integrated into insect genomes." In 2016 International Congress of Entomology. Entomological Society of America, 2016. http://dx.doi.org/10.1603/ice.2016.93823.

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Cristea, Paul Dan, Rodica Aurora Tuduce, and Jan Cornelis. "Inserts in prokaryote genomes." In 2008 8th IEEE International Conference on Bioinformatics and BioEngineering. IEEE, 2008. http://dx.doi.org/10.1109/bibe.2008.4696673.

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"Expression of DNA reparation genes in anhydrobiotic insect Polypedilum vanderplanki." In Bioinformatics of Genome Regulation and Structure/ Systems Biology. institute of cytology and genetics siberian branch of the russian academy of science, Novosibirsk State University, 2020. http://dx.doi.org/10.18699/bgrs/sb-2020-045.

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Cristea, Paul Dan, and Rodica Aurora Tuduce. "Analysis of inserts in prokaryote genomes." In Biomedical Optics (BiOS) 2008, edited by Daniel L. Farkas, Dan V. Nicolau, and Robert C. Leif. SPIE, 2008. http://dx.doi.org/10.1117/12.761004.

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Halfon, Marc S. "Regulatory genomics of vector insects." In 2016 International Congress of Entomology. Entomological Society of America, 2016. http://dx.doi.org/10.1603/ice.2016.94241.

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Nosil, Patrik. "Ecological genomics of speciation in Timema stick insects." In 2016 International Congress of Entomology. Entomological Society of America, 2016. http://dx.doi.org/10.1603/ice.2016.107583.

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Bennett, Gordon M. "Genome evolution and phylogenomics of heritable bacterial symbionts in insects." In 2016 International Congress of Entomology. Entomological Society of America, 2016. http://dx.doi.org/10.1603/ice.2016.95552.

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Allen, Julie. "Genomic tools for all entomologists: aTRAM and its use in insect phylogenomics." In 2016 International Congress of Entomology. Entomological Society of America, 2016. http://dx.doi.org/10.1603/ice.2016.108190.

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Orchard, Ian. "Advances in insect neuroendocrinology/physiology through genomics and peptidomics: Diuresis inRhodnius prolixus." In 2016 International Congress of Entomology. Entomological Society of America, 2016. http://dx.doi.org/10.1603/ice.2016.91458.

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Reports on the topic "Insect genomes"

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Hellström, Lisa, and Linda Beckman. "Det är lite mer så här mainstream att ha psykisk ohälsa" : Samtal om ungas behov och livsfärdigheter. Malmö universitet, 2021. http://dx.doi.org/10.24834/isbn.9789178771691.

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Denna rapport ingår i forskningsprojektet Att skapa goda livsfärdigheter bland unga. Den första delrapporten var en nationell och internationell kartläggning över initiativ och insatser för att främja psykisk hälsa bland unga. Bland insatser som verkar mer lovande – och till synes har goda möjligheter att göra skillnad för ungas psykiska hälsa - framträder insatser vars syfte är att höja kunskapen om psykisk hälsa bland unga och vuxna. Ökad kunskap om psykisk hälsa har visat sig vara ett viktigt verktyg för att utveckla färdigheter i hur man tolkar och förstår sina egna känslor och sin kropp o

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