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Journal articles on the topic 'Kallistó'

Author: Grafiati

Published: 4 June 2021

Last updated: 25 April 2022

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1

Colombo, Anthony R., Timothy J. Triche Jr, and Giridharan Ramsingh. "Arkas: Rapid reproducible RNAseq analysis." F1000Research 6 (June 21, 2017): 586. http://dx.doi.org/10.12688/f1000research.11355.2.

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The recently introduced Kallisto pseudoaligner has radically simplified the quantification of transcripts in RNA-sequencing experiments. We offer cloud-scale RNAseq pipelines Arkas-Quantification, and Arkas-Analysis available within Illumina’s BaseSpace cloud application platform which expedites Kallisto preparatory routines, reliably calculates differential expression, and performs gene-set enrichment of REACTOME pathways. Due to inherit inefficiencies of scale, Illumina's BaseSpace computing platform offers a massively parallel distributive environment improving data management services and

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2

Colombo, Anthony R., Timothy J. Triche Jr, and Giridharan Ramsingh. "Arkas: Rapid reproducible RNAseq analysis." F1000Research 6 (April 27, 2017): 586. http://dx.doi.org/10.12688/f1000research.11355.1.

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The recently introduced Kallisto pseudoaligner has radically simplified the quantification of transcripts in RNA-sequencing experiments. We offer cloud-scale RNAseq pipelines Arkas-Quantification, which deploys Kallisto for parallel cloud computations, and Arkas-Analysis, which annotates the Kallisto results by extracting structured information directly from source FASTA files with per-contig metadata and calculates the differential expression and gene-set enrichment analysis on both coding genes and transcripts. The biologically informative downstream gene-set analysis maintains special focus

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3

Kuo, Tony C. Y., Masaomi Hatakeyama, Toshiaki Tameshige, Kentaro K. Shimizu, and Jun Sese. "Homeolog expression quantification methods for allopolyploids." Briefings in Bioinformatics 21, no. 2 (2018): 395–407. http://dx.doi.org/10.1093/bib/bby121.

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Abstract Genome duplication with hybridization, or allopolyploidization, occurs in animals, fungi and plants, and is especially common in crop plants. There is an increasing interest in the study of allopolyploids because of advances in polyploid genome assembly; however, the high level of sequence similarity in duplicated gene copies (homeologs) poses many challenges. Here we compared standard RNA-seq expression quantification approaches used currently for diploid species against subgenome-classification approaches which maps reads to each subgenome separately. We examined mapping error using

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4

Spohn, Tilman, Frank Sohl, and Hauke Husmann. "Leben auf Io, Europa, Ganymed und Kallisto?" Forschung 30, no. 2 (2005): 8–11. http://dx.doi.org/10.1002/fors.200590023.

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5

Ala-Kyyny, Juuso. "Pääkirjoitus: Tiedon hinta 2.0." Signum 53, no. 1 (2021): 3. http://dx.doi.org/10.25033/sig.107801.

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Miksi pääsy tieteellisiin tutkimusjulkaisuihin on niin kallista? Tätä kysyy Bo-Christer Björk tuoreessa artikkelissaan, joka löytyy ajan hengen mukaisesti final draft -versiona DHanken-julkaisuarkistosta.

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6

Du, Yuheng, Qianhui Huang, Cedric Arisdakessian, and Lana X. Garmire. "Evaluation of STAR and Kallisto on Single Cell RNA-Seq Data Alignment." G3: Genes|Genomes|Genetics 10, no. 5 (2020): 1775–83. http://dx.doi.org/10.1534/g3.120.401160.

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Alignment of scRNA-Seq data are the first and one of the most critical steps of the scRNA-Seq analysis workflow, and thus the choice of proper aligners is of paramount importance. Recently, STAR an alignment method and Kallisto a pseudoalignment method have both gained a vast amount of popularity in the single cell sequencing field. However, an unbiased third-party comparison of these two methods in scRNA-Seq is lacking. Here we conduct a systematic comparison of them on a variety of Drop-seq, Fluidigm and 10x genomics data, from the aspects of gene abundance, alignment accuracy, as well as co

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7

Pakaya, Dwight Usman Motota. "PROGRESIVITAS PENGHAPUSAN PIDANA DENDA STUDI KASUS ATAS PUTUSAN MAHKAMAH AGUNG NOMOR 1554 K/PID.SUS/2015." Media Keadilan: Jurnal Ilmu Hukum 12, no. 1 (2021): 26. http://dx.doi.org/10.31764/jmk.v12i1.4236.

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ABSTRACTCase No. 131/Pid.B/2013/PN.MBO. Junto case No. 201/PID/2014/PT. BNA. Junto case No. 1554 K/Pid.Sus/2015 relating to cases of sustainable forest burning. PT Kallista Alam in case No. 131/Pid.B/2013/PN.MBO. found guilty of committing an environmental crime which was carried out continuously and a fine of Rp. 3,000,000,000, - (three billion rupiah). Meanwhile, at the court of appeal in case No. 201/PID/2014/PT. BNA., The Panel of Judges upheld the District Court's decision on PT Kallista Alam. Meanwhile, the decision of the Supreme Court in case No. 1554 K/Pid.Sus/2015, the Panel of Supre

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8

Heikkilä, Anna-Maija, Jouni Nousiainen, and Satu Pyörälä. "Kallis utaretulehdus." Suomen Maataloustieteellisen Seuran Tiedote, no. 26 (January 31, 2010): 1–4. http://dx.doi.org/10.33354/smst.75787.

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Utaretulehdus on Suomessa yleisin lypsylehmien poiston syy; kaikista poistoista tehdään utaretulehduksen vuoksi runsas viidennes. Utaresairauksista kertyy myös eniten hoitomerkintöjä, niin ikään noin viidennes kaikista hoidoista. Lypsylehmien yksittäisistä sairauksista äkillinen utaretulehdus on yleisin. Utaretulehdus aiheuttaa maidontuottajalle taloudellisia menetyksiä hoitokustannusten, tuotosmenetysten, lisätyön ja ennenaikaisten poistojen kautta. Tämän tutkimuksen tavoitteena oli määrittää arvot näille menetyksille sekä ratkaista, milloin sairastunut lehmä kannattaa hoitaa ja milloin vasta

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9

Giansanti, Valentina, Ming Tang, and Davide Cittaro. "Fast analysis of scATAC-seq data using a predefined set of genomic regions." F1000Research 9 (March 20, 2020): 199. http://dx.doi.org/10.12688/f1000research.22731.1.

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Background: Analysis of scATAC-seq data has been recently scaled to thousands of cells. While processing of other types of single cell data was boosted by the implementation of alignment-free techniques, pipelines available to process scATAC-seq data still require large computational resources. We propose here an approach based on pseudoalignment, which reduces the execution times and hardware needs at little cost for precision. Methods: Public data for 10k PBMC were downloaded from 10x Genomics web site. Reads were aligned to various references derived from DNase I Hypersensitive Sites (DHS)

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10

Giansanti, Valentina, Ming Tang, and Davide Cittaro. "Fast analysis of scATAC-seq data using a predefined set of genomic regions." F1000Research 9 (May 28, 2020): 199. http://dx.doi.org/10.12688/f1000research.22731.2.

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Background: Analysis of scATAC-seq data has been recently scaled to thousands of cells. While processing of other types of single cell data was boosted by the implementation of alignment-free techniques, pipelines available to process scATAC-seq data still require large computational resources. We propose here an approach based on pseudoalignment, which reduces the execution times and hardware needs at little cost for precision. Methods: Public data for 10k PBMC were downloaded from 10x Genomics web site. Reads were aligned to various references derived from DNase I Hypersensitive Sites (DHS)

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11

Rodionov, Oleg. "Codex Vatopedinus gr. 610 and Its Place in the Manuscript Tradition of Kallistos Angelikoudes’ Works." ISTORIYA 12, no. 5 (103) (2021): 0. http://dx.doi.org/10.18254/s207987840015968-3.

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The article deals with one of the oldest manuscripts containing a significant part of the theological chapters of Kallistos Angelikoudes, one of the most important hesychast authors of the late Byzantine period. Codex Vatopedinus gr. 610 was written in the late 14th c. It contains a great amount of quotations excerpted from Patristic literature. In the second part of the codex, one can find the chapters of Kallistos Angelikoudes; these 92 chapters were retrieved from a greater collection containing now about 200 chapters. The article discusses the content of the Vatopedi manuscript, pointing o

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12

Paulson, Susan. "Giorgos Kallis, Degrowth." Environmental Values 29, no. 2 (2020): 244–46. http://dx.doi.org/10.3197/096327120x15752810323995.

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13

Mäki-Kulmala, Heikki. "Tervetuloa taas, Yrjö Kallinen." Aikuiskasvatus 31, no. 3 (2011): 222–24. http://dx.doi.org/10.33336/aik.93946.

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14

Russell, Norman. "Metropolitan Kallistos of Diokleia as dogmatic theologian." International Journal for the Study of the Christian Church 19, no. 4 (2019): 230–39. http://dx.doi.org/10.1080/1474225x.2019.1675227.

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15

Paidas, Constantine. "Secular life's behaviours and debauchery among nuns: An unedited homily by the patriarch of Constantinople Kallistos I." Zbornik radova Vizantoloskog instituta, no. 52 (2015): 343–57. http://dx.doi.org/10.2298/zrvi1552343p.

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In the present study, the homily 'O????? ???? ??????????? ??? ?? p???? ??? ????? ??????, ??, ?????????? ??????????? by the patriarch of Constantinople Kallistos I, given by two mss. codices of Mt. Athos, the codex 8 of Hilandar monastery (ff. 324r-329r) and the codex 1074 of Panteleemon monastery (ff. 206v-210v), is edited for the first time. In the edited homily patriarch Kallistos addresses to the nuns of a particular monastery (probably in Constantinople). The content of the homily makes it clear that the patriarch had received specific accusations, according to which these nuns had given u

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16

ΚΙΑΠΙΔΟΥ, Ειρήνη-Σοφία. "Βιβλιοκρισία:Ecclesiastical History and Nikephoros Kallistou Xanthopoulos, Proceedings of the International Symposium, Vienna, 15th-16th December 2011, ed. Chr. GASTGEBER and S. PANTEGHINI [Veröffentlichungen zur Byzanzforschung, 37], Wien 2015, 184 σελ." Byzantina Symmeikta 27 (24 грудня 2017): 445. http://dx.doi.org/10.12681/byzsym.14152.

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Βιβλιοκρισία:Ecclesiastical History and Nikephoros Kallistou Xanthopoulos, Proceedings of the International Symposium, Vienna, 15th-16th December 2011, ed. Chr. GASTGEBER and S. PANTEGHINI [Veröffentlichungen zur Byzanzforschung, 37], Wien 2015, 184 σελ.

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17

Jost, Madeleine. "Deux mythes de métamorphose en animal et leurs interprétations : Lykaon et Kallisto." Kernos, no. 18 (January 1, 2005): 347–70. http://dx.doi.org/10.4000/kernos.1909.

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18

Rodionov, Oleg. "The Corpus of Kallistos Angelikoudes’ Writings: a Reconsideration." Istoriya 10, no. 3 (77) (2019): 0. http://dx.doi.org/10.18254/s207987840004679-5.

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19

Wahyuni, Sri, Arum Nur Rahmawati, Cheryl Permata Kumala Dewi, Widya Chrisna Manika, and Sapto Hermawan. "Konsistensi Putusan Hakim Terhadap Perkara Kerugian Lingkungan Hidup di Indonesia." ADLIYA: Jurnal Hukum dan Kemanusiaan 15, no. 2 (2021): 81–102. http://dx.doi.org/10.15575/adliya.v15i2.12909.

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To ensure environmental sustainability, environmental management must be supported by the enforcement of environmental law through litigation process, whether on criminal, civil, or administrative aspects. (In Indonesia, there are numerous cases of environmental losses, as well as examples of environmental damage that have been attempted on the court of mandalawangi, natural kallista and sungailiat cases.) The purpose of this research is to find out the extent of court decisions’s consistencies on environmental cases Using normative legal research method, this research examined three court dec

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20

Almeida, Márcio Lino de. "Em defesa do decrescimento." Revista de Estudos AntiUtilitaristas e PosColoniais 11, no. 1 (2021): 212. http://dx.doi.org/10.51359/2179-7501.2021.248616.

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21

Melsted, Páll, Vasilis Ntranos, and Lior Pachter. "The barcode, UMI, set format and BUStools." Bioinformatics 35, no. 21 (2019): 4472–73. http://dx.doi.org/10.1093/bioinformatics/btz279.

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Abstract Summary We introduce the Barcode-UMI-Set format (BUS) for representing pseudoalignments of reads from single-cell RNA-seq experiments. The format can be used with all single-cell RNA-seq technologies, and we show that BUS files can be efficiently generated. BUStools is a suite of tools for working with BUS files and facilitates rapid quantification and analysis of single-cell RNA-seq data. The BUS format therefore makes possible the development of modular, technology-specific and robust workflows for single-cell RNA-seq analysis. Availability and implementation http://BUStools.github.

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22

Hartt, Maxwell. "A review of Degrowth. By Giorgos Kallis." Economic Geography 95, no. 2 (2018): 202–3. http://dx.doi.org/10.1080/00130095.2018.1537714.

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23

Paulson, Susan Ann. "Manual de ferramentas para construir a resiliência e sustentabilidade sem crescimento." Sustentabilidade em Debate 7, no. 2 (2016): 289–91. http://dx.doi.org/10.18472/sustdeb.v7n2.2016.19698.

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24

Caldeweyher, Eike. "kallisto: A command-line interface to simplify computational modelling and the generation of atomic features." Journal of Open Source Software 6, no. 60 (2021): 3050. http://dx.doi.org/10.21105/joss.03050.

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25

Ware, Kallistos, MG Michael, and Katina Michael. "Religion, Science, and Technology: An Interview with Metropolitan Kallistos Ware [Interview]." IEEE Technology and Society Magazine 36, no. 1 (2017): 20–26. http://dx.doi.org/10.1109/mts.2017.2654283.

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26

Moschos, Dimitrios. "Metropolitan Kallistos of Diokleia as historian of the Eastern Orthodox Church." International Journal for the Study of the Christian Church 19, no. 4 (2019): 240–47. http://dx.doi.org/10.1080/1474225x.2019.1675123.

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27

Almeida, Márcio Lino de. "Os caminhos do decrescimento: entrevista com Giorgos Kallis." Revista de Estudos AntiUtilitaristas e PosColoniais 11, no. 1 (2021): 199. http://dx.doi.org/10.51359/2179-7501.2021.250868.

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Giorgos Kallis é um economista ecológico e ecologista político que trabalha com justiça ambiental e limites para o crescimento. Bacharel em química e mestre em Engenharia Ambiental pelo Imperial College, Doutorado em Política Ambiental - University of the Eegean e um segundo mestrado em Economia pela Barcelona Graduate School of Economics. Atualmente é Professor do ICREA (Institución Catalana de Investigación y Estudios Avanzados) e Professor da Universitat Autònoma de Barcelona (UAB) em Ciências Sociais e Comportamentais.

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28

Ivanov, Sergey. "The Avar-Byzantine wars of the late sixth century as depicted by Nikephoros Kallistos Xanthopoulos: A new source?" Zbornik radova Vizantoloskog instituta, no. 50-1 (2013): 123–48. http://dx.doi.org/10.2298/zrvi1350123i.

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At least three fragments places in Nikephoros Kallistos Xanthopoulos? narrative of the Avar wars have no parallels either in Theophylakt Simokatta or in Theophanes. The nature of the evidence cited in these passages cannot be a logical reconstruction based on the texts of either of the mentioned authors. This means that Xanthopoulos, the Church historian of the 14th century, had at his disposal a source on the 6th century which has not come down to us.

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29

Enciu, Mădălin. "Book Reviews: Metropolitan Kallistos Ware, Orthodox Theology in the Twenty-first Century." Review of Ecumenical Studies Sibiu 6, no. 1 (2014): 157–59. http://dx.doi.org/10.2478/ress-2014-0112.

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30

Kolenda, Pauline. ": Jareena: Portrait of a Hijda . Prem Kalliat. ; Eunuchs - India's Third Gender ." American Anthropologist 95, no. 2 (1993): 517–18. http://dx.doi.org/10.1525/aa.1993.95.2.02a00830.

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31

Carnando, Gea, and Nurlaily Nurlaily. "Implementing Communicative Language Teaching (CTL) Approach in an International Standard School in Batam." Journal of English Literacy Education: The Teaching and Learning of English as a Foreign Language 7, no. 2 (2020): 55–63. http://dx.doi.org/10.36706/jele.v7i2.12559.

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Many teaching approaches have been developed all the time to meet the learners' needs and to achieve the objective of learning successfully. One of the most popular and effective approaches that has been developed is Communicative Language Teaching (CLT). Many researchers have found implementing CLT is challenging since it needs certain criteria of learners to engage with the whole process. This research investigated whether the CLT approach fits perfectly in one of International schools in Batam, namely SMA Kallista. There were 19 participants in this research. The researchers used two cycles

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32

Schwartzman, David, and Salvatore Engel-Di Mauro. "A Response to Giorgios Kallis’ Notions of Socialism and Growth." Capitalism Nature Socialism 30, no. 3 (2019): 40–51. http://dx.doi.org/10.1080/10455752.2019.1638612.

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33

Gsottbauer, Elisabeth, Ivana Logar, and Jeroen van den Bergh. "Rejoinder to Kallis et al.'s response to our criticism." Ecological Economics 118 (October 2015): 285–86. http://dx.doi.org/10.1016/j.ecolecon.2015.07.030.

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34

Pan, Lu, Huy Q. Dinh, Yudi Pawitan, and Trung Nghia Vu. "Isoform-level quantification for single-cell RNA sequencing." Bioinformatics 38, no. 5 (2021): 1287–94. http://dx.doi.org/10.1093/bioinformatics/btab807.

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Abstract Motivation RNA expression at isoform level is biologically more informative than at gene level and can potentially reveal cellular subsets and corresponding biomarkers that are not visible at gene level. However, due to the strong 3ʹ bias sequencing protocol, mRNA quantification for high-throughput single-cell RNA sequencing such as Chromium Single Cell 3ʹ 10× Genomics is currently performed at the gene level. Results We have developed an isoform-level quantification method for high-throughput single-cell RNA sequencing by exploiting the concepts of transcription clusters and isoform

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35

Knopp, Anthony K. "The Harness Maker’s Dream: Nathan Kallison and the Rise of South Texas by Nick Kotz." Southwestern Historical Quarterly 118, no. 2 (2014): 234–35. http://dx.doi.org/10.1353/swh.2014.0100.

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36

Hall, Christine. "The witness of Orthodoxy in the West: thanksgiving in honour of Metropolitan Kallistos of Diokleia." International Journal for the Study of the Christian Church 19, no. 4 (2019): 199–201. http://dx.doi.org/10.1080/1474225x.2019.1701819.

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37

Nichols Op, Aidan. "ABBA. THE TRADITION OF ORTHODOXY IN THE WEST. FESTSCHRIFT FOR BISHOP KALLISTOS (WARE) OF DIOKLEIA." New Blackfriars 85, no. 996 (2004): 253–56. http://dx.doi.org/10.1111/j.0028-4289.2004.0bkrev5.x.

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38

Daugrois, Camille, Chloé Bessiere, Sébastien Dejean, et al. "Gene Expression Signature Associated with Clinical Outcome in ALK-Positive Anaplastic Large Cell Lymphoma." Cancers 13, no. 21 (2021): 5523. http://dx.doi.org/10.3390/cancers13215523.

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Anaplastic large cell lymphomas associated with ALK translocation have a good outcome after CHOP treatment; however, the 2-year relapse rate remains at 30%. Microarray gene-expression profiling of 48 samples obtained at diagnosis was used to identify 47 genes that were differentially expressed between patients with early relapse/progression and no relapse. In the relapsing group, the most significant overrepresented genes were related to the regulation of the immune response and T-cell activation while those in the non-relapsing group were involved in the extracellular matrix. Fluidigm technol

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39

Poelmans, Steven AY, Thomas Kalliath, and Paula Brough. "Achieving work–life balance: Current theoretical and practice issues." Journal of Management & Organization 14, no. 3 (2008): 227–38. http://dx.doi.org/10.1017/s1833367200003242.

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AbstractProfessor Steven Poelmans is a leading international expert on the frontiers of work–family research contributing to theoretical and practice advancements. He is the Academic Director of the International Centre of Work and Family (ICWF) at IESE Business School in Barcelona, Spain, which has worked for more than a decade with numerous organisations in Spain, Latin-America, and various countries around the globe to create a family-responsible environment. In this conversation, Steven Poelmans responds to questions from Thomas Kalliath and Paula Brough (Guest Editors) on a range of theor

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40

Biljarski, Ivan. "Zitieto na sv. Grigorij dekapolit v r''kopis ms. sl. 307 ot Rum''nskata Akademija." Zbornik radova Vizantoloskog instituta, no. 50-1 (2013): 235–43. http://dx.doi.org/10.2298/zrvi1350235b.

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The article contains some preliminary observations on a hagiographical text, discovered in a Slavic manuscript from the collection of the Library of Romanian Academy in Bucharest (Ms. sl. 307). The manuscript that was in very poor physical conditions contains a Triodion and Pentecostarion of Nicephorus Kallistos Xantopoulos with full text of the Synodicon of Orthodoxy. After it we find a vita of St Gregory Decapolita. The text is extremely damaged and almost illegible except the title but it is clear that this is not the only known short vita of the holy man. My work hypothesis is that this te

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Poelmans, Steven AY, Thomas Kalliath, and Paula Brough. "Achieving work–life balance: Current theoretical and practice issues." Journal of Management & Organization 14, no. 3 (2008): 227–38. http://dx.doi.org/10.5172/jmo.837.14.3.227.

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AbstractProfessor Steven Poelmans is a leading international expert on the frontiers of work–family research contributing to theoretical and practice advancements. He is the Academic Director of the International Centre of Work and Family (ICWF) at IESE Business School in Barcelona, Spain, which has worked for more than a decade with numerous organisations in Spain, Latin-America, and various countries around the globe to create a family-responsible environment. In this conversation, Steven Poelmans responds to questions from Thomas Kalliath and Paula Brough (Guest Editors) on a range of theor

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42

Warwick, Celsiana. "To kalliston kleos: Cassandra’s Reformulation of Heroic Values in Euripides’ Trojan Women." Classical Philology 117, no. 2 (2022): 343–63. http://dx.doi.org/10.1086/718676.

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43

Liu, Junfeng, Ziyang An, Jianjun Luo, Jing Li, Feifei Li, and Zhihua Zhang. "Episo: quantitative estimation of RNA 5-methylcytosine at isoform level by high-throughput sequencing of RNA treated with bisulfite." Bioinformatics 36, no. 7 (2019): 2033–39. http://dx.doi.org/10.1093/bioinformatics/btz900.

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Abstract Motivation RNA 5-methylcytosine (m5C) is a type of post-transcriptional modification that may be involved in numerous biological processes and tumorigenesis. RNA m5C can be profiled at single-nucleotide resolution by high-throughput sequencing of RNA treated with bisulfite (RNA-BisSeq). However, the exploration of transcriptome-wide profile and potential function of m5C in splicing remains to be elucidated due to lack of isoform level m5C quantification tool. Results We developed a computational package to quantify Epitranscriptomal RNA m5C at the transcript isoform level (named Episo

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44

T. Valsaraj, Kalliat, Preeti M. Jain, Raghava R. Kommalapati, and Jeffery S. Smith. "Reusable adsorbents for dilute solution separation. 1. Adsorption of phenanthrene on surfactant-modified alumina Kalliat." Separation and Purification Technology 13, no. 2 (1998): 137–45. http://dx.doi.org/10.1016/s1383-5866(97)00067-1.

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45

Sconfienza, Umberto Mario. "Limits. Why Malthus Was Wrong and Why Environmentalists Should Care by Giorgos Kallis." Environmental Politics 29, no. 2 (2020): 360–61. http://dx.doi.org/10.1080/09644016.2020.1718875.

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46

Baxa, Paul. "Aristotle Kallis, The Third Rome, 1922–1943: The Making of the Fascist Capital." European History Quarterly 45, no. 3 (2015): 569–71. http://dx.doi.org/10.1177/0265691415587683s.

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47

Marcello, Flavia. "Aristotle Kallis, The Third Rome, 1922–1943: The Making of the Fascist Capital." Journal of Contemporary History 51, no. 4 (2016): 906–8. http://dx.doi.org/10.1177/0022009416661476e.

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48

Duman, Ahmed Hayri. "Giorgos Kallis, Susan Paulson, Giacomo D’Alisa, Federico Demaria (2020), The Case for Degrowth." Protest 1, no. 1 (2021): 211–15. http://dx.doi.org/10.1163/2667372x-bja10010.

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Gattermann, Norbert, Rosa Coll, Lutz Jacobasch, et al. "Effect of deferasirox + erythropoietin vs erythropoietin on erythroid response in Low/Int-1-risk MDS patients: Results of the phase II KALLISTO trial." European Journal of Haematology 101, no. 2 (2018): 208–15. http://dx.doi.org/10.1111/ejh.13096.

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Hesham, Dina, and Shahenda El-Naggar. "Transcriptomic Analysis Revealed an Emerging Role of Alternative Splicing in Embryonal Tumor with Multilayered Rosettes." Genes 11, no. 9 (2020): 1108. http://dx.doi.org/10.3390/genes11091108.

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Abstract:

Embryonal tumor with multilayered rosettes (ETMR) is an aggressive and rare pediatric embryonal brain tumor. Amplification of C19MC microRNA cluster and expression of LIN28 are distinctive features of ETMR. Despite the increasing efforts to decipher ETMR, the biology remains poorly understood. To date, the role of aberrant alternative splicing in ETMR has not been thoroughly investigated. In the current study, a comprehensive analysis was performed on published unprocessed RNA-seq reads of tissue-matched ETMR and fetal controls datasets. Gene expression was quantified in samples using Kallisto

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