Academic literature on the topic 'Intertype Limited'

Research Highlights: We proposed new methodologies for the spatial analysis of regeneration processes and compared with existing approaches. Background and Objectives: Identifying the spatial relationship between adult trees and new cohorts is fundamental to understanding the dynamics of regeneration and therefore helps us to optimize the stand density and natural regeneration when undertaking regeneration fellings. Most of the statistical approaches analyzing the spatial dependence between adult trees and new individuals (seedlings or saplings) require a complete census and mapping of all individuals. However, approaches considering individuals grouped into sampling points or subplots (i.e., density data) are limited. In this study, we reviewed and compared approaches (intertype point pattern analyses and a generalized additive model) to describe the spatial relationship between adult trees and density regeneration in a Pinus sylvestris L. monospecific stand in Spain. We also proposed a new approach (intertype mark variance function) to disentangle the effect of the tree-size on sapling density and the effect of the spatial pattern. Materials and Methods: To this end, we used a half-hectare plot in which all the individuals of P. sylvestris have been mapped and measured. Results: Our results indicated that sapling distribution was related to distance from the adult trees, thus displaying distance-dependence patterns, but it was not related to the size of the adult trees. The intertype mark correlation function was an useful tool to distinguish the effect of the marks (sapling density and tree size) from the effect of the spatial pattern of the classes (trees cohorts in our case). Conclusions: The largest number of saplings was found with increased distance between adult trees (>11 m), and the generalized additive model may be useful to explain spatial relationships between adult trees and regenerating cohorts when other measured biotic variables (e.g., soil stoniness, etc.) and repeated measurements are available.

Abstract. The endemic argan tree (Argania spinosa) populations in southern Morocco are highly degraded due to overbrowsing, illegal firewood extraction and the expansion of intensive agriculture. Bare areas between the isolated trees increase due to limited regrowth; however, it is unknown if the trees influence the soil of the intertree areas. Hypothetically, spatial differences in soil parameters of the intertree area should result from the translocation of litter or soil particles (by runoff and erosion or wind drift) from canopy-covered areas to the intertree areas. In total, 385 soil samples were taken around the tree from the trunk along the tree drip line (within and outside the tree area) and the intertree area between two trees in four directions (upslope, downslope and in both directions parallel to the slope) up to 50 m distance from the tree. They were analysed for gravimetric soil water content, pH, electrical conductivity, percolation stability, total nitrogen content (TN), content of soil organic carbon (SOC) and C/N ratio. A total of 74 tension disc infiltrometer experiments were performed near the tree drip line, within and outside the tree area, to measure the unsaturated hydraulic conductivity. We found that the tree influence on its surrounding intertree area is limited, with, e.g., SOC and TN content decreasing significantly from tree trunk (4.4 % SOC and 0.3 % TN) to tree drip line (2.0 % SOC and 0.2 % TN). However, intertree areas near the tree drip line (1.3 % SOC and 0.2 % TN) differed significantly from intertree areas between two trees (1.0 % SOC and 0.1 % TN) yet only with a small effect. Trends for spatial patterns could be found in eastern and downslope directions due to wind drift and slope wash. Soil water content was highest in the north due to shade from the midday sun; the influence extended to the intertree areas. The unsaturated hydraulic conductivity also showed significant differences between areas within and outside the tree area near the tree drip line. This was the case on sites under different land usages (silvopastoral and agricultural), slope gradients or tree densities. Although only limited influence of the tree on its intertree area was found, the spatial pattern around the tree suggests that reforestation measures should be aimed around tree shelters in northern or eastern directions with higher soil water content or TN or SOC content to ensure seedling survival, along with measures to prevent overgrazing.

ABSTRACTHuman mastadenovirus D(HAdV-D) is exceptionally rich in type among the seven human adenovirus species. This feature is attributed to frequent intertypic recombination events that have reshuffled orthologous genomic regions between different HAdV-D types. However, this trend appears to be paradoxical, as it has been demonstrated that the replacement of some of the interacting proteins for a specific function with other orthologues causes malfunction, indicating that intertypic recombination events may be deleterious. In order to understand why the paradoxical trend has been possible in HAdV-D evolution, we conducted an interregional coevolution analysis between different genomic regions of 45 different HAdV-D types and found that ca. 70% of the genome has coevolved, even though these are fragmented into several pieces via short intertypic recombination hot spot regions. Since it is statistically and biologically unlikely that all of the coevolving fragments have synchronously recombined between different genomes, it is probable that these regions have stayed in their original genomes during evolution as a platform for frequent intertypic recombination events in limited regions. It is also unlikely that the same genomic regions have remained almost untouched during frequent recombination events, independently, in all different types, by chance. In addition, the coevolving regions contain the coding regions of physically interacting proteins for important functions. Therefore, the coevolution of these regions should be attributed at least in part to natural selection due to common biological constraints operating on all types, including protein-protein interactions for essential functions. Our results predict additional unknown protein interactions.IMPORTANCEHuman mastadenovirus D, an exceptionally type-rich human adenovirus species and causative agent of different diseases in a wide variety of tissues, including that of ocular region and digestive tract, as well as an opportunistic infection in immunocompromised patients, is known to have highly diverged through frequent intertypic recombination events; however, it has also been demonstrated that the replacement of a component protein of a multiprotein system with a homologous protein causes malfunction. The present study solved this apparent paradox by looking at which genomic parts have coevolved using a newly developed method. The results revealed that intertypic recombination events have occurred in limited genomic regions and been avoided in the genomic regions encoding proteins that physically interact for a given function. This approach detects purifying selection against recombination events causing the replacement of partial components of multiprotein systems and therefore predicts physical and functional interactions between different proteins and/or genomic elements.

Root-feeding insects are known to vector black-stain root disease in Douglas-fir (Pseudotsugamenziesii (Mirb.) Franco). Intertree spread through root grafts and limited growth through soil is demonstrated as well. In potted seedling experiments, contact between roots of inoculated and healthy seedlings was either allowed or prevented. Transmission occurred in both treatments but was significantly more frequent (P = 0.01) when intertree root contact was allowed. In the root-contact treatment, 67% of the receptor seedlings died as a result of successful transmission. In the noncontact treatment, 35% of the receptor seedlings died. Evidence points to wounds on fine roots as principal infection courts. Root graft transmission of C. wageneri was verified through field excavation and microscopic examination of 23 root grafts from three widely separated sites.

Carbon nanotubes (CNTs) have received much recent research interest for thermal management applications due to their extremely high thermal conductivity. An advanced thermal interface structure made of two opposing, partially overlapped CNT arrays is designed for thermally connecting two contact surfaces. The performance of this interface structure is thermally characterized using diffraction-limited infrared microscopy. Significant temperature discontinuities are found at the CNT-CNT contact region, which indicates a large thermal resistance between CNTs. Due to this intertube resistance, the thermal performance of the CNT-based interface structure is far below expectation (with a thermal resistance value about 3.8×10−4Km2∕W).

The overall response of all lifelines was good although there was some significant damage. In the power system there was significant damage to 500 kV circuit breakers at two substations, some other minor substation damage, and some damage to feeders in the distribution system. The substation damage did put a segment of one of the AC Pacific Interties out of service for a couple of days but the remaining intertie was able to carry the load. The loss of feeder lines caused local disruption of power for up to 5 hours. In water and sewage systems two 8 inch transit water lines broke in Morgan Hill and a break in an 8 inch pipe to a 350,000 gallon tank caused a large water loss. Five 6 inch water line couplings disengaged. There were numerous water service connection failures in the high damage area. There was no significant damage to communication systems but there was a significant downgrade in the quality of service due to system overload. Calls from outside the area were limited by AT&T. Damage to highway systems was limited to that caused by a rock slide which blocked E. Dunne Avenue near the Anderson Reservoir and damaged a nearby bridge over the reservoir. One bridge span moved one foot near an abutment and caused the adjacent pier to move out of plumb by almost one foot. The road surface on the crest of the Anderson Dam was cracked but there was no damage to the dam. In the natural gas system there was no damage to the utilities part of the system. A large fire in San Jose was caused by a gas leak in piping to a gas fired industrial heater. There was an explosion and fire in a mobile home and numerous leaks associated with toppled water heaters. There were numerous leaks beyond service connections to homes in the high damage area.

ABSTRACT Successful implementation of the global poliomyelitis eradication program raises the problem of vaccination against poliomyelitis in the posteradication era. One of the options under consideration envisions completely stopping worldwide the use of the Sabin vaccine. This strategy is based on the assumption that the natural circulation of attenuated strains and their derivatives is strictly limited. Here, we report the characterization of a highly evolved derivative of the Sabin vaccine strain isolated in a case of paralytic poliomyelitis from a 7-month-old immunocompetent baby in an apparently adequately immunized population. Analysis of the genome of this isolate showed that it is a double (type 1-type 2-type 1) vaccine-derived recombinant. The number of mutations accumulated in both the type 1-derived and type 2-derived portions of the recombinant genome suggests that both had diverged from their vaccine predecessors ∼2 years before the onset of the illness. This fact, along with other recent observations, points to the possibility of long-term circulation of Sabin vaccine strain derivatives associated with an increase in their neurovirulence. Comparison of genomic sequences of this and other evolved vaccine-derived isolates reveals some general features of natural poliovirus evolution. They include a very high preponderance and nonrandom distribution of synonymous substitutions, conservation of secondary structures of important cis-acting elements of the genome, and an apparently adaptive character of most of the amino acid mutations, with only a few of them occurring in the antigenic determinants. Another interesting feature is a frequent occurrence of tripartite intertypic recombinants with either type 1 or type 3 homotypic genomic ends.

ABSTRACTSewage surveillance in seven Italian cities between 2005 and 2008, after the introduction of inactivated poliovirus vaccination (IPV) in 2002, showed rare polioviruses, none that were wild-type or circulating vaccine-derived poliovirus (cVDPV), and many other enteroviruses among 1,392 samples analyzed. Two of five polioviruses (PV) detected were Sabin-like PV2 and three PV3, based on enzyme-linked immunosorbent assay (ELISA) and PCR results. Neurovirulence-related mutations were found in the 5′ noncoding region (5′NCR) of all strains and, for a PV2, also in VP1 region 143 (Ile > Thr). Intertypic recombination in the 3D region was detected in a second PV2 (Sabin 2/Sabin 1) and a PV3 (Sabin 3/Sabin 2). The low mutation rate in VP1 for all PVs suggests limited interhuman virus passages, consistent with efficient polio immunization in Italy. Nonetheless, these findings highlight the risk of wild or Sabin poliovirus reintroduction from abroad. Non-polio enteroviruses (NPEVs) were detected, 448 of which were coxsackievirus B (CVB) and 294 of which were echoviruses (Echo). Fifty-six NPEVs failing serological typing were characterized by sequencing the VP1 region (nucleotides [nt] 2628 to 2976). A total of 448 CVB and 294 Echo strains were identified; among those strains, CVB2, CVB5, and Echo 11 predominated. Environmental CVB5 and CVB2 strains from this study showed high sequence identity with GenBank global strains. The high similarity between environmental NPEVs and clinical strains from the same areas of Italy and the same periods indicates that environmental strains reflect the viruses circulating in the population and highlights the potential risk of inefficient wastewater treatments. This study confirmed that sewage surveillance can be more sensitive than acute flaccid paralysis (AFP) surveillance in monitoring silent poliovirus circulation in the population as well as the suitability of molecular approaches to enterovirus typing.

Enterovirus B75 (EV-B75) is a newly identified serotype of the enterovirus B species. To date, only 112 cases related to EV-B75 have been reported worldwide, and research on EV-B75 is still limited with only two full-length genome sequences available in GenBank. The present study reported seven EV-B75 sequences from a child with acute flaccid paralysis and six asymptomatic close contacts in Shigatse, Tibet. Phylogenetic analysis revealed that the Tibetan strain was possibly imported from neighboring India. Seroepidemiological analyses indicated that EV-B75 has not yet caused a large-scale epidemic in Tibet. Similarity plots and boot scanning analyses revealed frequent intertypic recombination in the non-structural region of all seven Tibet EV-B75 strains. All seven Tibetan strains were temperature-sensitive, suggesting their poor transmissibility in the environment. Overall, though the seven Tibetan strains did not cause large-scale infection, prevention and control of the novel enterovirus cannot be underestimated.