Dissertations / Theses on the topic 'Iron, structural'
Create a spot-on reference in APA, MLA, Chicago, Harvard, and other styles
Consult the top 50 dissertations / theses for your research on the topic 'Iron, structural.'
Next to every source in the list of references, there is an 'Add to bibliography' button. Press on it, and we will generate automatically the bibliographic reference to the chosen work in the citation style you need: APA, MLA, Harvard, Chicago, Vancouver, etc.
You can also download the full text of the academic publication as pdf and read online its abstract whenever available in the metadata.
Browse dissertations / theses on a wide variety of disciplines and organise your bibliography correctly.
O'Sullivan, Matthew. "Assessment procedures for structural wrought iron." Thesis, University of Manchester, 2013. https://www.research.manchester.ac.uk/portal/en/theses/assessment-procedures-for-structural-wrought-iron(d8a2b7a5-db32-48c4-8ffe-983b42e5a4d8).html.
Full textKerkar, Moussa. "A structural investigation of the passive film on iron and iron/chromium alloys." Thesis, University of Warwick, 1989. http://wrap.warwick.ac.uk/106531/.
Full textOnda, Nicolino. "Epitaxially stabilized iron-silicides : structural and electrical properties /." [S.l.] : [s.n.], 1994. http://e-collection.ethbib.ethz.ch/show?type=diss&nr=10513.
Full textLee, Dok Won. "Structural and magnetic properties of copper/iron multilayers." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 1997. http://www.collectionscanada.ca/obj/s4/f2/dsk2/ftp01/MQ44203.pdf.
Full textBrüning, Ralf. "Reversible structural relaxation in iron based metallic glasses." Thesis, McGill University, 1986. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=65539.
Full textPorter, Deborah Aitken. "Structural and magnetic study of ammonium iron halides." Thesis, University of Edinburgh, 1998. http://hdl.handle.net/1842/11274.
Full textFolgosa, Filipe dos Santos. "Structural and mechanistic studies of iron containing proteins." Doctoral thesis, FCT - UNL, 2008. http://hdl.handle.net/10362/1774.
Full textOver the last few decades a large effort has been done in the structural biochemistry field. This effort is based on the study of some proteins, namely metalloproteins, that contain cofactors and/or active sites with metal ions in their constitution. This thesis will focus on different studies performed in metalloproteins that contain non-heme iron centers. An important point is their relation to oxygen and reactive oxygen species. To perform these studies, fast kinetic techniques were used coupled to spectroscopic techniques, such as Electronic Paramagnetic Resonance (EPR), Mössbauer and UVVisible.
Fundação para a Ciência e Tecnologia (SFRH/BD/18905/2004)
Money, Victoria A. "Structural studies of iron (II) spin crossover compounds." Thesis, Durham University, 2004. http://etheses.dur.ac.uk/2987/.
Full textBeesley, Angela M. "Structural and magnetic studies on sputtered uranium / iron multilayers." Thesis, University of Liverpool, 2005. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.415747.
Full textKeep, Graham. "Structural and Functional Studies of Ferrous Iron Transporter B." Thesis, The University of Sydney, 2018. http://hdl.handle.net/2123/18969.
Full textLi, Guzhao. "Bracing design requirements for inelastic members." Access restricted to users with UT Austin EID, 2002. http://www.lib.utexas.edu/etd/r/d/2002/guzhaol022/guzhaol022.pdf#page=4.
Full textBusch, J. L. H. C. "Structural and spectroscopic studies of Desulfovibrio africanus ferrodoxin III." Thesis, University of East Anglia, 1998. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.267262.
Full textPerry, Ashlee. "Structural studies of the two iron rubredoxin of Pseudomonas oleovorans." Thesis, University of Leicester, 2001. http://hdl.handle.net/2381/29656.
Full textKobayashi, Yuka. "Structural and Functional Analysis of Iron Ion-Coordinating Cyclic Peptides." Kyoto University, 2018. http://hdl.handle.net/2433/232327.
Full textJonnalagadda, Rohan. "Structural and functional investigations of mechanisms of iron-utilizing enzymes." Thesis, Massachusetts Institute of Technology, 2020. https://hdl.handle.net/1721.1/127130.
Full textCataloged from the official PDF of thesis. Vita.
Includes bibliographical references.
Biological systems use iron as a key cofactor to catalyze a variety of difficult chemical transformations, particularly as reservoirs from which to initiate enzymatic radical chemistry. Here, I discuss efforts to study the allosteric mechanisms of an essential human iron and free radical utilizing enzyme: ribonucleotide reductase (RNR), and efforts to elucidate the radical based mechanism of isonitrile formation by an mononuclear nonheme iron(II) α-ketoglutarate dependent dioxygenase, ScoE. The first part of this thesis focuses on mononuclear nonheme iron(II) α-ketoglutarate dependent dioxygenases: enzymes which use molecular oxygen, α-ketoglutarate and a mononuclear Fe(II) cofactor to initiate substrate radical chemistry and catalyze diverse chemistries such as hydroxylations, halogenations and desaturations. Chapter 1 of this thesis describes current understanding of the mechanisms of these enzymes. Chapter 2 describes biochemical and structural efforts to determine the catalytic mechanism of one member of these enzymes: the isonitrile formation enzyme ScoE. In the chapter 3 of this thesis, I discuss the structure, function and allosteric regulation of RNR, the sole known enzyme capable of catalyzing the de novo biosynthesis of deoxyribonucleotides in all organisms for use in DNA replication and repair. Chapter 4 concerns efforts to develop a procedure for the improved recombinant protein yield of human RNR, and chapter 5 describes the development of a new liquid chromatography-tandem mass spectrometry based assay for RNR activity that we propose holds promise for simultaneous detection of RNR activity on multiple substrates.
by Rohan Jonnalagadda.
Ph. D.
Ph.D. Massachusetts Institute of Technology, Department of Biology
Liang, Shunxing. "Catalytic mechanism, multifunctionality and structural design of iron-based metallic glasses." Thesis, Edith Cowan University, Research Online, Perth, Western Australia, 2019. https://ro.ecu.edu.au/theses/2274.
Full textHe, Didi. "Structural basis for iron (II) metabolism in encapsulated ferritin-like proteins." Thesis, University of Edinburgh, 2017. http://hdl.handle.net/1842/23466.
Full textYoon, Taejin. "Functionaland structural studies of human frataxin: An iron chaperone protein for mitochondrial iron-sulfur cluster and heme biosyntheses." The Ohio State University, 2005. http://rave.ohiolink.edu/etdc/view?acc_num=osu1124287807.
Full textYu, S.-W. A. "Synthetic, structural and dynamic studies of iron carbonyls and their derivatives." Thesis, University of Essex, 1986. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.371925.
Full textSilva, Nuno João de Oliveira. "Structural and magnetic studies on iron oxide nanoparticles in hybrid matrices." Doctoral thesis, Universidade de Aveiro, 2006. http://hdl.handle.net/10773/8944.
Full textEste trabalho aborda algumas propriedades magnéticas e estruturais de nanopartículas de óxidos e óxidos-hidróxidos de ferro crescidos em matrizes híbridas orgânicas-inorgânicas. As matrizes híbridas, denominadas di-ureasils e obtidas pelo processo sol-gel, são compostas por uma rede siliciosa ligada covalentemente por pontes ureia a cadeias orgânicas de diferente peso molecular. A estrutura local dos di-ureasils não dopados está modelada como grupos de domínios siliciosos com dimensões nanométricas, estruturalmente correlacionados no seio de uma matriz rica em polímero. Neste trabalho mostra-se que os di-ureasils permitem o crescimento controlado de óxidos e óxidos-hidróxidos de ferro, incluindo a magnetite, maguemite, oxihidroxinitrato de ferro e ferrihidrite. O crescimento das nanopartículas de ferrihidrite dá-se em condições ácidas à superfície dos domínios siliciosos, junto aos grupos carbonilo, que funcionam como pontos de nucleação. Desse modo dá-se uma nucleação heterogénea, onde o tamanho das nanopartículas depende da concentração de ferro (entre 1 e 6% em massa), sendo a concentração de partículas constante. As propriedades magnéticas das nanopartículas de ferrihidrite revelam a existência de interacções antiferromagnéticas e de momentos descompensados. A contribuição destas duas componentes nas curvas de magnetização em função do campo magnético pode ser separada usando um método aqui proposto, o que permite um adequado estudo da evolução do momento magnético com a temperatura. O estudo das propriedades magnéticas dinâmicas das partículas de ferrihidrite, através de susceptibilidade ac, medidas de relaxação e medidas de efeito Mossbauer, permitiu estudar a evolução das interacções dipolares em função da concentração de ferro, bem como determinar a distribuição de barreiras de energia de anisotropia no caso em que essas interacções são desprezáveis. É apresentado um novo método para comparação desta distribuição com a distribuição de tamanhos, que permitiu concluir que os momentos magnéticos descompensados estão aleatoriamente distribuídos em volume. Usando baixas concentrações de água, foi possível crescer fases de oxihidroxinitrato de ferro com diferentes graus de cristalinidade, sendo algumas precursoras da ferrihidrite (como observado noutros trabalhos) e sendo outras novas fases. O crescimento de nanopartículas de maguemite e magnetite acontece após incorporação de iões de Fe2+ e Fe3+ seguidos de tratamento básico e térmico. Estes sistemas apresentam propriedades magnéticas típicas de nanopartículas superparamagnéticas sem interacções dipolares. As propriedades magnéticas dependem criticamente da existência de grupos isocianato livres, que actuarão como pontos de nucleação.
The present work focus on the structure and the magnetic properties of iron oxide and iron oxide hydroxide nanoparticles grown in organic-inorganic hybrids. The sol-gel derived matrix, termed di-ureasils, is a siliceous network to which oligopolyoxyethilene chains with different molecular weight are grafted by means of urea cross-links. The di-ureasils local structure was modelled as groups of nanometric siloxane correlated domains embedded in a polymericrich media. In this thesis, the controlled growth of ferrihydrite, iron(III) oxyhydroxynitrate phases, maghemite and magnetite in di-ureasils is demonstrated. Ferrihydrite nanoparticles are formed at low pH on the siliceous surface, where the carbonyl groups act as nucleation points. This implies an heterogeneous nucleation, where the nanoparticles size depend on the amount of iron (in the 1 to 6% wt range) and the nanoparticles concentration is constant. The ferrihydrite nanoparticles have antiferromagnetic and uncompensated/canted moments, responsible for linear and saturation components in the dependence of the magnetization with field, respectively. These components can be separated by a new method here presented and an accurate dependence of the magnetic moment with temperature determined. The dynamic magnetic properties of ferrihydrite were studied by ac susceptibility, relaxation and Mossbauer measurements. These studies allowed the determination of the evolution of the dipolar interactions with the iron content and the determination of the anisotropy energy barrier distribution in cases where such interactions are negligible. Comparing the energy barrier distribution with the size distribution allowed to conclude that the uncompensated moments are randomly distributed in volume. This conclusion is based on a new method here presented, that uses distributions to investigate the power law relation between physical quantities. Antiferromagnetic iron(III) oxyhydroxynitrate phases with different degrees of crystallinity are formed when using low water concentrations in the sol-gel process. Some of these are precursors of ferrihydrite, as previously found in literature, but others constitute new phases. Maghemite and magnetite nanoparticles can be grown inside diureasils after the incorporation of Fe2+ and Fe3+ ions, followed by basic and thermal treatment. The magnetic properties show the existence of noninteracting superparamagnetic nanoparticles. Evidence for the possibility of tuning the magnetic properties of the system by allowing the existence of free isocyanate groups acting as nucleation sites was found.
Mako, Teresa Louise. "Electronic, Structural, and Catalytic Analyses of Iron Pincer Complexes and Methods for the Direct Functionalization of Lactide." Thesis, Boston College, 2017. http://hdl.handle.net/2345/bc-ir:107588.
Full textChapter 1: A review of recent iron catalyzed cross coupling advances. Abstract: Herein, advances in iron catalyzed cross coupling from 2010-2015 are thoroughly reviewed. Newly developed protocols and the mechanistic work that has been conducted to gain understanding of these systems are discussed. Specific emphasis is placed on the techniques used for mechanistic investigations. Chapter 2: Cross coupling applications of pyridyl(diimine) iron complexes. Abstract: Versatile and redox noninnocent pyridyl(diimine) iron complexes were explored for catalytic ability in iron catalyzed cross coupling reactions. These complexes were found active for the coupling of benzyl halides and aryl Grignard reagents, producing moderate yields. Although active for the coupling of cyclohexyl chloride and aryl Grignard reagents, the catalytic ability of these complexes was not general for alkyl halides, and the majority of substrates readily underwent β- hydride elimination. Mechanistic studies indicated the role of PDIFe(I)Ph and PDIFe(0)(N2)2 as offcycle species. Additionally, these complexes were employed for the Suzuki-type coupling of alkyl halides with 1,1-bis(boronates), leading to the conclusion that the processes were instead base catalyzed. Chapter 3: Electronic structure analysis and catalytic applications of carbeno(diamidine) iron complexes. Abstract: Iron(II) pincer complexes carbeno(diamidine) iron dibromide [(CDA)FeBr2] and bis(N-heterocyclic carbene)pyridine iron dibromide [(CNC)FeBr2] were examined by magnetic circular dichroism and density functional theory studies to invesitgate the effect that NHC moieties have on electronic structure and bonding in tridentate pincer ligands. The increased Fe-C bonding and pincer-donating abilities that result from NHC incorporation have a direct impact on spin state and observed ligand fields. Additionally, the position of the NHC moiety on the tridentate ligand and the overall geometry of the molecule were found to effect the net donor ability of the pincers and the strength of the iron-pincer interactions. Three new variations of the CDA ligand were developed and evaluated for catalytic ability in olefin hydrogenation and atom transfer radical polymerization reactions. While iron CDA complexes were found to be mediocre catalysts for both transformations, a cobalt CDA dimer complex was developed that showed promising catalytic activity for olefin hydrogenation. Chapter 4: The direct functionalization of lactide. Abstract: In an effort to provide cyclic diesters that could generate useful and biodegradable polymers, the direct functionalization of lactide was pursued. Lactide undergoes ring opening under a wide range of conditions, and thus traditional methods used for the functionalization of lactones could not be employed here. Typical routes for the formation of cyclic diesters involve multi-step syntheses and low yielding cyclization reactions. Herein, C-H activation and soft enolization have been identified as promising avenues toward the direct functionalization of lactide. Palladium catalyzed C-H activation was not amenable for lactide, however, soft enolization techniques led to low yields of the desired functionalized product
Thesis (MS) — Boston College, 2017
Submitted to: Boston College. Graduate School of Arts and Sciences
Discipline: Chemistry
Yoon, Taejin. "Functional and structural studies of human frataxin an iron chaperone protein for mitochondrial iron-sulfur cluster and heme biosyntheses /." Connect to resource, 2005. http://rave.ohiolink.edu/etdc/view?acc%5Fnum=osu1124287807.
Full textHarry, Milton Anthony. "Structural and electrical properties of ion beam synthesised ternary iron-cobalt silicide." Thesis, University of Surrey, 1996. http://epubs.surrey.ac.uk/842748/.
Full textWhite, Paul. "Bacterial protein import mediated by an iron transporter." Thesis, University of Oxford, 2017. https://ora.ox.ac.uk/objects/uuid:20298bb4-0998-4dad-9dfa-dd9e52854dec.
Full textKuranchie, Francis Atta. "Characterisation and applications of iron ore tailings in building and construction projects." Thesis, Edith Cowan University, Research Online, Perth, Western Australia, 2015. https://ro.ecu.edu.au/theses/1623.
Full textWomack, Tanya G. "Structural and synthetic studies on iron(III) complexes formed with biologically relevant ligands." Thesis, University of East Anglia, 1999. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.302143.
Full textLund, Loren Glen. "Mobilization of Iron Enhances the Iron-Dependent Biochemical Reactivity of Asbestos in Vitro and Contributes to the Cytotoxicity of Asbestos in Cultured Cells." DigitalCommons@USU, 1992. https://digitalcommons.usu.edu/etd/7174.
Full textLandgraf, Boris [Verfasser], and Wolfgang [Akademischer Betreuer] Hansen. "Structural, magnetic and electrical investigation of Iron-based III/V-semiconductor hybrid structures / Boris Landgraf. Betreuer: Wolfgang Hansen." Hamburg : Staats- und Universitätsbibliothek Hamburg, 2014. http://d-nb.info/1048626555/34.
Full textEkiert, Thomas F. Jr. "Structural and magnetic characterization of nanostructured iron composites formed in the presence of citrate." Access to citation, abstract and download form provided by ProQuest Information and Learning Company; downloadable PDF file, 202 p, 2009. http://proquest.umi.com/pqdweb?did=1818417551&sid=4&Fmt=2&clientId=8331&RQT=309&VName=PQD.
Full textAdjimani, Jonathan P. "Mechanism of Iron Transport in Mycelia Sterilia EP-76." DigitalCommons@USU, 1987. https://digitalcommons.usu.edu/etd/7165.
Full textWong, Lewis. "Optical & structural properties of ion beam fabricated amorphous and polycrystalline iron disilicide." Thesis, University of Surrey, 2010. http://epubs.surrey.ac.uk/771882/.
Full textMacpherson, K. A. "Static and dynamic aspects of structural chemistry : polynuclear complexes of the iron triad." Thesis, University of Bristol, 1985. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.356222.
Full textLongbotham, Edward. "Structural and mechanistic studies of the iron(II)- and 2-oxoglutarate-dependent dioxygenases." Thesis, University of Manchester, 2014. https://www.research.manchester.ac.uk/portal/en/theses/structural-and-mechanistic-studies-of-the-ironii-and-2oxoglutarate-dependent-dioxygenases(e07c1b53-a6bb-4c9f-8ef2-6c6e0c3d800d).html.
Full textAbenojar, Eric Chua. "Investigation of Structural Effects on the AC Magnetic Properties of Iron Oxide Nanoparticles." Case Western Reserve University School of Graduate Studies / OhioLINK, 2018. http://rave.ohiolink.edu/etdc/view?acc_num=case1516187103909374.
Full textMilford, Gabrielle Helen. "Moessbauer spectroscopic studies of the magnetic and structural properties of novel nanophase magnetic materials." Thesis, University of Liverpool, 2000. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.343589.
Full textMasala, P. G. "IRON OXIDE NANOPARTICLES AND NANOCOMPOSITES: A DIFFRACTOMETRIC STUDY." Doctoral thesis, Università degli Studi di Milano, 2014. http://hdl.handle.net/2434/244853.
Full textAbdel-Rahman, Nabil Mahmoud. "Cold-formed steel compression members with perforations." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 1997. http://www.collectionscanada.ca/obj/s4/f2/dsk2/ftp02/NQ30065.pdf.
Full textVernik, Isak. "Structural and kinetic studies of [mu]-oxo iron complexes of bis((dioximato)borate) macrocycles." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 1997. http://www.collectionscanada.ca/obj/s4/f2/dsk2/ftp03/MQ27385.pdf.
Full textCroy, Jason Robert. "Supported mono and bimetallic platinum and iron nanoparticles electronic, structural, catalytic, and vibrational properties." Doctoral diss., University of Central Florida, 2010. http://digital.library.ucf.edu/cdm/ref/collection/ETD/id/4652.
Full textID: 028916773; System requirements: World Wide Web browser and PDF reader.; Mode of access: World Wide Web.; Thesis (Ph.D.)--University of Central Florida, 2010.; Includes bibliographical references (p. 204-229).
Ph.D.
Doctorate
Department of Physics
Sciences
Smith, Stephen Findley. "Structural stability, support and excavation aspects of mine openings in stratified iron ore deposits." Thesis, University of Nottingham, 1990. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.283587.
Full textFern, George Robert. "Structural studies on iron sulfur clusters and ferrocenyl compounds, the importance of lattice effects." Thesis, University of Essex, 1998. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.363442.
Full textMizutani, Kimihiko. "Studies on the Structural Mechanism of Iron Uptake and Release in Ovotransferrin N-Lobe." Kyoto University, 2001. http://hdl.handle.net/2433/78126.
Full textLi, Song. "Structural design, characterization, and property investigation of iron oxide : nanoparticles with visible light photoactivity." Thesis, Metz, 2009. http://www.theses.fr/2009METZ038S/document.
Full textGlobal environmental pollution and energy issue are considered as two greatest challenges that human society is facing now. Semiconductor photocatalysis is expected as a highly promising strategy for both harvesting solar energy and decomposing unwanted organics in water and air by solar light irradiation. The main problem of TiO2, the most widely studied photocatalyst material by now, is that its band gap is as wide as 3.1 eV, making it absorb only the UV part of the incident solar irradiation. Iron oxide has a proper band gap of about 2.1 eV which lies in the visible region of solar spectrum and allows utilization of 45% of the solar radiation. Together with the environmental compatibility and low cost, iron oxide is considered as a good candidate for visible light photocatalyst. For the purpose of exploiting iron oxide as effective photocatalyst, we have prepared iron oxide nanoparticles of various shapes and investigated their photocatalytic activities. The objective of the present dissertation is to develop and characterize iron oxide photocatalyst which is highly responsive to visible light. Nanostructured iron oxide and oxyhydroxide nanoparticles with various morphologies were designed and synthesized via hydrothermal route. Stabilizer molecules with different capping groups were applied in the reaction system to control the morphology of the final products. The effects attributed to the interaction between capping groups of stabilizer molecules and iron oxide surfaces. To elucidate the growth mechanism of iron oxide particles, a TEM based trace method was proposed to characterize the crystalline planes and directions of a faceted nanoparticle, and therefore its shape. The Miller indices of surface planes can be determined through coordinate transformation after the determination of the edge vectors in the TEM screen coordinate system. Methyl orange, a representative azo dye pollutant in textile industry, was chosen as the model contaminant molecule to evaluate the photocatalytic performance of the obtained powders. A systematic study, including the influence of the reaction conditions, the kinetics and the route of the oxidation of the methyl orange molecules, was carried out to explore the mechanism of photocatalytic degradation of organic molecules over iron oxide under visible light irradiation. It was found that the photodegradation of methyl orange over iron oxide was more like a semiconductor photocatalysis process, rather than a surface reaction process of ligands to metal charge transfer. Moreover, the visible light photocatalytic activities of iron oxide can be tuned by controlling the morphologies, especially the crystallographic facet of the iron oxide nanoparticles. II Post-treatment techniques were adopted to enhance the ability of iron oxide photocatalyst to decompose organic pollutant molecules. The iron oxide nanopowders were modified by loading noble metals, such as Ag and Au nanoparticles. Photocatalytic experimental results showed that the abilities of loaded metal particles to inhibit the electron-hole pair recombination depend on the relative positions between their work functions and conductive band position of the iron oxide. To overcome the problem caused by the short free distance of charge carriers inside iron oxide, nanorod arrays of iron oxide were prepared. The results show that the photocatalytic activity of iron oxides can be improved by microstructure optimization and surface modification
Aho, Mark Francis. "A database for encased and concrete-filled columns." Thesis, Georgia Institute of Technology, 1996. http://hdl.handle.net/1853/19061.
Full textAl-Shihri, Marai Abdullah 1958. "BUCKLING STRENGTH OF HEAVY STEEL COLUMNS (WELDED SHAPES, INITIAL CURVED COLUMNS, HOT-ROLLED SHAPES)." Thesis, The University of Arizona, 1986. http://hdl.handle.net/10150/291869.
Full textBiddah, Aiman Mahmoud Samy. "Evaluation of the seismic level of protection of steel moment resisting frame building structures." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 1998. http://www.collectionscanada.ca/obj/s4/f2/dsk1/tape11/PQDD_0007/NQ42833.pdf.
Full textMacedo, Joana Tavares. "Functional and structural studies of a mini-ferritin protein." Master's thesis, Faculdade de Ciências e Tecnologia, 2014. http://hdl.handle.net/10362/13301.
Full textDNA-binding protein from starved cells (Dps) are mini-ferritins mainly expressed in bacteria during severe environmental stress. These proteins with a highly conserved structure provide wide protection to cells and function as iron-storage proteins. Some Dps can also bind DNA and the N-terminus has been suggested to be involved in this interaction, due to its positively charged residues. This thesis focused on the functional and structural features of recombinant Dps protein from Pseudomonas nautica 617 (P. nautica). To investigate the iron incorporation mechanism, iron uptake assays using H2O2 and O2 as co-substrate for iron oxidation were performed with Dps WT and F46G variant, using UVVisible spectroscopy. The results showed that Phe46, located close to the ferroxidase center (FOC), does not influence the amount of iron stored. Nevertheless, this residue affectes the iron core formation when O2 was used as co-substrate. Structural characterization of the incorporation of Fe(II) and Cu(II) was performed with X-ray crystallography. High resolution crystal structures of Apo-Dps, Dps incubated with 12 Fe(II)/Dps (12Fe-Dps) and Dps incubated with 12 Cu(II)/Dps (12Cu-Dps) were obtained. It was possible to observe the binding of the metals to the FOCs with different coordination geometry as well as geometrically different FOCs. Additionally Fe(II) and Cu(II) atoms were assigned in a position where hydrophilic pores can be created and serve as entry routes for the metals. For the characterization of the Dps-DNA interaction, electrophoretic mobility shift assays (EMSAs) were carried out with Dps WT and Q14E variant. The results showed that this protein can bind DNA, but the affinity for DNA significantly decreases in the presence of the negative charge in the N-terminus. In this sense, mutations in the N-terminus that may increase the affinity for DNA binding were produced by site-directed mutagenesis.
Vey, Jessica L. (Jessica Lynn). "Structural insight into the assembly of iron-sulfur clusters and their function in radical generation." Thesis, Massachusetts Institute of Technology, 2008. http://hdl.handle.net/1721.1/43090.
Full textVita.
Includes bibliographical references.
This thesis addresses two emerging areas in the study of iron-sulfur cluster biochemistry: bioassembly of iron-sulfur clusters, and their involvement in initiation of radical chemistry. The structure of a cysteine desulfurase involved in cluster bioassembly in the cyanobacterium Synechocystis PCC sp. 6803 was solved by X-ray crystallography and analyzed in terms of its mechanistic implications. We found that the active site cysteine responsible for the direct removal of sulfur from substrate cysteine is located on a short, well-ordered loop, consistent with structures solved of homologous proteins. The length of this loop is thought to restrain the active site cysteine, interfering with its ability to affect catalysis. Our results are consistent with the theory that this cysteine desulfurase requires an accessory protein for fully activity in vivo. Two structures of pyruvate formate-lyase activating enzyme from Escherichia coli, an Sadenosylmethionine radical enzyme, were also solved by X-ray crystallography, providing the first structure of an activase from this family of enzymes. These structures revealed the enzyme's active site and the residues involved in binding and orienting substrate for hydrogen atom abstraction. Comparison of the structures of the substrate-free and substrate-bound forms of the enzyme identified a conformational change associated with substrate binding. Detailed analyses of the structure of pyruvate formatelyase activating enzyme were carried out to provide insight into catalysis. These structures were also analyzed in comparison with other S-adenosylmethionine radical enzyme structures to more clearly understand the structural basis for reactivity in this superfamily.
by Jessica L. Vey.
Ph.D.
Young, Steven E. "Crystal chemical control on intra-structural copper isotope fractionation in natural copper-iron-sulfur minerals." Diss., The University of Arizona, 2003. http://hdl.handle.net/10150/289914.
Full textHewetson, C. G. "Object - oriented steel member design framework /." Thesis, Link to the online version, 2005. http://hdl.handle.net/10019/249.
Full text