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Dissertations / Theses on the topic 'ITS2 sequence'

Author: Grafiati

Published: 5 June 2025

Last updated: 2 August 2025

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1

Koetschan, Christian [Verfasser], and Jörg [Akademischer Betreuer] Schultz. "The Eukaryotic ITS2 Database - A workbench for modelling RNA sequence-structure evolution / Christian Koetschan. Betreuer: Jörg Schultz." Würzburg : Universitätsbibliothek der Universität Würzburg, 2012. http://d-nb.info/1026653401/34.

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2

Konikkat, Salini. "Dynamic Remodeling Events Drive the Removal of the ITS2 Spacer Sequence During Assembly of 60S Ribosomal Subunits in S. cerevisiae." Research Showcase @ CMU, 2016. http://repository.cmu.edu/dissertations/608.

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Ribosome assembly in eukaryotes require ~200 trans-acting proteins that drive the concerted processes of pre-rRNA processing and modification, RNA folding and rprotein binding. Previous work has identified the steps of ribosome assembly in which most trans-acting ‘assembly factors’ and r-proteins function. Yet, we are only beginning to understand the mechanistic details of remodeling events facilitated by assembly factors and r-proteins during ribosome assembly. The objective of my work is to understand mechanistic details underlying the removal of spacer sequences ITS1 and ITS2 in pre-ribosom

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3

Zhao, Xianming, Mingji Yang, Tingxian Zhou, and Liqun Meng. "SPREAD SPECTRUM COMMUNICATION SCHEME USING PHASESHIFTING SEQUENCE AND ITS PROPERTIES." International Foundation for Telemetering, 1998. http://hdl.handle.net/10150/609223.

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International Telemetering Conference Proceedings / October 26-29, 1998 / Town & Country Resort Hotel and Convention Center, San Diego, California<br>This paper analyzes the pseudo-random characteristic of m-sequence and proposes a spread spectrum communication scheme in which the phase-shifting sequences of msequence can be used as the spread spectrum code under given condition. Therefore, the available spread spectrum code set is expanded. It is theoretically proved that there are some advantages in using phase-shifting sequences instead of the conventional msequences or GOLD-sequences in sp

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4

Ярмоленко, Маріанна Володимирівна. "Біоінформатичний аналіз консервативних ділянок геномів промислових видів дріжджів". Магістерська робота, Київський національний університет технологій та дизайну, 2021. https://er.knutd.edu.ua/handle/123456789/19387.

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В дипломній магістерській роботі розглянуті дані молекулярно-генетичних i біоінформатичних методів дослідження геномів дріжджів задля оцінки їх біотехнологічного потенціалу за допомогою генетичної ідентифікації. Описані біоінформатичні методи дослідження геномів дріжджів для вивчення мікроеволюційного процессу шляхом порівняльного аналізу консервативних ділянок геному.<br>In the master's thesis the data of molecular genetic and bioinformatics methods of research of yeast genomes for estimation of their biotechnological potential by means of genetic identification are considered. Bioinformatics

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5

Clevinger, Jennifer Ann. "Systematics of Silphium and its subtribe Engelmanniinae (Asteraceae : Heliantheae) /." Digital version accessible at:, 1999. http://wwwlib.umi.com/cr/utexas/main.

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6

Chen, Yun-Shiow. "The changepoint problem in a multinomial sequence and its application /." The Ohio State University, 1988. http://rave.ohiolink.edu/etdc/view?acc_num=osu148759630735862.

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7

Hsieh, Ya-Ching. "Homals-clustering analysis and its applications in computational sequence analysis." Diss., Restricted to subscribing institutions, 2007. http://proquest.umi.com/pqdweb?did=1472131881&sid=1&Fmt=2&clientId=1564&RQT=309&VName=PQD.

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8

Hurst, Rebecca Eldridge Hurst. "Spiritual Quest as Poetic Sequence: Theodore Roethke's "North American Sequence" and its Relation to T S Eliot's "Four Quartets"." W&M ScholarWorks, 1997. https://scholarworks.wm.edu/etd/1539626121.

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9

Day, A. J. "Structural studies on complement factor H and its homologues." Thesis, University of Oxford, 1988. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.233434.

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10

Vaccari, Thomas. "Synthesis of thioenol ether functionalized cyclooctyne and its orthogonal cycloaddition sequence." Master's thesis, Alma Mater Studiorum - Università di Bologna, 2020. http://amslaurea.unibo.it/21705/.

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In this work, the synthesis of a new bifunctionalized cyclooctyne for a possible layer by layer surface functionalization is presented. The main objective is to find a more stable molecule than the literature known methyl enol ether substituted cyclooctyne. Accordingly, the two target functionalities are an internal alkyne group and a vinyl methyl sulfide group. The synthesis was achieved in 9 steps and consists first of all in the preparation of an aldehyde starting from 1,5-cyclooctadiene with a cyclopropanation reaction followed by a reduction and the SWERN oxidation to an aldehyde. The new

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11

Conway, Brian Harold. "Palynostratigraphy of the Jurassic sequence in Israel and its thermal maturity." Thesis, University of London, 1987. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.242812.

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12

Kahmann-Robinson, Julia A. Atchley Stacy C. "The sequence stratigraphic evolution of the Sturgeon Lake bank, central Alberta, Canada and its regional implications." Waco, Tex. : Baylor University, 2005. http://hdl.handle.net/2104/3016.

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13

Tackett, Severius D. "The reconstruction methodology : with special reference to sequence analysis and its extensions." Thesis, University of Oxford, 1990. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.276875.

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14

SÌŒali, Andrej. "Modelling three-dimensional structure of a protein from its amino acid sequence." Thesis, Birkbeck (University of London), 1991. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.415316.

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15

Takhar, Arjun Singh. "Gastrin and its interactions in the adenoma-carcinoma sequence in the colon." Thesis, University of Nottingham, 2006. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.445695.

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16

Möller, Steffen. "An environment for consistent sequence annotation and its application to transmembrane proteins." Thesis, University of Cambridge, 2003. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.619671.

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17

Carter, Michael. "Characterisation of a DNA tetrahedron and its interaction with sequence-specific ligands." Thesis, University of Southampton, 2015. https://eprints.soton.ac.uk/388504/.

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Nanostructures engineered from DNA are becoming increasing popular in interdisciplinary research laboratories globally due to their ease to design and build, as well as their huge potential as devices for applications such as drug delivery and biosensors. Although many studies have used these structures alongside molecules that interact with DNA, little has been done to understand the effects of nanostructured DNA on ligand binding, and vice versa. In this thesis, a simple DNA tetrahedron, folded from four oligonucleotides, is used as a model in which to assess ligand interactions for a variet

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18

Rutledge, Robert Gray Carleton University Dissertation Biology. "DNA sequence characterization of Xenopus laevis histone H5 and its evolutionary implications." Ottawa, 1986.

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19

Yim, Cheuk-hon Terence. "Approximate string alignment and its application to ESTs, mRNAs and genome mapping." Click to view the E-thesis via HKUTO, 2004. http://sunzi.lib.hku.hk/hkuto/record/B31455736.

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20

鄭智強 and Chi-keung Cheng. "Structural organization of the mouse testin gene and characterization of its promoter sequence." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2000. http://hub.hku.hk/bib/B31224106.

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21

Hills, Mark. "The Xp/Yp telomere and its adjacent DNA : structure, sequence organisation and mutation." Thesis, University of Leicester, 2004. http://hdl.handle.net/2381/30355.

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My research has focused on developing an understanding of processes operating in and around the Xp/Yp telomere, combined with detailed analysis of the unusual properties seen immediately adjacent to it. To this end, 7 kb of telomere adjacent-sequence was analysed, revealing a SNP density, pi, of 1.73 x 10-3 across the first 3 kb, 2-fold above average genome level. Furthermore, the sequence analysis revealed a 1.9 kb tandem duplication in 86% of chromosomes. This included the minisatellite DXYS14, and both copies were found to be hypervariable, with pedigree analysis revealing mutation rates of

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22

Cheng, Chi-keung. "Structural organization of the mouse testin gene and characterization of its promoter sequence." Hong Kong : University of Hong Kong, 2000. http://sunzi.lib.hku.hk/hkuto/record.jsp?B22424763.

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23

Lee, Thomas Ming Hung. "Sequence-specific electrochemical DNA detection and its implementation in integrated PCR-electrochemical microdevices /." View Abstract or Full-Text, 2003. http://library.ust.hk/cgi/db/thesis.pl?CENG%202003%20LEE.

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Thesis (Ph. D.)--Hong Kong University of Science and Technology, 2003.<br>Includes bibliographical references (leaves 155-177). Also available in electronic version. Access restricted to campus users.

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24

Silva, Jurema Rosa de Queiroz. "Caracterização da diversidade genética de isolados Amazônicos de Crinipellis perniciosa oriundos de tecido infectado de Theobroma cacao." Universidade de São Paulo, 2007. http://www.teses.usp.br/teses/disponiveis/64/64133/tde-21052007-103823/.

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A doença vassoura-de-bruxa do cacaueiro (Theobroma cacao), causada pelo basidiomiceto Crinipellis perniciosa, levou a total destruição da lavoura sul-baiana, previamente cultivada principalmente com variedades altamente suscetíveis, tornando o Brasil, um país tipicamente exportador de cacau em importador em poucos anos. A perda da resistência do genótipo ?Scavina 6?, única fonte de resistência reconhecida contra C. perniciosa, está associada à variabilidade genética do patógeno. Diante disto, o objetivo deste estudo foi caracterizar a diversidade genética de isolados de C. perniciosa derivados

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25

Milbury, Coren A. "The mitochondrial genome of the eastern oyster, Crassostrea virginica the complete DNA sequence and its application in local restoration efforts /." Access to citation, abstract and download form provided by ProQuest Information and Learning Company; downloadable PDF file, 240 p, 2007. http://proquest.umi.com/pqdweb?did=1397966801&sid=11&Fmt=2&clientId=8331&RQT=309&VName=PQD.

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26

Tristem, Michael. "Sequence of a novel isolate of HIV-2 and its relationship to other lentiviruses." Thesis, University of Cambridge, 1991. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.239787.

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27

Riley, Susan. "Molecular analysis of the human X-chromosomal hypervariable sequence (DXS255) and its surrounding region." Thesis, University of Oxford, 1993. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.335814.

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28

Gudnason, Vilmundur Gardar. "Sequence variation in the LDL receptor gene, and its effect on plasma lipid levels." Thesis, University College London (University of London), 1995. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.309130.

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29

Thimmapuram, Sunethra. "Web-Delivered Assembly Language Interactive Training and its Sequence Identification for Software Reverse Engineering." Wright State University / OhioLINK, 2017. http://rave.ohiolink.edu/etdc/view?acc_num=wright151551307959276.

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30

Lemaigre, Charlotte. "Childhood trauma and its psychosocial sequelae : a thesis portfolio." Thesis, University of Edinburgh, 2017. http://hdl.handle.net/1842/25689.

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Background: It is widely understood that survivors of childhood trauma (emotional abuse, physical abuse, sexual abuse and emotional, physical neglect) have poorer mental health outcomes than their non-abused counterparts; one of which is an increased risk of suicidality. The disclosure of childhood abuse is key to safeguarding against further victimization and promoting better psychosocial outcomes for survivors in the long-term. Aims: The aims of this thesis portfolio are twofold. Firstly, to review the published literature investigating the barriers and facilitators to disclosing sexual abus

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31

Alyasiri, Inaam Hassan Rauf. "Unfolding Correction Sequences in Classroom Interaction and its Relevance to Face-work." Thesis, Linköpings universitet, Institutionen för kultur och kommunikation, 2014. http://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-107550.

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This paper discusses correction sequences in classroom interaction when teachers correct students’ erroneous answers. The focus of this paper is the relevance between types and techniques of correction used by teachers to correct students’ answers and face-work. The study explains face-work necessity in classroom interaction since it increases students’ motivation to participate in classroom activities.

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32

Rong, Ying. "Phylogeny of the genus Gossypium and genome origin of its polyploid species inferred from variation in nuclear repetitive DNA sequences." Texas A&M University, 2004. http://hdl.handle.net/1969.1/3161.

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Knowledge of phylogenetic relationships among taxa is essential for comparative and evolutionary genomic research. Here, we report reconstruction of the phylogenetic tree of the genus Gossypium containing cultivated cottons of importance in agriculture by using variation of nuclear repetitive DNA sequences. Genomic DNA was isolated from 87 available accessions of 35 species representing all eight basic genome groups of the genus Gossypium and analyzed to infer phylogeny of the genus and genome origin of its polyploid species. Twenty-two interspersed repeated sequence clones derived from G. hir

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33

Maze, Kristal E. "Molecular phylogenetics of Widdringtonia Endl. (Cupressaceae) based on ITS1 sequences of nuclear ribosomoal DNA." Thesis, University of Cape Town, 1993. http://hdl.handle.net/11427/25613.

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34

Woods, Kristi Yvonne. "Nymphaea odorata (Water-lily, Nymphaeaceae): Analyses of molecular and morphological studies." Thesis, Virginia Tech, 2003. http://hdl.handle.net/10919/41234.

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Molecular and morphologic studies were used to determine the evolution, classification and differentiation of Nymphaea odorata. Molecular analyses of the nuclear internal transcribed spacer (ITS) region, the chloroplast trnL-F region, and inter-simple sequence repeat (ISSR) markers determined the variation present between and within two species of Nymphaea. The ITS region resulted in a phylogeny depicting strong separation between species (N. mexicana and N. odorata) and some separation between N. odorataâ s subspecies. The ITS region contained polymorphisms, which upon SAHN clustering and

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35

Wong, Marisa Lin. "Sequence analysis of the murine high growth (hg) deletion and expression profiling of its associated genes /." For electronic version search Digital dissertations database. Restricted to UC campuses. Access is free to UC campus dissertations, 2004. http://uclibs.org/PID/11984.

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36

Derman, Hasan Armasan. "Sequence Stratigraphic Architecture Of Mut Basin Along Ramp To Reefal Margin Transition And Its Diagenetic Imprint." Master's thesis, METU, 2004. http://etd.lib.metu.edu.tr/upload/1259480/index.pdf.

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The whole Mediterranean was a site of carbonate deposition during Miocene. Unlike other Miocene basins in the Mediteranean, the importance of Mut Basin lies in its tectonically undisturbed nature that provides excellent exposures to study sequence stratigraphic architecture and carbonate sedimentology. Opening of Mut Basin began during Oligocene<br>carbonate deposition started during Early Miocene. The pre-Miocene rocks are characterized by (from bottom to top), 1. ophiolites and Mesozoic limestones, 2. Eocene lacustrine limestones, 3. Burdigalian fluvial sandstones and conglomerates. The carb

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37

Clowes, Emma. "A microbiostratigraphical analysis of the Kolbano sequence (Jurassic to Pliocene), West Timor, and its radiolarian faunas." Thesis, University College London (University of London), 1997. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.265805.

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38

Hamed, Mohamed [Verfasser]. "A nuclear export sequence in Nup214 promotes its targeting to the nuclear pore complex / Mohamed Hamed." Göttingen : Niedersächsische Staats- und Universitätsbibliothek Göttingen, 2020. http://d-nb.info/1220504505/34.

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39

Yin, Xianglin. "Synthesis of Highly Ordered Sequence Distributions of Brominated PLA and Its Comonomers by Protection/Deprotection Methods." University of Akron / OhioLINK, 2014. http://rave.ohiolink.edu/etdc/view?acc_num=akron1396819755.

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40

Lu, Ying. "On TESTGEN, an environment for protocol test sequence generation, and its application to the FDDI MAC protocol." Thesis, University of British Columbia, 1991. http://hdl.handle.net/2429/30081.

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Test suite generation and selection form important aspects of conformance testing. The test suite generation process is usually tedious and time-consuming. The selection of appropriate test cases with certain fault coverage requires intensive analysis of the protocol. It is difficult to manually generate test suites without errors. The test suite generation process must therefore be automated. This thesis addresses the issues of design and development of the front end of an automatic test suite generation and selection environment named TESTGEN. TESTGEN generates TTCN test suites from the for

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41

Petrovic, Vojislav. "The K(n)-local E n-Adams Spectral Sequence and a Cohomological Approximation of its E2-term." Thesis, University of Louisiana at Lafayette, 2018. http://pqdtopen.proquest.com/#viewpdf?dispub=10623147.

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<p> Let <i>n</i> ≥ 1 be any integer and let <i>p</i> be a prime number. For a profinite group <i>G</i> and any discrete abelian group <i>M</i>, we use Map<sup>c</sup>(<i>G, M </i>) to denote the abelian group of continuous functions from <i> G</i> to <i>M</i>. For the most part, our interests lie in a particular profinite group known as the extended Morava stabilizer group. Denoted by <i>G<sub>n</sub></i>, this profinite group is the semi-direct product of the Morava stabilizer group Sn with the Galois group of the field extension <b>F</b><i><sub>p<sup>n</sup></sub></i>/<b> F</b><i><sub>p</

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42

Thompson, Patricia Maeve Eleanor. "Petrology and geochronology of an arc sequence, Bonaire, Dutch Antilles, and its relationship to the Caribbean Plateau." Thesis, University of Leicester, 2002. http://hdl.handle.net/2381/30452.

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Oceanic plateau rocks, island arc fragments and tonalitic batholiths are juxtaposed on the southern Caribbean margin, and appear to be both spatially and temporally related. It is widely accepted that the plateau originated in the Pacific realm, and although there is no consensus as to which hotspot it was derived from, Galapagos is frequently cited. A previous study concluded that one of the tonalitic batholiths, the 85 Ma Aruba batholith was generated from the first stages of subduction beneath the 90 Ma plateau, following a subduction polarity reversal. Until this study, little was known ab

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43

Gilmore, Luther Martin. "DNA sequence analysis of the rDNA ITS 1/2 region in the evolutionary delineation of the Pilobolaceae." Virtual Press, 2006. http://liblink.bsu.edu/uhtbin/catkey/1348863.

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This project represents an initial examination of the evolutionary history of the genus Pilobolus, and provides a starting point for developing a method to accurately classify members of this genus using molecular genetics. The data analysis presented in this paper suggests a potential evolutionary path in which P. umbonatus and P. sphaerosporus diverged (along a common path) from an original generic ancestor early, but independently, from the evolutionary course taken by P. kleinii. Both Maximum Likelihood and parsimony analyses concur in the branch patterns. Additionally, formation of specie

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44

Beigi, Mazda. "Incidental motor sequence learning : investigations into its cognitive basis and the effects of neurological impairment and treatment." Thesis, Brunel University, 2013. http://bura.brunel.ac.uk/handle/2438/7303.

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To survive in a complex changing environment humans frequently need to adapt their behaviour incidentally from normal interactions in the environment without any specific intention to learn. Whilst there is a considerable body of research into incidental learning of sequential information there is still fundamental debate regarding its cognitive basis, the associated neural mechanisms and the way in which it is affected by neurological disease. These issues were explored, in normal participants and neurological patients, using manipulations of the Serial Reaction Task [SRT] in which participan

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45

Koetschan, Christian. "The Eukaryotic ITS2 Database - A workbench for modelling RNA sequence-structure evolution." Doctoral thesis, 2012. https://nbn-resolving.org/urn:nbn:de:bvb:20-opus-73128.

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In den vergangenen Jahren etablierte sich der Marker „internal transcribed spacer 2" (ITS2) zu einem häufig genutzten Werkzeug in der molekularen Phylogenetik der Eukaryoten. Seine schnell evolvierende Sequenz eignet sich bestens für den Einsatz in niedrigeren phylogenetischen Ebenen. Die ITS2 faltet jedoch auch in eine sehr konservierte Sekundärstruktur. Diese ermöglicht die Unterscheidung weit entfernter Arten. Eine Kombination aus beiden in einer Sequenzstrukturanalyse verbessert die Auflösung des Markers und ermöglicht die Rekonstruktion von robusteren Bäumen auf höherer taxonomischer Brei

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46

Lee, Chang-Hui, and 李常暉. "The Identification of Nucleotide Sequence Polymorphisms and Gene Resources for Cinnamomum osmophloeum Kaneh. Based on ITS2 Ribosomal DNA and trnL-trnF Chloroplast DNA Sequences." Thesis, 2011. http://ndltd.ncl.edu.tw/handle/74370153021942348019.

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碩士<br>中國文化大學<br>生物科技研究所<br>99<br>Cinnamomum osmophloeum Kaneh. (CO) belongs to the Lauraceae family. It is considerable market demand, because not only can be used as traditional Chinese edicine but also as a spice. Traditionally, morphological or histological identification of plants using characteristics of the effect is limited. In particular, the characteristics can be distinguished in the seedlings stage are less, so that difficult to distinguish. And type of identification may lead to mixing or misuse of medicinal plants. Therefore, we used DNA molecular marker technology to identify Cin

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47

Jiang, Yanan master of cellular and molecular biology. "Manual alignment of IVS sequences and its implication in multiple sequence alignment." Thesis, 2011. http://hdl.handle.net/2152/ETD-UT-2011-12-4706.

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It is recognized that an iterative comparative analysis of large-scale homologous RNAs significantly promote the understanding of an RNA family. The Gutell lab is renowned for maintaining high quality RNA sequence alignments and accurately predicted RNA secondary structures using this approach. While the current available alignment and structure data are mainly obtained by trained domain experts with extensive manual effort, it is highly desired that this process is automated and replicable given the exponentially growing number of RNA sequence data and the amount of time required for expert t

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48

Zhang, Ying. "Sequence to sequence learning and its speech applications." Thèse, 2018. http://hdl.handle.net/1866/21287.

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49

"Graphical representation of biological sequences and its applications." Thesis, 2010. http://library.cuhk.edu.hk/record=b6074915.

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Among all existing alignment-free methods for comparing biological sequences, the sequence graphical representation provides a simple approach to view, sort, and compare gene structures. The aim of graphical representation is to display DNA or protein sequences graphically so that we can easily find out visually how similar or how different they are. Of course, only the visual comparison of sequences is not enough for the follow-up research work. We need more accurate comparison. This leads us to develop the application of the graphical representation for biological sequences.<br>In this thesi

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50

Barik, Biswajit. "Lucas sequence, its properties and generalisation." Thesis, 2013. http://ethesis.nitrkl.ac.in/5270/1/411MA2130.pdf.

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