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Journal articles on the topic 'Locus; Puffer fish Fugu rubripes'

Author: Grafiati

Published: 4 June 2021

Last updated: 13 February 2022

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1

Chou, Chih-Fong, Sumanty Tohari, Sydney Brenner, and Byrappa Venkatesh. "Erythropoietin gene from a teleost fish, Fugu rubripes." Blood 104, no. 5 (2004): 1498–503. http://dx.doi.org/10.1182/blood-2003-10-3404.

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Abstract In this paper we report the cloning and characterization of the erythropoietin (Epo) gene from the pufferfish, Fugu rubripes. This is the first nonmammalian Epo gene to be cloned. The Fugu Epo comprises 5 exons and 4 introns similar to the human EPO, and encodes a 185–amino acid protein that is 32% to 34% identical to Epo from various mammals. The synteny of genes at the Epo locus is conserved between the Fugu and humans. Unlike in mammals in which adult kidney is the primary Epo-producing organ, the heart is the main Epo-producing organ in adult Fugu. In addition to the heart, Fugu E

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2

Lang, T. "Bioinformatic identification of polymerizing and transmembrane mucins in the puffer fish Fugu rubripes." Glycobiology 14, no. 6 (2004): 521–27. http://dx.doi.org/10.1093/glycob/cwh066.

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3

Aparicio, S., A. Morrison, A. Gould, et al. "Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes." Proceedings of the National Academy of Sciences 92, no. 5 (1995): 1684–88. http://dx.doi.org/10.1073/pnas.92.5.1684.

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4

Elgar, Greg, Fraser Rattray, John Greystrong, and Sydney Brenner. "Genomic Structure and Nucleotide Sequence of the p55 Gene of the Puffer Fish Fugu rubripes." Genomics 27, no. 3 (1995): 442–46. http://dx.doi.org/10.1006/geno.1995.1075.

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5

Wu, Zhenlong, Liping Xie, Guoliang Xia, et al. "A new tetrodotoxin-producing actinomycete, Nocardiopsis dassonvillei, isolated from the ovaries of puffer fish Fugu rubripes." Toxicon 45, no. 7 (2005): 851–59. http://dx.doi.org/10.1016/j.toxicon.2005.02.005.

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6

Zou, Jun, Melody S. Clark, and Chris J. Secombes. "Characterisation, expression and promoter analysis of an interleukin 10 homologue in the puffer fish, Fugu rubripes." Immunogenetics 55, no. 5 (2003): 325–35. http://dx.doi.org/10.1007/s00251-003-0580-y.

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7

Macrae, Alexander D., and Sydney Brenner. "Analysis of the dopamine receptor family in the compact genome of the puffer fish Fugu rubripes." Genomics 25, no. 2 (1995): 436–46. http://dx.doi.org/10.1016/0888-7543(95)80044-m.

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8

ABNIZOVA, I., K. WALTER, R. TE BOEKHORST, G. ELGAR, and W. R. GILKS. "STATISTICAL INFORMATION CHARACTERIZATION OF CONSERVED NON-CODING ELEMENTS IN VERTEBRATES." Journal of Bioinformatics and Computational Biology 05, no. 02b (2007): 533–47. http://dx.doi.org/10.1142/s0219720007002898.

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Recently, a set of highly conserved non-coding elements (CNEs) has been derived from a comparison between the genomes of the puffer fish, Takifugu or Fugu rubripes, and man. In order to facilitate the identification of these conserved elements in silico, we characterize them by a number of statistical features. We found a pronounced information pattern around CNE borders; although the CNEs themselves are AT rich and have high entropy (complexity), they are flanked by GC-rich regions of low entropy (complexity). We also identified the most abundant motifs within and around of CNEs, and identifi

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9

Cottage, Amanda, Melody Clark, Kelvin Hawker, et al. "Three receptor genes for plasminogen related growth factors in the genome of the puffer fish Fugu rubripes 1." FEBS Letters 443, no. 3 (1999): 370–74. http://dx.doi.org/10.1016/s0014-5793(99)00011-3.

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10

Yamaguchi, Fuminori, and Sydney Brenner. "Molecular cloning of 5-hydroxytryptamine (5-HT) type 1 receptor genes from the Japanese puffer fish, Fugu rubripes." Gene 191, no. 2 (1997): 219–23. http://dx.doi.org/10.1016/s0378-1119(97)00064-4.

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11

Gillemans, Nynke, Tara McMorrow, Rita Tewari, et al. "Functional and comparative analysis of globin loci in pufferfish and humans." Blood 101, no. 7 (2003): 2842–49. http://dx.doi.org/10.1182/blood-2002-09-2850.

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To further our understanding of the regulation of vertebrate globin loci, we have isolated cosmids containing α- and β-globin genes from the pufferfish Fugu rubripes. By DNA fluorescence in situ hybridization (FISH) analysis, we show thatFugu contains 2 distinct hemoglobin loci situated on separate chromosomes. One locus contains only α-globin genes (α-locus), whereas the other also contains a β-globin gene (αβ-locus). This is the first poikilothermic species analyzed in which the physical linkage of the α- and β-globin genes has been uncoupled, supporting a model in which the separation of th

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12

Moncaut, Natalia, Gustavo Somoza, Deborah M. Power, and Adelino V. M. Canário. "Five gonadotrophin-releasing hormone receptors in a teleost fish: isolation, tissue distribution and phylogenetic relationships." Journal of Molecular Endocrinology 34, no. 3 (2005): 767–79. http://dx.doi.org/10.1677/jme.1.01757.

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Gonadotrophin-releasing hormone (GnRH) is the main neurohormone controlling gonadotrophin release in all vertebrates, and in teleost fish also of growth hormone and possibly of other adenohypophyseal hormones. Over 20 GnRHs have been identified in vertebrates and protochoordates and shown to bind cognate G-protein couple receptors (GnRHR). We have searched the puffer fish, Fugu rubripes, genome sequencing database, identified five GnRHR genes and proceeded to isolate the corresponding complementary DNAs in European sea bass, Dicentrachus labrax. Phylogenetic analysis clusters the European sea

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13

Sarwal, M. M., J. M. Sontag, L. Hoang, S. Brenner, and T. M. Wilkie. "G protein alpha subunit multigene family in the Japanese puffer fish Fugu rubripes: PCR from a compact vertebrate genome." Genome Research 6, no. 12 (1996): 1207–15. http://dx.doi.org/10.1101/gr.6.12.1207.

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14

Wu, Zhenlong, Ying Yang, Liping Xie, et al. "Toxicity and distribution of tetrodotoxin-producing bacteria in puffer fish Fugu rubripes collected from the Bohai Sea of China." Toxicon 46, no. 4 (2005): 471–76. http://dx.doi.org/10.1016/j.toxicon.2005.06.002.

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15

YOSHIDA, K. ATSUTOSHI, and M. ASAHIKO AWAJI. "Improvement of polymerase chain reaction condition to detect polymorphic dinucleotide repeat microsatellite DNA marker in the puffer fish Fugu rubripes." Fisheries Science 66, no. 2 (2000): 397–99. http://dx.doi.org/10.1046/j.1444-2906.2000.00061.x.

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16

Davidson, Colin, Robert Hirt, Kalpana Lal, et al. "Molecular evolution of the vertebrate blood coagulation network." Thrombosis and Haemostasis 89, no. 03 (2003): 420–28. http://dx.doi.org/10.1055/s-0037-1613369.

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SummaryIn mammalian blood coagulation 5 proteases, factor VII (FVII), factor IX (FIX), factor X (FX), protein C (PC) and prothrombin act with two cofactors factor V and factor VIII to control the generation of fibrin. Biochemical evidence and molecular cloning data have previously indicated that blood coagulation involving tissue factor, prothrombin and fibrinogen is present in all vertebrates. Using degenerate RT-PCR we have isolated and characterized novel cDNAs with sequence identity to the blood coagulation serine proteases and cofactors from chicken and the puffer fish (Fugu rubripes). Se

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17

Altmann, Stephen M., Mark T. Mellon, Daniel L. Distel, and Carol H. Kim. "Molecular and Functional Analysis of an Interferon Gene from the Zebrafish, Danio rerio." Journal of Virology 77, no. 3 (2003): 1992–2002. http://dx.doi.org/10.1128/jvi.77.3.1992-2002.2003.

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ABSTRACT The interferon (IFN) family consisting of alpha IFN (IFN-α), IFN-β, IFN-ω, IFN-δ, IFN-κ, and IFN-τ is a large group of cytokines involved in the innate immune response against various microorganisms. Genes for IFN have been cloned from a variety of mammalian and avian species; however, IFN genes from lower-order vertebrates have not been forthcoming. Here, we report the cloning and characterization of the IFN gene from the zebrafish, Danio rerio. Zebrafish IFN (zfIFN) is 185 amino acids in length, with the first 22 amino acids representing a putative signal peptide. Treatment with the

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18

Yamaguchi, Fuminori, Kumiko Yamaguchi, Masaaki Tokuda, and Sydney Brenner. "Molecular cloning of EDG-3 and N-Shc genes from the puffer fish, Fugu rubripes , and conservation of synteny with the human genome." FEBS Letters 459, no. 1 (1999): 105–10. http://dx.doi.org/10.1016/s0014-5793(99)01210-7.

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19

How, G. F., B. Venkatesh, and S. Brenner. "Conserved linkage between the puffer fish (Fugu rubripes) and human genes for platelet-derived growth factor receptor and macrophage colony-stimulating factor receptor." Genome Research 6, no. 12 (1996): 1185–91. http://dx.doi.org/10.1101/gr.6.12.1185.

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20

Yoshikawa, Sota, Masaomi Hamasaki, Kazushi Kadomura, et al. "Genetic Dissection of a Precocious Phenotype in Male Tiger Pufferfish (Takifugu rubripes) using Genotyping by Random Amplicon Sequencing, Direct (GRAS-Di)." Marine Biotechnology 23, no. 2 (2021): 177–88. http://dx.doi.org/10.1007/s10126-020-10013-4.

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AbstractThe novel non-targeted PCR-based genotyping system, namely Genotyping by Random Amplicon Sequencing, Direct (GRAS-Di), is characterized by the simplicity in library construction and robustness against DNA degradation and is expected to facilitate advancements in genetics, in both basic and applied sciences. In this study, we tested the utility of GRAS-Di for genetic analysis in a cultured population of the tiger pufferfish Takifugu rubripes. The genetic analyses included family structure analysis, genetic map construction, and quantitative trait locus (QTL) analysis for the male precoc

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21

Shi, Yuguang, Krishna M. Vattem, Ruchira Sood та ін. "Identification and Characterization of Pancreatic Eukaryotic Initiation Factor 2 α-Subunit Kinase, PEK, Involved in Translational Control". Molecular and Cellular Biology 18, № 12 (1998): 7499–509. http://dx.doi.org/10.1128/mcb.18.12.7499.

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ABSTRACT In response to various environmental stresses, eukaryotic cells down-regulate protein synthesis by phosphorylation of the α subunit of eukaryotic translation initiation factor 2 (eIF-2α). In mammals, the phosphorylation was shown to be carried out by eIF-2α kinases PKR and HRI. We report the identification and characterization of a cDNA from rat pancreatic islet cells that encodes a new related kinase, which we term pancreatic eIF-2α kinase, or PEK. In addition to a catalytic domain with sequence and structural features conserved among eIF-2α kinases, PEK contains a distinctive amino-

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22

Pipe, Steven W., Hongzhi Z. Miao, Philip F. Kucab, John H. McVey, and Randal J. Kaufman. "The Secretion Efficiency of Factor VIII Can Be Regulated by the Size and Oligosaccharide Content of the B Domain." Blood 106, no. 11 (2005): 687. http://dx.doi.org/10.1182/blood.v106.11.687.687.

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Abstract Factor VIII (FVIII) shares an identical domain structure (A1-A2-B-A3-C1-C2) with factor V (FV), another coagulation cofactor. FVIII and FV share ~40% amino acid identity within their A and C domains. The B domains of both cofactors are encoded by unusually large single exons and share no amino acid homology to each other or any identified protein, although they have conserved a high content of asparagine (N)-linked oligosaccharides. The B domain of FVIII is dispensable for functional activity and is extensively glycosylated (18 asparagine (N)-linked glycosylation attachment sites). B

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23

Yuan, Yong-jun, Feng Guan, Chen Yu, Zhuo Chen, and Jie Zhang. "Isolation and Toxigenic Characteristics of a Tetrodotoxin Producing Bacteria." Turkish Journal of Fisheries and Aquatic Sciences 22, no. 1 (2021). http://dx.doi.org/10.4194/trjfas19531.

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Tetrodotoxin (TTX) is a kind of neurotoxin with great scientific research and medicinal value. Studies have confirmed that microorganism is one of the important sources of TTX. However, the specific biosynthetic and regulatory pathway of TTX production by microorganisms are still unclear. In this paper, out of twelve symbiotic bacteria screened from the wild puffer fish (Fugu rubripes) collected from coastal sea area of Ningbo (Zhejiang, China), a strain named He-1 isolated from the liver of puffer fish was found can produce TTX. It was identified as Bacillus cereus based on physiological, bio

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