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Journal articles on the topic 'Journal publication; data; code'

Author: Grafiati

Published: 5 June 2025

Last updated: 2 August 2025

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1

Rahayuda, I. Gede Surya, and Ni Putu Linda Santiari. "Web Harvesting for Data Retrieval on Scientific Journal Sites." Jurnal Informatika Universitas Pamulang 6, no. 1 (2021): 202. http://dx.doi.org/10.32493/informatika.v6i1.10077.

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Publishing scientific articles online in journals is a must for researchers or academics. In choosing the journal of purpose, the researcher must look at important information on the journal's web, such as indexing, scope, fee, quarter and other information. This information is generally not collected in one page, but spread over several pages in a web journal. This will be complicated when researchers have to look at information in several journals, moreover, the information in these journals may change at any time. In this research, web harvesting design is conducted to retrieve information

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Lotfipanah, Mahdi. "UTILITY AND IMPACT OF QR CODES AND BARCODES IN SCHOLARLY JOURNALS." International Journal of Research -GRANTHAALAYAH 8, no. 5 (2020): 51–54. http://dx.doi.org/10.29121/granthaalayah.v8.i5.2020.55.

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In 1994 a squared two-dimensional barcode was invented by Toyota Company which changed and speed up the concept of tracking and identification. They chose its name QR which stands for Quick Response code. Quick Response codes can convey data such as show a geographical location, make a phone call, link to a simple text, link to a website or template email, access to a portable document format (PDF), display an image, link and download a specific application on a mobile device or Wi-Fi login. Academic journal leaders should notice that QR code as a unique shaped matrix code is increasingly bein

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Mahdi, Lotfipanah. "UTILITY AND IMPACT OF QR CODES AND BARCODES IN SCHOLARLY JOURNALS." International Journal of Research -GRANTHAALAYAH 8, no. 5 (2020): 51–54. https://doi.org/10.29121/granthaalayah.v8.i5.2020.55.

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In 1994 a squared two -dimensional barcode was invented by Toyota Company which changed and speed up the concept of tracking and identification. They chose its name QR which stands for Quick Response code. Quick Response codes can convey data such as show a geographical location, make a phone call, link to a simple text, link to a website or temp late email, access to a portable document format (PDF), display an image, link and download a specific application on a mobile device or Wi- Fi login. Academic journal leaders should notice that QR code as a unique shaped matrix code is increasingly b

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Höffler, Jan H. "Replication and Economics Journal Policies." American Economic Review 107, no. 5 (2017): 52–55. http://dx.doi.org/10.1257/aer.p20171032.

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Economics journals with reproducibility policies are cited more often than others. For the minority of journals with a mandatory and enforced policy, this is significant when controlling for time and journal effects. To cope with the large variety of software used and to develop standards for replicability, joint efforts of journals could ensure each empirical study is published with data, code, and instructions on how to use them together. Individual reviewers could take initiative by asking for replicable empirical results. The American Journal of Political Science sets an example by having

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Shamsi-Gooshki, Ehsan, Hasan Bagheri, and Mahmood Salesi. "Evaluation of Iranian Medical Journals from the Perspective of Publication Ethics." Archives of Iranian Medicine 23, no. 10 (2020): 697–703. http://dx.doi.org/10.34172/aim.2020.88.

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Background: Scientific journals will gain real credit when they meet publication ethics standards. This study seeks to evaluate the current status of medical journals’ adherence to some ethical standards. Methods: The 412 scientific journals approved by the Ministry of Health and Medical Education were included in this study. The process of downloading articles and data extraction for seven general and specific indicators related to publication ethics was conducted by trained researchers. Different methods were implemented by the team of colleagues to prevent possible errors in data extraction

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Lebrun, Renaud, and Maëva J. Orliac. "MORPHOMUSEUM: AN ONLINE PLATFORM FOR PUBLICATION AND STORAGE OF VIRTUAL SPECIMENS." Paleontological Society Papers 22 (September 2016): 183–95. http://dx.doi.org/10.1017/scs.2017.14.

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AbstractSince the early 1990s, methods for the acquisition of three-dimensional (3-D) data and computer-assisted techniques for the visualization of such data have grown increasingly popular among biologists, paleontologists, and paleoanthropologists. However, thus far no standardized repository for complex virtual models based on 3-D digital data of specimens has emerged, whereas the need for researchers to provide access to 3-D models of specimens as well as the pressure imposed on authors by scientific journals to make original 3-D morphological data publicly available have increased. Morph

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Stockemer, Daniel, Sebastian Koehler, and Tobias Lentz. "Data Access, Transparency, and Replication: New Insights from the Political Behavior Literature." PS: Political Science & Politics 51, no. 4 (2018): 799–803. http://dx.doi.org/10.1017/s1049096518000926.

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ABSTRACTDo researchers share their quantitative data and are the quantitative results that are published in political science journals replicable? We attempt to answer these questions by analyzing all articles published in the 2015 issues of three political behaviorist journals (i.e., Electoral Studies, Party Politics, and Journal of Elections, Public Opinion & Parties)—all of which did not have a binding data-sharing and replication policy as of 2015. We found that authors are still reluctant to share their data; only slightly more than half of the authors in these journals do so. For tho

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Christian, Thu-Mai Lewis, Sophia Lafferty-Hess, William G. Jacoby, and Thomas Carsey. "Operationalizing the Replication Standard." International Journal of Digital Curation 13, no. 1 (2018): 114–24. http://dx.doi.org/10.2218/ijdc.v13i1.555.

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In response to widespread concerns about the integrity of research published in scholarly journals, several initiatives have emerged that are promoting research transparency through access to data underlying published scientific findings. Journal editors, in particular, have made a commitment to research transparency by issuing data policies that require authors to submit their data, code, and documentation to data repositories to allow for public access to the data. In the case of the American Journal of Political Science (AJPS) Data Replication Policy, the data also must undergo an independe

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Willekens, Frans. "Programmatic access to open statistical data for population studies. The SDMX standard." Demographic Research 49, no. 40 (2023): 1117–62. https://doi.org/10.5281/zenodo.10221972.

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This publication contains supporting files for the publication "Programmatic access to open statistical data for population studies.The SDMX standard" in the Demographic Research journal (www.demographic-research.org). The files are:a. ProgrammaticAccessDR.Rmd: R Markdown document. The paper was prepared using R Markdown in RStudio. The Rmd document contains all the code used in the paper.  R version 4.2.1 (2022) and version 4.3.1, (2023-06-16) on Platform: aarch64-apple-darwin20 (64-bit)) and RStudio Version 2023.03.0+386 were used. Appendix A of the published paper describes how to inst

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Buckley, Yvonne M., Richard Bardgett, Rowena Gordon, et al. "Using dynamic documents to mend cracks in the reproducible research pipeline." Journal of Ecology 113, no. 2 (2025): 270–74. https://doi.org/10.1111/1365-2745.14454.

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Abstract There is a research reproducibility crisis, including in ecology. The research pipeline from conception to publication has many cracks, which means that it may not be possible to repeat and verify published results. Reproducibility means that the results of a study can be reproduced from the original data. It is a critical step in the quality assurance of a study; indeed, the re‐use and subsequent citation of methods from reproducible research can increase the impact of the work beyond the findings of the specific study. Given the original data, code and documentation, in theory, all

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Jones, David Martin. "INTRODUCTION TO JATI-JOURNAL OF SOUTHEAST ASIAN STUDIES, VOLUME 26(2), DECEMBER 2021." Journal of Southeast Asian Studies 26, no. 2 (2021): 1——. https://doi.org/10.22452/jati.vol26no2.1.

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JATI PUBLICATION ETHICS & PUBLICATION MALPRACTICE STATEMENT: These guidelines are fully consistent with the COPE Principles of Transparency and Best Practice Guidelines and the COPE Code of Conduct (https://publicationethics.org). We encourage the best standards of publication ethics and take all possible principles of transparency and measures against publication malpractices. The Department of Southeast Asian Studies, as the publisher, plays its role of guardianship over all processes of publishing seriously, and we perform our ethical and other tasks. General duties and responsibilities

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Kwak, Jae Hyun. "Research Publication Ethics for Medical Researchers." Journal of Korean Medical Library Association 44, no. 1_2 (2017): 27–38. http://dx.doi.org/10.69528/jkmla.2017.44.1_2.27.

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Research ethics has been underlined as environments of research became result-oriented. It has various regulations and guidelines today, and researchers have to aware of each cases of them. Research integrity is the key principles to guarantee the transparency and truthfulness of the scientific content. Based on research integrity, ethics includes regulations and guidelines which regulate both research misconduct and questionable research practices. Most important and critical misconduct is fabrication, falsification, and plagiarism. It seriously damage the research integrity. Researchers shou

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Penev, Lyubomir, Daniel Mietchen, Vishwas Chavan, et al. "Strategies and guidelines for scholarly publishing of biodiversity data." Research Ideas and Outcomes 3 (February 28, 2017): e12431. https://doi.org/10.3897/rio.3.e12431.

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The present paper describes policies and guidelines for scholarly publishing of biodiversity and biodiversity-related data, elaborated and updated during the Framework Program 7 EU BON project, on the basis of an earlier version published on Pensoft's website in 2011. The document discusses some general concepts, including a definition of datasets, incentives to publish data and licenses for data publishing. Further, it defines and compares several routes for data publishing, namely as (1) supplementary files to research articles, which may be made available directly by the publisher, or (2) p

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Dimitrova, Mariya, Raïssa Meyer, Pier Luigi Buttigieg, et al. "Streamlined Conversion of Omics Metadata into Manuscript Facilitates Publishing and Reuse of Omics Data." Biodiversity Information Science and Standards 4 (September 28, 2020): e59041. https://doi.org/10.3897/biss.4.59041.

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Data papers have started to gain popularity as a publishing format that allows easy and quick publishing of research data (Chavan and Penev 2011, Penev et al. 2017). They describe single or multiple datasets and the methodologies required for their generation. Similar to traditional research articles, data papers and the underlying datasets are peer-reviewed. In this poster, we demonstrate how data papers can be used to incentivise researchers producing omics datasets to increase the quality of the metadata descriptors and the data itself through the journal authoring, peer review and publicat

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Gonzalez-Argote, Denis, and Javier Gonzalez-Argote. "Generation of graphs from scientific journal metadata with the OAI-PMH system." Seminars in Medical Writing and Education 2 (December 23, 2023): 43. http://dx.doi.org/10.56294/mw202343.

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Access to scientific and scholarly information has become more accessible than ever before, in large part due to the proliferation of scholarly journals that use metadata systems to expose their content. Notable examples of these systems include the Open Journal Systems (OJS) and the Objects of Learning Metadata Protocol (OAI-PMH), which have significantly simplified the dissemination of research online. However, as these platforms have become essential for research publication and dissemination, new needs arise for publishers and scholars. A technological innovation-type study was conducted b

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Jayatunga, Wikum, Philip Stone, Robert W. Aldridge, Jennifer K. Quint, and Julie George. "Code sets for respiratory symptoms in electronic health records research: a systematic review protocol." BMJ Open 9, no. 3 (2019): e025965. http://dx.doi.org/10.1136/bmjopen-2018-025965.

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IntroductionAsthma and chronic obstructive pulmonary disease (COPD) are common respiratory conditions, which result in significant morbidity worldwide. These conditions are associated with a range of non-specific symptoms, which in themselves are a target for health research. Such research is increasingly being conducted using electronic health records (EHRs), but computable phenotype definitions, in the form of code sets or code lists, are required to extract structured data from these large routine databases in a systematic and reproducible way. The aim of this protocol is to specify a syste

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Brown, Daniel R., Robert F. Whitcomb, and Janet M. Bradbury. "Revised minimal standards for description of new species of the class Mollicutes (division Tenericutes)." International Journal of Systematic and Evolutionary Microbiology 57, no. 11 (2007): 2703–19. http://dx.doi.org/10.1099/ijs.0.64722-0.

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Minimal standards for novel species of the class Mollicutes (trivial term, mollicutes), last published in 1995, require revision. The International Committee on Systematics of Prokaryotes Subcommittee on the Taxonomy of Mollicutes proposes herein revised standards that reflect recent advances in molecular systematics and the species concept for prokaryotes. The mandatory requirements are: (i) deposition of the type strain into two recognized culture collections, preferably located in different countries; (ii) deposition of the 16S rRNA gene sequence into a public database, and a phylogenetic a

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de, Jager Marjolein, Frank Smallenburg, and Laura Filion. "In search of a precursor for crystal nucleation of hard and charged colloids." Journal of Chemical Physics 159, no. 13 (2023): 134902. https://doi.org/10.5281/zenodo.8337501.

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Data package accompanying the publication with the above title in the Journal of Chemical Physics (2023). This package provides all the relevant information for the numerical study of crystal nucleation of hard and charged colloids. We strived to answer the question: are there hidden local structures present in metastable fluid that foreshadow the location of the imminent formation of a crystal nucleus? To this end, we obtained numerous spontaneous nucleation events of both hard and charged colloids using computer simulations, and tracked the onset of crystal nucleation on a local level. We us

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Mirkin, B. M., and L. G. Naumova. "Dynamics of activity syntaxonomic centres of Russia and processes of their integration." Vegetation of Russia, no. 31 (2017): 119–24. http://dx.doi.org/10.31111/vegrus/2017.31.119.

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The history of «rooting» and current state of the Braun-Blanquet approach in Russia are discussed. The process began only in the 1960s, when a more favorable climate has developed in Soviet science, and researches showed interest in the following international principles of vegetation classification. However, at that time they used, as a rule, palliative options in which «Russian» criteria (dominants) were combined with «floristic» ones. As a rule, such schemes were not successful and gave rise to imbalances in syntaxonomy. After the year 1981, when the VI All-Union conference on the classific

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Johnson, Matthew R., Nick J. Wagner, and Jonathan Reusch. "Publication trends in top-tier journals in higher education." Journal of Applied Research in Higher Education 8, no. 4 (2016): 439–54. http://dx.doi.org/10.1108/jarhe-01-2015-0003.

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Purpose The purpose of this paper is to analyze author and methodological characteristics in top-tier publications in higher education. As the importance of research in the professoriate continues to grow and faculty face ratcheted-up expectations for prestige in their research, such data are important contextually and historically. Design/methodology/approach This descriptive study examines 587 articles within four top-tier higher education research journals from 2008 to 2012. Data were open coded and analyzed with a research team, resulting in an intercoder reliability of 0.96. Findings Resu

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Simanjuntak, Hotman Jonathan, Muhammad Imanulloh, Muhamad Adrian, El Hadid, Puji Rahayu, and Elin Cahyaningsih. "Tren dan Tantangan Implementasi Domain Driven Design dalam Era Digital." Jurnal Nasional Komputasi dan Teknologi Informasi (JNKTI) 7, no. 4 (2024): 997–1004. https://doi.org/10.32672/jnkti.v7i4.7851.

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Abstrak - Jurnal ini mengkaji tren dan tantangan implementasi Domain-Driven Design (DDD) dalam era digital. Analisis bibliometrik menggunakan Publish or Perish dan VOSviewer untuk mengidentifikasi, mengumpulkan, dan menganalisis data publikasi terkait DDD dari berbagai sumber ilmiah. Hasil menunjukkan tren penerapan DDD yang beragam dalam berbagai jenis aplikasi, dengan fokus pada pengembangan microservice, low-code development, model-driven engineering, dan knowledge-based systems. Tantangan utama yang diidentifikasi adalah kompleksitas pemodelan domain, perubahan model domain, dan integrasiD

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Trisovic, Ana. "Cluster Analysis of Open Research Data: A Case for Replication Metadata." International Journal of Digital Curation 17, no. 1 (2023): 13. http://dx.doi.org/10.2218/ijdc.v17i1.833.

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Research data are often released upon journal publication to enable result verification and reproducibility. For that reason, research dissemination infrastructures typically support diverse datasets coming from numerous disciplines, from tabular data and program code to audio-visual files. Metadata, or data about data, is critical to making research outputs adequately documented and FAIR. Aiming to contribute to the discussions on the development of metadata for research outputs, I conducted an exploratory analysis to determine how research datasets cluster based on what researchers organical

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Khany, Reza, and Peyman Valizadeh. "The Scope of Second Language Teacher Education Research from 1980 to 2020: A Systematic Review." Language Teaching Research Quarterly 38 (December 2023): 34–64. http://dx.doi.org/10.32038/ltrq.2023.38.03.

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This paper presents a comprehensive and rigorous systematic review of the trajectories and challenges in Research Articles (RAs) of Second Language Teacher Education (SLTE) from 1980 to 2020. The RAs were carefully retrieved from two sources: (1) a pool of 100 top-tier journals based on SCImago Journal Ranking (SJR) in Linguistics and Language category and (2) seven well-known electronic databases. This study used thematic analysis. After conducting full-text screening and data extraction, each study was systematically coded for publication contents, themes, theories, and variable levels. Each

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Moreau, David, and Kristina Wiebels. "Nine quick tips for open meta-analyses." PLOS Computational Biology 20, no. 7 (2024): e1012252. http://dx.doi.org/10.1371/journal.pcbi.1012252.

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Open science principles are revolutionizing the transparency, reproducibility, and accessibility of research. Meta-analysis has become a key technique for synthesizing data across studies in a principled way; however, its impact is contingent on adherence to open science practices. Here, we outline 9 quick tips for open meta-analyses, aimed at guiding researchers to maximize the reach and utility of their findings. We advocate for outlining preregistering clear protocols, opting for open tools and software, and the use of version control systems to ensure transparency and facilitate collaborat

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Mercado-Asis, Leilani B., and Ma Lourdes D. Maglinao. "Improving Systems to Promote Research Integrity." Journal of Medicine, University of Santo Tomas 6, S1 (2022): S32—S38. http://dx.doi.org/10.35460/2546-1621.2022-sp05.

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Research integrity is manifested thru the use of honest and verifiable research methods with adherence to accepted professional codes. Recently, trustworthiness in research has been challenged by various forms of research misconduct, such as analytical flexibility, data dredging, HARKing (hypothesis after research knowledge), plagiarism, and selective and distorted reporting. Drivers of research misconduct have been identified as institutional--publication incentives to pursue a career, researcher--metric of success is publication volume, and the journal-- more likely to accept papers with pos

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Triwahyudi, Ferdy Achmad, and Indrawati Yuhertiana. "Penggunaan Quick Response Code Indonesian Standard (QRIS) Sebagai Sistem Pembayaran Digital: Analisis Bibliometrik." Journal of Economic, Bussines and Accounting (COSTING) 7, no. 4 (2024): 7334–46. http://dx.doi.org/10.31539/costing.v7i4.10274.

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This study aims to determine the development of publications on the topic of using Quick Response Indonesian Standard (QRIS) as a digital payment system from 2018-2023 and find out scientific articles that have the highest number of citations on the topic of using Quick Response Indonesian Standard (QRIS) as a digital payment system. Data collection was carried out using Google Scholar with QRIS keywords and digital payment systems. With the categories used, namely article titles, abstracts, and keywords in vulnerable time 2018-2023. Search results show that there are 568 articles, but that nu

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Bocanegra-Valle, Ana. "Engaging in predatory practices: How editors persuade prospective authors." Círculo de Lingüística Aplicada a la Comunicación 93 (February 9, 2023): 117–29. http://dx.doi.org/10.5209/clac.82441.

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A number of studies have explored the main features of predatory practices that prevail in predatory academic journals and conferences. However, not much has been investigated regarding the ways predatory journal editors convey credibility and trustworthiness when addressing scholars looking for publication outlets and, more specifically, what interpersonal resources (like proximity or engagement markers) are used to persuade them. This study draws on a dataset of fifty email messages from predatory publishers collected during the past two years. It seeks to delve into the ways predatory journ

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Supriatin, Supriatin, Alex Rizky Saputra, and Budy Satria. "IMPLEMENTATION OF ARAS ALGORITHM ON DECISION SUPPORT SYSTEM TO DETERMINE THE BEST LECTURER." JITK (Jurnal Ilmu Pengetahuan dan Teknologi Komputer) 8, no. 1 (2022): 25–32. http://dx.doi.org/10.33480/jitk.v8i1.3152.

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In the world of higher education, lecturers are one of the main components in building quality and quantity. Good quality will give good results as well, to improve the quality of each lecturer, it is necessary to have an award given to lecturers from the campus so that it becomes a motivation for lecturers to improve the quality given to students and the community. Amik Mitra Gama is a private campus located in the Duri Riau area, in this case to improve the quality of education one of the steps taken is to give awards and appreciation to the best lecturers who will be selected every year. To

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Rajbhandari, Sachit, Katherine Tattersall, and Dave Watts. "Advancing Data Standardisation: OBIS Australia's Contribution to Marine Biodiversity Data Publishing in Australia." Biodiversity Information Science and Standards 8 (November 6, 2024): e141114. https://doi.org/10.3897/biss.8.141114.

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OBIS Australia (OBIS-AU), a regional node of the Ocean Biodiversity Information System (OBIS), promotes the use of Darwin Core (DwC) (Wieczorek et al. 2012) as a standard for marine biodiversity data publishing across the Australian region. OBIS-AU is hosted by Commonwealth Scientific and Industrial Research Organisation (CSIRO) National Collections and Marine Infrastructure (NCMI) and has published over 36 million DwC records from 480 marine biodiversity datasets, establishing itself as a key contributor to the OBIS network. The OBIS-AU publishing workflow leverages centralised data transform

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Kirkman, Noreen. "Article processing charges and fully open access journals: National Health and Medical Research Council funded articles." Journal of Health Information and Libraries Australasia 2, no. 3 (2021): 39–56. http://dx.doi.org/10.55999/johila.v2i3.85.

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Introduction: The National Health and Medical Research Council, Australia’s largest medical research funder, mandates open access for journal articles published from funded research. Publishing articles in fully open access journals is an acceptable route to achieve compliance. However, the total cost of article processing charges and the extent to which Council funds contribute to payment are unknown.Objectives: The main objectives of this study were to calculate the cost of article processing charges and determine the extent of acknowledgement of payment for Council-funded articles published

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Nissen, Francis, Daniel R. Morales, Hana Mullerova, Liam Smeeth, Ian J. Douglas, and Jennifer K. Quint. "Validation of asthma recording in the Clinical Practice Research Datalink (CPRD)." BMJ Open 7, no. 8 (2017): e017474. http://dx.doi.org/10.1136/bmjopen-2017-017474.

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ObjectivesThe optimal method of identifying people with asthma from electronic health records in primary care is not known. The aim of this study is to determine the positive predictive value (PPV) of different algorithms using clinical codes and prescription data to identify people with asthma in the United Kingdom Clinical Practice Research Datalink (CPRD).Methods684 participants registered with a general practitioner (GP) practice contributing to CPRD between 1 December 2013 and 30 November 2015 were selected according to one of eight predefined potential asthma identification algorithms. A

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de, Jager Marjolein. "Exploring protein-mediated compaction of DNA by coarse-grained simulations and unsupervised learning." Biophysical Journal 123, no. 18 (2024): 3231–41. https://doi.org/10.5281/zenodo.12770995.

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Data package accompanying the publication with the above title in the Biophysical Journal (2024). This package provides all the relevant information for the numerical study of protein-mediated compaction of DNA. We investigated the role of protein-protein interactions in the protein-induced compaction of DNA. To this end, we presented a simple coarse-grained model to explore ~kbp DNA interacting with proteins of defined valency and concentration, and used unsupervised learning to define conformational states of the DNA-protein complexes and pathways between them. We applied our simulations and

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Singh, Harshdeep, Robert West, and Giovanni Colavizza. "Wikipedia citations: A comprehensive data set of citations with identifiers extracted from English Wikipedia." Quantitative Science Studies 2, no. 1 (2021): 1–19. http://dx.doi.org/10.1162/qss_a_00105.

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Abstract Wikipedia’s content is based on reliable and published sources. To this date, relatively little is known about what sources Wikipedia relies on, in part because extracting citations and identifying cited sources is challenging. To close this gap, we release Wikipedia Citations, a comprehensive data set of citations extracted from Wikipedia. We extracted29.3 million citations from 6.1 million English Wikipedia articles as of May 2020, and classified as being books, journal articles, or Web content. We were thus able to extract 4.0 million citations to scholarly publications with known

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Hernández-Ruiz, Alejandra. "Antifraud editorial policy in Spanish and Latin American scientific publication: JCR social sciences edition." Comunicar 24, no. 48 (2016): 19–27. http://dx.doi.org/10.3916/c48-2016-02.

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The process of publishing scientific papers should be based on universal principles of professional conduct: credibility, truth and authenticity. In academia, the inclusion of policies on ethical standards in journal instructions to authors could prevent misconduct and fraud in scientific publication. Due to the lack of attention to research ethics in the Social Sciences, in particular in Spain and Latin America, this research aims to analyze the scientific misconduct policy of the Spanish and Latin American journals in the JCR-Social Sciences Edition (2014). To achieve our goal, 104 selected

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Navarro, Carolina, Silvia Gonzalez-Morcillo, Carles Mulet-Forteza, and Salvador Linares-Mustaros. "A Bibliometric Analysis of the 35th anniversary of the paper "The Statistical Analysis of Compositional Data" by John Aitchison (1982)." Austrian Journal of Statistics 50, no. 2 (2021): 38–55. http://dx.doi.org/10.17713/ajs.v50i2.1066.

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This study presents a comprehensive bibliometric analysis of the paper published by John Aitchison in the Journal of the Royal Statistical Society. Series B (Methodological) in 1982. Having recently reached the milestone of 35 years since its publication, this pioneering paper was the first to illustrate the use of the methodology "Compositional Data Analysis" or "CoDA". By October 2019, this paper had received over 780 citations, making it the most widely cited and influential article among those using said methodology. The bibliometric approach used in this study encompasses a wide range of

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White, Richard K. A., Anton Angelo, Deborah Fitchett, et al. "Only two out of five articles by New Zealand researchers are free-to-access: a multiple API study of access, citations, cost of Article Processing Charges (APC), and the potential to increase the proportion of open access." PeerJ 9 (May 26, 2021): e11417. http://dx.doi.org/10.7717/peerj.11417.

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We studied journal articles published by researchers at all eight New Zealand universities in 2017 to determine how many were freely accessible on the web. We wrote software code to harvest data from multiple sources, code that we now share to enable others to reproduce our work on their own sample set. In May 2019, we ran our code to determine which of the 2017 articles were open at that time and by what method; where those articles would have incurred an Article Processing Charge (APC) we calculated the cost if those charges had been paid. Where articles were not freely available we determin

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Jaramillo, Manuel, Diego Carrión, Jorge Muñoz, and Luis Tipán. "A Bibliometric Assessment of AI, IoT, Blockchain, and Big Data in Renewable Energy-Oriented Power Systems." Energies 18, no. 12 (2025): 3067. https://doi.org/10.3390/en18123067.

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This study presents a systematic bibliometric review of digital innovations in renewable energy-oriented power systems, with a focus on Blockchain, Artificial Intelligence (AI), the Internet of Things (IoT), and Data Analytics. The objective is to evaluate the research landscape, trends, and integration potential of these technologies within sustainable energy infrastructures. Peer-reviewed journal articles published between 2020 and 2025 were retrieved from Scopus using a structured search strategy. A total of 23,074 records were initially identified and filtered according to inclusion criter

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McCarthy, Gregory J. "Laboratory Note. A LOTUS 1-2-3 Spreadsheet to Aid in Data Reduction for Publication of X-Ray Powder Diffraction Data." Powder Diffraction 3, no. 1 (1988): 39–40. http://dx.doi.org/10.1017/s0885715600013105.

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My students and I have developed a LOTUS 1-2-3 spreadsheet to aid in data reduction tasks associated with preparing powder diffraction data for publication in the Powder Diffraction File (PDF) (1987) and this journal. Portions of a sample spreadsheet and the formulae in each of the computational cells are given in the Table 1. The concept of this spreadsheet should apply to any of the available computer spreadsheet programs, although the specific codes for the mathematical functions may differ.The user enters data only into columns C, D and F-H. All other entries will be calculated from the in

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Manlapaz, Donald, Jose Avelino Vergara, Keisha Marie Bea Alpuerto, et al. "Perceptions of academic staff and students of senior high school in implementing game-based exercises in physical education classes—a research protocol for a qualitative descriptive study." BMJ Open 13, no. 12 (2023): e075847. http://dx.doi.org/10.1136/bmjopen-2023-075847.

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BackgroundThe COVID-19 pandemic has taken a toll on both physical activity and fitness as several pursuits and activities have been restricted. Coupled with this, increased food intake and sedentary lifestyles have produced poor physical health outcomes. Online physical education classes have been more difficult to conduct given the limitations of the setup. As such, exergaming has been identified as a possible educational tool that could improve students’ motivation, participation and fitness levels and reduce negative behaviours in class while contributing to the current curriculum.Objective

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Smith, Mike L., Andrzej K. Oleś, and Wolfgang Huber. "Authoring Bioconductor workflows with BiocWorkflowTools." F1000Research 7 (April 6, 2018): 431. http://dx.doi.org/10.12688/f1000research.14399.1.

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The Bioconductor Gateway on the F1000Research platform is a channel for peer-reviewed and citable publication of end-to-end data analysis workflows rooted in the Bioconductor ecosystem. In addition to the largely static journal publication, it is hoped that authors will also deposit their workflows as executable documents on Bioconductor, where the benefits of regular code testing and easy updating can be realized. Ideally these two endpoints would be met from a single source document. However, so far this has not been easy, due to lack of a technical solution that meets both the requirements

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Clarke, Shelley, Brittany N. Zakszeski, and Lee Kern. "Trends in JPBI Publications, 1999–2016." Journal of Positive Behavior Interventions 20, no. 1 (2017): 6–14. http://dx.doi.org/10.1177/1098300717722359.

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The field of positive behavior support (PBS) has expanded and evolved significantly since the first issue of Journal of Positive Behavior Interventions ( JPBI) was published. To ascertain how evolution of the field was reflected in the research, we examined trends in empirical studies published in JPBI since its inception. We coded 217 articles published between 1999 and 2016 that included data-based assessment or data-based intervention practices for key variables pertinent to potential trends in PBS. Analyses revealed increases across the publication period in studies that (a) included parti

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Bao, Yuntao, Liu Zhengyu та Tabor Clay. "Available data and code for the "Tropical mountain ice core 𝜹18O: A Goldilocks indicator for global temperature change" (Liu et al., 2023)". Science Advance, 21 липня 2023. https://doi.org/10.5281/zenodo.8171476.

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These are the shared data and code for the journal publication of the "Tropical mountain ice core 𝜹18O: A Goldilocks indicator for global temperature change" published by Science Advance.The paper can be found at   https://www.science.org/doi/full/10.1126/sciadv.adi6725.The available code includes Python code for Fig. 2&3 (named "Fig*-code.py")  in the main text of the "Tropical mountain ice core 𝜹18O: A Goldilocks indicator for global temperature change".The available data includes original data for Fig.1-Fig.5 (named "Data_Fig*") and post-processed data for

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Toms, Benjamin. "Data for GMD 2020-152." July 31, 2020. https://doi.org/10.5281/zenodo.3968896.

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This dataset and code is provided as required for publication within the journal Geoscientific Model Development (GMD). The data provided and code are used to train an example neural network and generate layerwise relevance propagation (LRP) heatmaps and an optimized input using the backward optimization technique. The user must modify the path to the data files within the .py script according to where they download the .nc files on their local machine. For additional comments and/or assistance, email ben.toms@colostate.edu.

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Sierra, Carlos, Veronika Ceballos-Núñez, Henrik Hartmann, David Herrera-Ramírez, and Holger Metzler. "Allocation of carbon from Net Primary Production in models is inconsistent with observations of the age of respired carbon." May 14, 2022. https://doi.org/10.5281/zenodo.6548611.

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This is an archive of all the code, data, and manuscript files related to the publication of the same name. The manuscript has been submitted to the journal Biogeosciences and it awaits acceptance for publication.  

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Jones, Erin A., Brandon McClung, Hadi Fawad, and Amy McGovern. "The Observed Availability of Data and Code in Earth Science and Artificial Intelligence." Bulletin of the American Meteorological Society, May 7, 2025. https://doi.org/10.1175/bams-d-24-0147.1.

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Abstract As the use of artificial intelligence (AI) has grown exponentially across a wide variety of science applications, it has become clear that it is critical to share data and code to facilitate reproducibility and innovation. AMS recently adopted the requirement that all papers include an availability statement. However, there is no requirement to ensure that the data and code are actually freely accessible during and after publication. Studies show that without this requirement, data is openly available in about a third to a half of journal articles. In this work, we surveyed two AMS jo

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"Editorial: The publication of geoscientific model developments v1.1." Geoscientific Model Development 8, no. 10 (2015): 3487–95. http://dx.doi.org/10.5194/gmd-8-3487-2015.

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Abstract. Version 1.0 of the editorial of the EGU (European Geosciences Union) journal, Geoscientific Model Development (GMD), was published in 2013. In that editorial an assessment was made of the progress the journal had made since it started, and some revisions to the editorial policy were introduced. After 2 years of experience with this revised editorial policy there are a few required updates, refinements and clarifications, so here we present version 1.1 of the editorial. The most significant amendments relate to the peer-review criteria as presented in the Framework for GMD manuscript

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Song, Eunhye, Henry Lam, and Russell R. Barton. "Code and Data Repository for A Shrinkage Approach to Improve Direct Bootstrap Resampling Under Input Uncertainty." INFORMS Journal on Computing, February 2, 2024. http://dx.doi.org/10.1287/ijoc.2022.0044.cd.

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The goal of this software is to demonstrate the shrinkage bootstrap methods for input uncertainty quantification proposed in "A Shrinkage Approach to Improve Direct Bootstrap Resampling under Input Uncertainty" by Eunhye Song, Henry Lam, and Russell Barton accepted for publication at INFORMS Journal on Computing.

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"Editorial: The publication of geoscientific model developments v1.2." Geoscientific Model Development 12, no. 6 (2019): 2215–25. http://dx.doi.org/10.5194/gmd-12-2215-2019.

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Abstract. Version 1.1 of the editorial of Geoscientific Model Development (GMD), published in 2015 (GMD Executive Editors, 2015), introduced clarifications to the policy on publication of source code and input data for papers published in the journal. Three years of working with this policy has revealed that it is necessary to be more precise in the requirements of the policy and in the narrowness of its exceptions. Furthermore, the previous policy was not specific in the requirements for suitable archival locations. Best practice in code and data archiving continues to develop and is far from

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Mallory, Barnes, Yoder Landon, and Khodaee Mahsa. "Data and Code For: "Detecting Winter Cover Crops and Crop Residues in the Midwest US Using Machine Learning Classification of Thermal and Optical Imagery"." May 18, 2021. https://doi.org/10.5281/zenodo.4771116.

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Representative data and code for the 2021 publication: "Detecting Winter Cover Crops and Crop Residues in the Midwest US Using Machine Learning Classification of Thermal and Optical Imagery" in the journal Remote Sensing. Spatial data are for tile 16SDH only due to space requirements. 

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Ng, Jeremy Y. "Insight into the characteristics of research published in traditional, complementary, alternative, and integrative medicine journals: a bibliometric analysis." BMC Complementary Medicine and Therapies 21, no. 1 (2021). http://dx.doi.org/10.1186/s12906-021-03354-7.

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Abstract Background Traditional, complementary, alternative and integrative medicine (TCAIM) can be described as diverse medical and healthcare interventions, practices, products, or disciplines that are not considered as part of conventional medicine. Inherent in its definition, TCAIMs are comprised of a wide variety of therapies with highly variable safety and effectiveness evidence profiles. Despite this, the use of many TCAIMs is highly prevalent among patients globally. The present study consists of a bibliometric analysis of TCAIM journals. Methods A single search of all International St

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