Relevant bibliographies by topics / Kimura 2-parameter

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Academic literature on the topic 'Kimura 2-parameter'

Author: Grafiati
Published: 4 June 2025
Last updated: 1 August 2025

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Journal articles on the topic "Kimura 2-parameter"

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Casanellas, Marta, Jesús Fernández-Sánchez, and Jordi Roca-Lacostena. "Embeddability and rate identifiability of Kimura 2-parameter matrices." Journal of Mathematical Biology 80, no. 4 (2019): 995–1019. http://dx.doi.org/10.1007/s00285-019-01446-0.

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FULGIONE, D., D. RIPPA, A. DE LUCA, and M. MILONE. "Molecular characterization of 18S rDNA partial sequence in Microcosmus (Stolidobranchiata, Pyuridae)." Mediterranean Marine Science 7, no. 2 (2006): 5. http://dx.doi.org/10.12681/mms.165.

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We present a 18S rDNA based molecular phylogeny of two species of the genus Microcosmus (M. sulcatus and M. claudicans) sampled in the Mediterranean, to investigate their phylogenetic position relative to species of the order Stolidobranchiata. The analysis is based on partial sequences (739 bp) of the 18S rDNA. Among the 18 variable sites found between the two species, 4 correspond to transitions (ts), 14 to transversions (tv) and 4 to deletions/insertions. In the considered Stolidobranchiata, we found 4.3% overall mean number of nucleotide differences and 0.06 (S.E. ±0.01) Kimura 2-parameter
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HUANG, DONG-DONG, CHEN-YANG SHEN, GUI-YING HUANG, et al. "A new species of Isonychia Eaton, 1871 (Ephemeroptera: Isonychiidae) from Taishun, China based on morphological characteristics and COX1 gene." Zootaxa 5437, no. 4 (2024): 537–48. http://dx.doi.org/10.11646/zootaxa.5437.4.6.

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Isonychia taishunensis Huang, Shen, Zhang & Cheng sp. nov. is described based on larval samples from Taishun County, Zhejiang Province, China. The new species is distinguished from other species of Isonychia Eaton by the following characters: gill plates with spines apically, the color of abdominal tergum X, color pattern of abdominal terga I–IX, and color pattern of each gill plate. The genetic distance between the new species and other species of Isonychia is over 10% using the Kimura 2-parameter model. The phylogenetic relationship of I. taishunensis is close to the clade of I. japonica
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Syafi’i, Ahmad Maulana. "KONSTRUKSI POHON FILOGENETIK VIRUS DENGUE DI INDONESIA MENGGUNAKAN METODE MAXIMUM PARSIMONY." PROSIDING SEMINAR NASIONAL PENDIDIKAN MATEMATIKA (SENPIKA) 1 (December 20, 2023): 228–37. http://dx.doi.org/10.20527/yr1kg815.

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Pada paper ini dijelaskan pembentukan pohon filogenetik virus dengue tipe-3 di Indonesia. Pembentukan pohon filogenetik menggunakan Maximum Parsimony dengan mencari pohon yang jumlahnya paling minimum dari perubahan antar virus. Tujuan dari paper ini adalah mengetahui bagaimana evolusi virus dengue tipe-3 di Indonesia dari tahun ke tahun. Pada paper ini diberikan jarak antar genetik menggunakan metode Kimura 2 Parameter dan pohon filogenetik menggunakan maksimum parsimony. Hasil yang didapatkan ialah terlihat bahwa pohon filogenetik yang terbentuk menggunakan maksimum parsimony memperkuat anal
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5

Srivathsan, Amrita, and Rudolf Meier. "On the inappropriate use of Kimura-2-parameter (K2P) divergences in the DNA-barcoding literature." Cladistics 28, no. 2 (2011): 190–94. http://dx.doi.org/10.1111/j.1096-0031.2011.00370.x.

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Han, Bangxing, Huasheng Peng, Qin Yao, Yang Zhou, Ming’en Cheng, and Dequn Wang. "Analysis of Genetic Relationships in Germplasms of Mugua in China Revealed by Internal Transcribed Spacer and its Taxonomic Significance Analysis of Genetic Relationships in Germplasms of Mugua in China Revealed by Internal Transcribed Spacer and its Taxonomic Signifi cance." Zeitschrift für Naturforschung C 65, no. 7-8 (2010): 495–500. http://dx.doi.org/10.1515/znc-2010-7-813.

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Genetic relationships were studied among eight species of three taxa in the genus Chaenomeles by nuclear ribosomal internal transcribed spacer (ITS) analysis. A genetic distance matrix based on ITS sequences was estimated according to the formula of Kimura-2 parameter and a neighbour-joining phenogram, which were obtained with Clustalx4.1 software. The results showed that the germplasms of Mugua originate from Ch. speciosa (Sweet) Nakai, not including Ch. sinensis (Thouin) Kochne and Ch. cathayensis (Hemsl.) Schneid. The results also showed that ‘Yao Mugua’ and ‘Ornamental Mugua’ are the most
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WANG, YAQIN, KA HOU CHU, and KA YAN MA. "Description of a new species of freshwater shrimp (Decapoda: Caridea: Atyidae) from Mount Danxia, Guangdong, China, based on morphological and molecular evidence." Zootaxa 5476, no. 1 (2024): 447–62. http://dx.doi.org/10.11646/zootaxa.5476.1.33.

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A new atyid species, Caridina danxiaensis sp. nov., is discovered from Danxia Mountain National Nature Reserve in Guangdong Province. Morphological investigations show obvious differences from any known Caridina species. It can be easily distinguished from its congeners based on distinct characteristics of the rostrum, stylocerite, and uropodal diaeresis. Genetic analysis of Caridina based on 16S rRNA gene sequences also supports the distinctiveness of the new species from all other morphologically similar species. The sequence divergence (Kimura 2-parameter model) based on this gene between t
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8

Kaltenbach, Thomas, Jhoana Garces, and Jean-Luc Gattolliat. "First contribution to Labiobaetis Novikova & Kluge in Cambodia (Ephemeroptera, Baetidae), with description of two new species." ZooKeys 1123 (October 4, 2022): 63–81. http://dx.doi.org/10.3897/zookeys.1123.90308.

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Material collected in 2018 in Cambodia gives us first insights into the diversity of Labiobaetis Novikova & Kluge, 1987 in this country. No species has been reported so far. We identified two new species using a combination of morphology and genetic distance (COI, Kimura 2-parameter). They are described and illustrated based on their larvae. A key to all Labiobaetis species of continental Southeast Asia is provided. The interspecific K2P distance between the two new species is 20–21%, the intraspecific distance of one of them is 1%. The total number of Labiobaetis species worldwide is augm
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Men, Qiu-Lei, Chen W. Young, Pavel Starkevich, Yong-Fu Yu, and Xiao-Ping Lei. "Two new species of Tipula (Vestiplex) from Southern China based on morphological and molecular data, with redescription of Tipula (Vestiplex) bicalcarata (Diptera, Tipulidae, Tipulinae)." ZooKeys 658 (February 23, 2017): 63–80. https://doi.org/10.3897/zookeys.658.9738.

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Two new species of subgenus Tipula (Vestiplex) Bezzi, 1924, T. (V.) leigongshanensis Men & Young, sp. n. and T. (V.) maoershanensis Men & Young, sp. n. are described and illustrated. Tipula (Vestiplex) bicalcarata Savchenko, 1965 is redescribed and illustrated based on additional morphological characters. Partial mitochondrial cytochrome oxidase subunit I (COI) sequences of these three species are provided. Pairwise genetic distances among two new species and related species, T. (V.) bicalcarata, T. (V.) coxitalis Alexander, 1935, and T. (V.) sternotuberculata Alexander, 1935 range fro
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10

Kaltenbach, Thomas, Jhoana Garces, and Jean-Luc Gattolliat. "First contribution to Labiobaetis Novikova & Kluge in Cambodia (Ephemeroptera, Baetidae), with description of two new species." ZooKeys 1123 (October 4, 2022): 63–81. https://doi.org/10.3897/zookeys.1123.90308.

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Abstract:
Material collected in 2018 in Cambodia gives us first insights into the diversity of Labiobaetis Novikova & Kluge, 1987 in this country. No species has been reported so far. We identified two new species using a combination of morphology and genetic distance (COI, Kimura 2-parameter). They are described and illustrated based on their larvae. A key to all Labiobaetis species of continental Southeast Asia is provided. The interspecific K2P distance between the two new species is 20–21%, the intraspecific distance of one of them is 1%. The total number of Labiobaetis species worldwide is augm
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Book chapters on the topic "Kimura 2-parameter"

1

Rindy Panca Tanhindarto, Ashri Mukti Benita, Indra Mustika Pratama, Deudeu Lasmawati, and Henni Widyastuti. "Studi Awal Pengawetan Gudeg dengan Iradiasi Gamma Dosis Sedang Kombinasi Variasi Pengemas." In Prosiding Seminar Nasional Aplikasi Isotop dan Radiasi 2021: Peran Isotop dan Radiasi untuk Indonesia yang Berdaya Saing. Penerbit BRIN, 2023. http://dx.doi.org/10.55981/brin.690.c651.

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Telah dilakukan penelitian terhadap pengaruh iradiasi gamma terhadap pangan olahan tradisional gudeg dengan dosis 8 kGy pada laju dosis 3,17 kGy/jam. Sampel dikemas dengan kemasan laminasi sesuai prosedur cara iradiasi yang baik sesuai SNI dosis sedang. Iradiasi dan kondisi penyimpanan sampel dilakukan pada suhu kamar. Penelitian ini bertujuan untuk melihat pengaruh iradiasi gamma dosis sedang terhadap umur simpan makanan olahan tradisional gudeg sebagai alternatif teknik pengawetan yang sudah ada. Penelitian ini dilakukan dalam 4 tahap, yaitu 1) penentuan Dose Uniformity Ratio (DUR); 2) perba
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