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Journal articles on the topic 'Isotopic Labeling of Biotherapeutics'

Author: Grafiati

Published: 7 June 2025

Last updated: 2 August 2025

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1

Fan, Yao-Yun, Vahid Farrokhi, Teresa Caiazzo, Mengmeng Wang, Denise M. O’Hara, and Hendrik Neubert. "Human FcRn Tissue Expression Profile and Half-Life in PBMCs." Biomolecules 9, no. 8 (2019): 373. http://dx.doi.org/10.3390/biom9080373.

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System-wide quantitative characterization of human neonatal Fc receptor (FcRn) properties is critical for understanding and predicting human PK (pharmacokinetics) as well as the distribution of mAbs and Fc-fusion proteins using PBPK (physiologically-based pharmacokinetic) modeling. To this end, tissue-specific FcRn expression and half-life are important model inputs. Herein, human FcRn tissue expression was measured by peptide immunoaffinity chromatography coupled with high-resolution mass spectrometry. FcRn concentrations across 14 human tissues ranged from low to 230 pmol per gram of tissue.

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2

Gevaert, Kris, Francis Impens, Bart Ghesquière, Petra Van Damme, Anja Lambrechts, and Joël Vandekerckhove. "Stable isotopic labeling in proteomics." PROTEOMICS 8, no. 23-24 (2008): 4873–85. http://dx.doi.org/10.1002/pmic.200800421.

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3

Romsdahl, Trevor B., Shrikaar Kambhampati, Somnath Koley, et al. "Analyzing Mass Spectrometry Imaging Data of 13C-Labeled Phospholipids in Camelina sativa and Thlaspi arvense (Pennycress) Embryos." Metabolites 11, no. 3 (2021): 148. http://dx.doi.org/10.3390/metabo11030148.

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The combination of 13C-isotopic labeling and mass spectrometry imaging (MSI) offers an approach to analyze metabolic flux in situ. However, combining isotopic labeling and MSI presents technical challenges ranging from sample preparation, label incorporation, data collection, and analysis. Isotopic labeling and MSI individually create large, complex data sets, and this is compounded when both methods are combined. Therefore, analyzing isotopically labeled MSI data requires streamlined procedures to support biologically meaningful interpretations. Using currently available software and techniqu

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4

Reis, Mariza Gomes, Rodrigo Bibiloni, Paul McJarrow, et al. "Isotopic labeling of milk disialogangliosides (GD3)." Chemistry and Physics of Lipids 200 (October 2016): 104–12. http://dx.doi.org/10.1016/j.chemphyslip.2016.08.003.

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5

Paine, John B., Yezdi B. Pithawalla, John D. Naworal, and Charles E. Thomas. "Carbohydrate pyrolysis mechanisms from isotopic labeling." Journal of Analytical and Applied Pyrolysis 80, no. 2 (2007): 297–311. http://dx.doi.org/10.1016/j.jaap.2007.03.007.

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6

Paine, John B., Yezdi B. Pithawalla, and John D. Naworal. "Carbohydrate pyrolysis mechanisms from isotopic labeling." Journal of Analytical and Applied Pyrolysis 82, no. 1 (2008): 42–69. http://dx.doi.org/10.1016/j.jaap.2007.12.005.

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7

Paine, John B., Yezdi B. Pithawalla, and John D. Naworal. "Carbohydrate pyrolysis mechanisms from isotopic labeling." Journal of Analytical and Applied Pyrolysis 82, no. 1 (2008): 10–41. http://dx.doi.org/10.1016/j.jaap.2008.01.002.

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8

Paine, John B., Yezdi B. Pithawalla, and John D. Naworal. "Carbohydrate pyrolysis mechanisms from isotopic labeling." Journal of Analytical and Applied Pyrolysis 83, no. 1 (2008): 37–63. http://dx.doi.org/10.1016/j.jaap.2008.05.008.

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9

Charron, Craig S., Steven J. Britz, Roman M. Mirecki, Dawn J. Harrison, Beverly A. Clevidence, and Janet A. Novotny. "Isotopic Labeling of Red Cabbage Anthocyanins with Atmospheric 13CO2." Journal of the American Society for Horticultural Science 133, no. 3 (2008): 351–59. http://dx.doi.org/10.21273/jashs.133.3.351.

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Isotopic labeling of plants provides a unique opportunity for understanding metabolic processes. A significant challenge of isotopic labeling during plant growth is that isotopes must be administered without disrupting plant development and at sufficient levels for mass spectral analysis. We describe a system for isotopic labeling of leafy vegetables with 13C and demonstrate successful incorporation of 13C into anthocyanins of preheading red cabbage (Brassica oleracea L. var. capitata L.). ‘Super Red’ red cabbage seedlings were grown for 34 days in an airtight acrylic labeling chamber supplied

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10

Miller, Benjamin F., Christopher A. Wolff, Fredrick F. Peelor, Patrick D. Shipman, and Karyn L. Hamilton. "Modeling the contribution of individual proteins to mixed skeletal muscle protein synthetic rates over increasing periods of label incorporation." Journal of Applied Physiology 118, no. 6 (2015): 655–61. http://dx.doi.org/10.1152/japplphysiol.00987.2014.

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Advances in stable isotope approaches, primarily the use of deuterium oxide (2H2O), allow for long-term measurements of protein synthesis, as well as the contribution of individual proteins to tissue measured protein synthesis rates. Here, we determined the influence of individual protein synthetic rates, individual protein content, and time of isotopic labeling on the measured synthesis rate of skeletal muscle proteins. To this end, we developed a mathematical model, applied the model to an established data set collected in vivo, and, to experimentally test the impact of different isotopic la

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11

Nkedi-Kizza, P., R. K. Jackson, and J. L. MacIntyre. "Isotopic Triple Labeling in Miscible Displacement Studies." Soil Science Society of America Journal 49, no. 3 (1985): 780–83. http://dx.doi.org/10.2136/sssaj1985.03615995004900030050x.

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12

Xu, Houchao, Nathalie D. Lackus, Tobias G. Köllner, and Jeroen S. Dickschat. "Isotopic Labeling Experiments Solve the Hedycaryol Problem." Organic Letters 24, no. 2 (2022): 587–91. http://dx.doi.org/10.1021/acs.orglett.1c04021.

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13

Halloran, Bernard P., Daniel D. Bikle, Margaret E. Castro, and Elaine Gee. "Isotopic labeling affects 1,25-dihydroxyvitamin D metabolism." Biochemistry 28, no. 3 (1989): 1278–81. http://dx.doi.org/10.1021/bi00429a049.

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14

Dugave, Christophe, and Karen Hinsinger. "ISOTOPICS – ISOTOPIC LABELING FOR DRUG INNOVATION – H2020." Impact 2017, no. 8 (2017): 52–54. http://dx.doi.org/10.21820/23987073.2017.8.52.

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15

Bueschl, C., R. Krska, B. Kluger, and R. Schuhmacher. "Isotopic labeling-assisted metabolomics using LC–MS." Analytical and Bioanalytical Chemistry 405, no. 1 (2012): 27–33. http://dx.doi.org/10.1007/s00216-012-6375-y.

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16

Champney, W. Scott. "Reductive methods for isotopic labeling of antibiotics." Analytical Biochemistry 181, no. 1 (1989): 90–95. http://dx.doi.org/10.1016/0003-2697(89)90398-9.

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17

Roston, Daniel, and Amnon Kohen. "Stereospecific multiple isotopic labeling of benzyl alcohol." Journal of Labelled Compounds and Radiopharmaceuticals 57, no. 2 (2013): 75–77. http://dx.doi.org/10.1002/jlcr.3143.

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18

Couvreur, Valentin, Youri Rothfuss, Félicien Meunier, et al. "Disentangling temporal and population variability in plant root water uptake from stable isotopic analysis: when rooting depth matters in labeling studies." Hydrology and Earth System Sciences 24, no. 6 (2020): 3057–75. http://dx.doi.org/10.5194/hess-24-3057-2020.

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Abstract. Isotopic labeling techniques have the potential to minimize the uncertainty of plant root water uptake (RWU) profiles estimated using multisource (statistical) modeling by artificially enhancing the soil water isotopic gradient. On the other end of the modeling continuum, physical models can account for hydrodynamic constraints to RWU if simultaneous soil and plant water status data are available. In this study, a population of tall fescue (Festuca arundinacea cv. Soni) was grown in amacro-rhizotron and monitored for a 34 h long period following the oxygen stable isotopic (18O) label

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19

Sun, Zhenyu, Guanghui Ji, Guoli Wang, Lei Wei, Ying Zhang, and Haojie Lu. "One step carboxyl group isotopic labeling for quantitative analysis of intact N-glycopeptides by mass spectrometry." Chemical Communications 57, no. 34 (2021): 4154–57. http://dx.doi.org/10.1039/d1cc00197c.

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20

Knoche, Stefan, Maurice Heid, Niklas Gora, et al. "Investigation of the acrolein oxidation on heteropolyacid catalysts by transient response methods." Catalysis Science & Technology 10, no. 15 (2020): 5231–44. http://dx.doi.org/10.1039/d0cy00851f.

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21

Iglesias, Jacobo, Lekha Sleno, and Dietrich A. Volmer. "Isotopic Labeling of Metabolites in Drug Discovery Applications." Current Drug Metabolism 13, no. 9 (2012): 1213–25. http://dx.doi.org/10.2174/138920012803341357.

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22

Murphy, Michael, Jacob Sitterly, Steven Grzeskowiak, Greg Denbeaux, and Robert L. Brainard. "Isotopic Labeling Studies of EUV Photoresists Containing Antimony." Journal of Photopolymer Science and Technology 31, no. 2 (2018): 233–42. http://dx.doi.org/10.2494/photopolymer.31.233.

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23

ECKERT, H., and D. FIAT. "Isotopic labeling of tyrosine, followed by 17O n.m.r." International Journal of Peptide and Protein Research 27, no. 6 (2009): 613–16. http://dx.doi.org/10.1111/j.1399-3011.1986.tb01057.x.

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24

Wang, Yue, Kaijie Xiao, and Zhixin Tian. "Quantitative N-glycoproteomics using stable isotopic diethyl labeling." Talanta 219 (November 2020): 121359. http://dx.doi.org/10.1016/j.talanta.2020.121359.

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25

Pacchioni, Mirko, Andrea Bega, Antonio C. Fabretti, Donella Rovai, and Andrea Cornia. "Post-synthetic isotopic labeling of an azamacrocyclic ligand." Tetrahedron Letters 43, no. 5 (2002): 771–74. http://dx.doi.org/10.1016/s0040-4039(01)02266-3.

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26

Dimitrov, Anton, Konrad Seppelt, Dieter Scheffler, and Helge Willner. "Chemical Synthesis of Ozone, Isotopic Labeling, and Redistribution." Journal of the American Chemical Society 120, no. 34 (1998): 8711–14. http://dx.doi.org/10.1021/ja980887n.

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27

Suzuki, Hiroaki, Yuichiro Shimada, Masayuki Kobayashi, Masato Kudo, Tsunenori Nozawa, and Zheng-Yu Wang. "Isotopic labeling of proteins by utilizing photosynthetic bacteria." Analytical Biochemistry 347, no. 2 (2005): 324–26. http://dx.doi.org/10.1016/j.ab.2005.05.012.

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28

Mitsuhiko, Ikura, Dominique Marion, Lewis E. Kay, et al. "Heteronuclear 3D NMR and isotopic labeling of calmodulin." Biochemical Pharmacology 40, no. 1 (1990): 153–60. http://dx.doi.org/10.1016/0006-2952(90)90190-v.

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29

Koder, Ronald L., and Anne-Frances Miller. "Overexpression, Isotopic Labeling, and Spectral Characterization ofEnterobacter cloacaeNitroreductase." Protein Expression and Purification 13, no. 1 (1998): 53–60. http://dx.doi.org/10.1006/prep.1997.0866.

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30

Chen, Chia-Hsin, Emeline Gaillard, Frédéric Mentink-Vigier, et al. "Direct 17O Isotopic Labeling of Oxides Using Mechanochemistry." Inorganic Chemistry 59, no. 18 (2020): 13050–66. http://dx.doi.org/10.1021/acs.inorgchem.0c00208.

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31

Virtanen, Salla I., Anne M. Kiirikki, Kornelia M. Mikula, Hideo Iwaï, and O. H. Samuli Ollila. "Heterogeneous dynamics in partially disordered proteins." Physical Chemistry Chemical Physics 22, no. 37 (2020): 21185–96. http://dx.doi.org/10.1039/d0cp03473h.

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32

Hirscher, Nathanael A., Jay A. Labinger, and Theodor Agapie. "Isotopic labelling in ethylene oligomerization: addressing the issue of 1-octene vs. 1-hexene selectivity." Dalton Transactions 48, no. 1 (2019): 40–44. http://dx.doi.org/10.1039/c8dt04509g.

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33

Chalyavi, Farzaneh, Andrew J. Schmitz, Natalie R. Fetto, Matthew J. Tucker, Scott H. Brewer, and Edward E. Fenlon. "Extending the vibrational lifetime of azides with heavy atoms." Physical Chemistry Chemical Physics 22, no. 32 (2020): 18007–13. http://dx.doi.org/10.1039/d0cp02814b.

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34

Parham, Joshua D., Gayan B. Wijeratne, Jaycee R. Mayfield, and Timothy A. Jackson. "Steric control of dioxygen activation pathways for MnII complexes supported by pentadentate, amide-containing ligands." Dalton Transactions 48, no. 34 (2019): 13034–45. http://dx.doi.org/10.1039/c9dt02682g.

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35

Millard, Pierre, Baudoin Delépine, Matthieu Guionnet, Maud Heuillet, Floriant Bellvert, and Fabien Létisse. "IsoCor: isotope correction for high-resolution MS labeling experiments." Bioinformatics 35, no. 21 (2019): 4484–87. http://dx.doi.org/10.1093/bioinformatics/btz209.

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Abstract Summary Mass spectrometry (MS) is widely used for isotopic studies of metabolism and other (bio)chemical processes. Quantitative applications in systems and synthetic biology require to correct the raw MS data for the contribution of naturally occurring isotopes. Several tools are available to correct low-resolution MS data, and recent developments made substantial improvements by introducing resolution-dependent correction methods, hence opening the way to the correction of high-resolution MS (HRMS) data. Nevertheless, current HRMS correction methods partly fail to determine which is

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36

Schaub, Jochen, Klaus Mauch, and Matthias Reuss. "Metabolic flux analysis inEscherichia coli by integrating isotopic dynamic and isotopic stationary13C labeling data." Biotechnology and Bioengineering 99, no. 5 (2008): 1170–85. http://dx.doi.org/10.1002/bit.21675.

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37

Gu, Liqing, and Renã A. S. Robinson. "High-throughput endogenous measurement of S-nitrosylation in Alzheimer's disease using oxidized cysteine-selective cPILOT." Analyst 141, no. 12 (2016): 3904–15. http://dx.doi.org/10.1039/c6an00417b.

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38

Paris, Aubrey R., and Andrew B. Bocarsly. "Mechanistic insights into C2 and C3 product generation using Ni3Al and Ni3Ga electrocatalysts for CO2 reduction." Faraday Discussions 215 (2019): 192–204. http://dx.doi.org/10.1039/c8fd00177d.

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39

Kajihata, Shuichi, Chikara Furusawa, Fumio Matsuda, and Hiroshi Shimizu. "OpenMebius: An Open Source Software for Isotopically Nonstationary13C-Based Metabolic Flux Analysis." BioMed Research International 2014 (2014): 1–10. http://dx.doi.org/10.1155/2014/627014.

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Thein vivomeasurement of metabolic flux by13C-based metabolic flux analysis (13C-MFA) provides valuable information regarding cell physiology. Bioinformatics tools have been developed to estimate metabolic flux distributions from the results of tracer isotopic labeling experiments using a13C-labeled carbon source. Metabolic flux is determined by nonlinear fitting of a metabolic model to the isotopic labeling enrichment of intracellular metabolites measured by mass spectrometry. Whereas13C-MFA is conventionally performed under isotopically constant conditions, isotopically nonstationary13C meta

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40

Cao, Weiqian, Wei Zhang, Jiangming Huang, Biyun Jiang, Lijuan Zhang, and Pengyuan Yang. "Glycan reducing end dual isotopic labeling (GREDIL) for mass spectrometry-based quantitative N-glycomics." Chemical Communications 51, no. 71 (2015): 13603–6. http://dx.doi.org/10.1039/c5cc05365j.

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41

Andersen, Jakob L., Daniel Merkle, and Peter S. Rasmussen. "Combining Graph Transformations and Semigroups for Isotopic Labeling Design." Journal of Computational Biology 27, no. 2 (2020): 269–87. http://dx.doi.org/10.1089/cmb.2019.0291.

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42

Muggli, Darrin S., Sheldon A. Larson, and John L. Falconer. "Photocatalytic Oxidation of Ethanol: Isotopic Labeling and Transient Reaction." Journal of Physical Chemistry 100, no. 39 (1996): 15886–89. http://dx.doi.org/10.1021/jp960587x.

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43

Ranasinghe, Chethya, Philip Pagano, Paul J. Sapienza, Andrew L. Lee, Amnon Kohen, and Christopher M. Cheatum. "Isotopic Labeling of Formate Dehydrogenase Perturbs the Protein Dynamics." Journal of Physical Chemistry B 123, no. 49 (2019): 10403–9. http://dx.doi.org/10.1021/acs.jpcb.9b08426.

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44

Becker, G. W. "Stable isotopic labeling of proteins for quantitative proteomic applications." Briefings in Functional Genomics and Proteomics 7, no. 5 (2008): 371–82. http://dx.doi.org/10.1093/bfgp/eln047.

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45

Ellman, Jonathan A., Brian F. Volkman, David Mendel, Peter G. Schulz, and David E. Wemmer. "Site-specific isotopic labeling of proteins for NMR studies." Journal of the American Chemical Society 114, no. 20 (1992): 7959–61. http://dx.doi.org/10.1021/ja00046a080.

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46

Fate, Gwendolyn D., Charles P. Benner, Stephen H. Grode, and Terry J. Gilbertson. "The Biosynthesis of Sulfomycin Elucidated by Isotopic Labeling Studies." Journal of the American Chemical Society 118, no. 46 (1996): 11363–68. http://dx.doi.org/10.1021/ja961864g.

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47

Nieto, Natalia, Ian J. Munslow, Jonathan Barr, J. Benet-Buchholz, and Anton Vidal-Ferran. "Dioxirane mediated asymmetric epoxidations: stereochemical studies via isotopic labeling." Organic & Biomolecular Chemistry 6, no. 13 (2008): 2276. http://dx.doi.org/10.1039/b801922c.

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48

Oda, Y. "In Vivo Isotopic Labeling of Proteins for Quantitative Proteomics." Cold Spring Harbor Protocols 2007, no. 10 (2007): pdb.prot4743. http://dx.doi.org/10.1101/pdb.prot4743.

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49

Bour, Petr, Jan Kubelka, and Timothy A. Keiderling. "Simulations of oligopeptide vibrational CD: Effects of isotopic labeling." Biopolymers 53, no. 5 (2000): 380–95. http://dx.doi.org/10.1002/(sici)1097-0282(20000415)53:5<380::aid-bip3>3.0.co;2-r.

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50

Kim, Kyoung-Jin, Yoon-Woo Kim, Yun-Gon Kim, et al. "Stable isotopic labeling-based quantitative targeted glycomics (i-QTaG)." Biotechnology Progress 31, no. 3 (2015): 840–48. http://dx.doi.org/10.1002/btpr.2078.

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