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Journal articles on the topic 'Macos'

Author: Grafiati

Published: 4 June 2021

Last updated: 30 May 2022

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1

Stecher, Glen, Koichiro Tamura, and Sudhir Kumar. "Molecular Evolutionary Genetics Analysis (MEGA) for macOS." Molecular Biology and Evolution 37, no. 4 (January 6, 2020): 1237–39. http://dx.doi.org/10.1093/molbev/msz312.

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Abstract The Molecular Evolutionary Genetics Analysis (MEGA) software enables comparative analysis of molecular sequences in phylogenetics and evolutionary medicine. Here, we introduce the macOS version of the MEGA software. This new version eliminates the need for virtualization and emulation programs previously required to use MEGA on Apple computers. MEGA for macOS utilizes memory and computing resources efficiently for conducting evolutionary analyses on macOS. It has a native Cocoa graphical user interface that is programmed to provide a consistent user experience across macOS, Windows, and Linux. MEGA for macOS is available from www.megasoftware.net free of charge.

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2

Wolcott, Harry F. "The Middlemen of MACOS." Anthropology & Education Quarterly 38, no. 2 (June 2007): 195–206. http://dx.doi.org/10.1525/aeq.2007.38.2.195.

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Manna, Modhuparna, Andrew Case, Aisha Ali-Gombe, and Golden G. Richard. "Modern macOS userland runtime analysis." Forensic Science International: Digital Investigation 38 (September 2021): 301221. http://dx.doi.org/10.1016/j.fsidi.2021.301221.

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Case, Andrew, Ryan D. Maggio, Modhuparna Manna, and Golden G. Richard. "Memory Analysis of macOS Page Queues." Forensic Science International: Digital Investigation 33 (July 2020): 301004. http://dx.doi.org/10.1016/j.fsidi.2020.301004.

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Hwa Song, Jong, Se Ho Kim, Song Yi Hwang, Seung Gyu Kim, and Sung Jin Lee. "A study on the APFS timestamps in MACOS." International Journal of Engineering & Technology 7, no. 3.3 (June 8, 2018): 133. http://dx.doi.org/10.14419/ijet.v7i2.33.13870.

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Background/Objectives: There are not many time analysis studies on High Sierra, the latest macOS (10.13) that has changed the file system from HFS+ toAPFS (Apple File System).Methods/Statistical analysis: In this experiment, we tried various actions of the file and the directory with using the Sierra version of the internal drive and the High Sierra version of the external drive. The ‘mdls’ command and the time attributes of the Finder are used for comparing the metadata.The ‘log show’ command is also used for checking the system time modification. For analyzing the .DS_Store and the db.sqlite files, we used .DS_Store Parser and DB Browser for SQLite.Findings: First of all, we briefly review time synchronization and APFS. And then, we compare the time records of HFS+ with those of APFS with differences. The unified logging file (tracev3) file with using the ‘log show’ command is analyzed and it is confirmed that the relevant log is left when the system time is changed. Next, we performed various actions on the files and directories of Sierra and High Sierra, and compiled the results as the tables. As a result, we found that the accessed time values were not updated well at high Sierra for the performance purpose. Finally, we also found the file attribute values in the DS_Store file in the RecycleBin and the database files in Document Revisions by default, and found that they can be used in forensic analysis.Improvements/Applications: Furthermore, it is necessary to examine and analyze the change of the time attribute of the file when the file and folder are moved or copied with APFS formatted external storage device.

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Alcazar, Jesus, and Juan de M. Munoz. "ChemInform Abstract: Microwave-Assisted Continuous Flow Organic Synthesis (MACOS)." ChemInform 44, no. 32 (July 18, 2013): no. http://dx.doi.org/10.1002/chin.201332267.

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7

Johannsen, Jens. "OSC Deck 2 and 8-Track Tool for MacOS-Compatible Computers." Computer Music Journal 19, no. 3 (1995): 68. http://dx.doi.org/10.2307/3680661.

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Arroyo Ohori, Ken. "azul: A fast and efficient 3D city model viewer for macOS." Transactions in GIS 24, no. 5 (August 2, 2020): 1165–84. http://dx.doi.org/10.1111/tgis.12673.

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Langner, Michael, and Stefan Mulitza. "Technical note: PaleoDataView – a software toolbox for the collection, homogenization and visualization of marine proxy data." Climate of the Past 15, no. 6 (December 19, 2019): 2067–72. http://dx.doi.org/10.5194/cp-15-2067-2019.

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Abstract. We present a software toolbox that allows the efficient collection, management and maintenance of larger paleoceanographic data sets. The program combines a graphical user interface (GUI) with a simple document-based database and functionality for visualization, stratigraphy (visual alignment and radiocarbon calibration), age modelling and efficient ensemble time-series generation to create larger homogenous data compilations. Data can be imported from Excel or text files, are stored locally in netCDF format and can be easily exchanged between collaborating scientists. Within a data collection, data can be imported either to proxy-specific sub-collections or to a multi-proxy (“miscellaneous”) sub-collection that allows the import and management of any downcore data. A single age model is shared among all proxies of a core within a collection. The stand-alone software can be used with Windows and macOS and does not require web access. Installers of the current version for both Windows 10 and macOS including the C++ code can be downloaded from https://www.marum.de/Stefan-Mulitza/PaleoDataView.html (last access: 5 December 2019) along with a detailed user guide.

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Miller, Barton P., Gregory Cooksey, and Fredrick Moore. "An empirical study of the robustness of MacOS applications using random testing." ACM SIGOPS Operating Systems Review 41, no. 1 (January 2007): 78–86. http://dx.doi.org/10.1145/1228291.1228308.

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Youn, Jung-moo, and Jae-cheol Ryu. "How to Detect and Block Ransomware with File Extension Management in MacOS." Journal of the Korea Institute of Information Security and Cryptology 27, no. 2 (April 30, 2017): 251–58. http://dx.doi.org/10.13089/jkiisc.2017.27.2.251.

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Pham, Duy-Phuc, Duc-Ly Vu, and Fabio Massacci. "Mac-A-Mal: macOS malware analysis framework resistant to anti evasion techniques." Journal of Computer Virology and Hacking Techniques 15, no. 4 (June 20, 2019): 249–57. http://dx.doi.org/10.1007/s11416-019-00335-w.

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13

Martin, Jeremy, Douglas Alpuche, Kristina Bodeman, Lamont Brown, Ellis Fenske, Lucas Foppe, Travis Mayberry, Erik Rye, Brandon Sipes, and Sam Teplov. "Handoff All Your Privacy – A Review of Apple’s Bluetooth Low Energy Continuity Protocol." Proceedings on Privacy Enhancing Technologies 2019, no. 4 (October 1, 2019): 34–53. http://dx.doi.org/10.2478/popets-2019-0057.

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Abstract We investigate Apple’s Bluetooth Low Energy (BLE) Continuity protocol, designed to support interoperability and communication between iOS and macOS devices, and show that the price for this seamless experience is leakage of identifying information and behavioral data to passive adversaries. First, we reverse engineer numerous Continuity protocol message types and identify data fields that are transmitted unencrypted. We show that Continuity messages are broadcast over BLE in response to actions such as locking and unlocking a device’s screen, copying and pasting information, making and accepting phone calls, and tapping the screen while it is unlocked. Laboratory experiments reveal a significant flaw in the most recent versions of macOS that defeats BLE Media Access Control (MAC) address randomization entirely by causing the public MAC address to be broadcast. We demonstrate that the format and content of Continuity messages can be used to fingerprint the type and Operating System (OS) version of a device, as well as behaviorally profile users. Finally, we show that predictable sequence numbers in these frames can allow an adversary to track Apple devices across space and time, defeating existing anti-tracking techniques such as MAC address randomization.

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Dras, Michał, Grzegorz Fila, and Małgorzata Plechawska-Wójcik. "Analysis of Xamarin capabilities for building mobile multi-platform applications." Journal of Computer Sciences Institute 7 (September 30, 2018): 183–90. http://dx.doi.org/10.35784/jcsi.675.

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The article presents Xamarin platform which is used to create cross-platform application for Android, iOS, MacOS and Universal Windows Platform. This article shows Xamarin platform and a test application that has been used to investigate platform's capabilities and effectiveness in creating multi-platform applications. Inspections prove that Xamarin allows to create multi-platform applications in a more effective way without losing too much on performance of these applications on individual platforms and systems.

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Faisal, Saqib, Farman Ullah, Pradip K. Maity, Alan Rolfe, Thiwanka B. Samarakoon, Patrick Porubsky, Benjamin Neuenswander, et al. "Facile (Triazolyl)methylation of MACOS-derived Benzofused Sultams Utilizing ROMP-derived OTP Reagents." ACS Combinatorial Science 14, no. 4 (March 5, 2012): 268–72. http://dx.doi.org/10.1021/co2001839.

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Neidle, Carol. "SignStream™." Sign Transcription and Database Storage of Sign Information 4, no. 1-2 (December 31, 2001): 203–14. http://dx.doi.org/10.1075/sll.4.1-2.14nei.

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SignStream™ is a MacOS application that provides a single computing environment within which to view, annotate, analyze, and search through video and/or audio data, making it useful for linguistic research on signed languages and the gestural component of spoken languages. SignStream is distributed on a non-profit basis to educators, students, and researchers, and the features in the current release, version 2.0, are described in this article. Program design and development are ongoing, however, and the developers welcome feedback and suggestions.

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Neidle, Carol. "SignStream™." Sign Transcription and Database Storage of Sign Information 4, no. 1-2 (December 31, 2001): 203–14. http://dx.doi.org/10.1075/sll.4.12.14nei.

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SignStream™ is a MacOS application that provides a single computing environment within which to view, annotate, analyze, and search through video and/or audio data, making it useful for linguistic research on signed languages and the gestural component of spoken languages. SignStream is distributed on a non-profit basis to educators, students, and researchers, and the features in the current release, version 2.0, are described in this article. Program design and development are ongoing, however, and the developers welcome feedback and suggestions.

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Organ, Michael G., Paul R. Hanson, Alan Rolfe, Thiwanka B. Samarakoon, and Farman Ullah. "Accessing Stereochemically Rich Sultams via Microwave-assisted, Continuous-flow Organic Synthesis (MACOS) Scale-out." Journal of Flow Chemistry 1, no. 1 (February 29, 2012): 32–39. http://dx.doi.org/10.1556/jfchem.2011.00008.

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19

Fitchett, Paul G., and William Benedict Russell. "Reflecting on MACOS: why it failed and what we can learn from its demise." Paedagogica Historica 48, no. 3 (June 2012): 469–84. http://dx.doi.org/10.1080/00309230.2011.554423.

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20

Shore, Gjergji, and Michael G Organ. "Gold-Film-Catalysed Hydrosilylation of Alkynes by Microwave-Assisted, Continuous-Flow Organic Synthesis (MACOS)." Chemistry - A European Journal 14, no. 31 (October 29, 2008): 9641–46. http://dx.doi.org/10.1002/chem.200801610.

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Mirdita, Milot, Martin Steinegger, and Johannes Söding. "MMseqs2 desktop and local web server app for fast, interactive sequence searches." Bioinformatics 35, no. 16 (January 7, 2019): 2856–58. http://dx.doi.org/10.1093/bioinformatics/bty1057.

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Abstract Summary The MMseqs2 desktop and web server app facilitates interactive sequence searches through custom protein sequence and profile databases on personal workstations. By eliminating MMseqs2’s runtime overhead, we reduced response times to a few seconds at sensitivities close to BLAST. Availability and implementation The app is easy to install for non-experts. GPLv3-licensed code, pre-built desktop app packages for Windows, MacOS and Linux, Docker images for the web server application and a demo web server are available at https://search.mmseqs.com. Supplementary information Supplementary data are available at Bioinformatics online.

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W. Schruder, Christopher, Michael G. Organ, and William J. Pietro. "Metal Nanoparticle Impregnated Controlled-size Silica Macrospheres as a Microwave-transparent Catalyst System for MACOS." Current Nanoscience 12, no. 4 (May 23, 2016): 448–54. http://dx.doi.org/10.2174/1573413712666160115000726.

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Shore, Gjergji, Sylvie Morin, and Michael G. Organ. "Catalysis in Capillaries by Pd Thin Films Using Microwave-Assisted Continuous-Flow Organic Synthesis (MACOS)." Angewandte Chemie International Edition 45, no. 17 (April 21, 2006): 2761–66. http://dx.doi.org/10.1002/anie.200503600.

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Shore, Gjergji, Sylvie Morin, and Michael G. Organ. "Catalysis in Capillaries by Pd Thin Films Using Microwave-Assisted Continuous-Flow Organic Synthesis (MACOS)." Angewandte Chemie 118, no. 17 (April 21, 2006): 2827–32. http://dx.doi.org/10.1002/ange.200503600.

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25

Laguna, Javier Rodriguez Rodriguez, and Manuel Pancorbo Castro. "Online manual on numerical computation." New Trends and Issues Proceedings on Humanities and Social Sciences 4, no. 5 (November 16, 2017): 17–22. http://dx.doi.org/10.18844/prosoc.v4i5.2668.

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We present a tutorial on numerical computation for undergrads in Sciences, Maths and Engineering, based on Octave, a popular framework for numerical analysis which, in addition, is FOSS (Free & Open Source Software). So it can be freely run on several operating systems: Windows, MacOS, any GNU-Linux flavour, FreeBSD and, even, on Android mobile platform. The tutorial is given as a static web page with almost no extra complexities, such as database engine, dynamic rendering via PHP or similar. All the workflow is arranged through FOSS with full respect to standards. Keywords: FOSS; octave; webpage; tutorial; markup language; markdown

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Dolzhenko, Egor, Viraj Deshpande, Felix Schlesinger, Peter Krusche, Roman Petrovski, Sai Chen, Dorothea Emig-Agius, et al. "ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions." Bioinformatics 35, no. 22 (May 27, 2019): 4754–56. http://dx.doi.org/10.1093/bioinformatics/btz431.

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Abstract Summary We describe a novel computational method for genotyping repeats using sequence graphs. This method addresses the long-standing need to accurately genotype medically important loci containing repeats adjacent to other variants or imperfect DNA repeats such as polyalanine repeats. Here we introduce a new version of our repeat genotyping software, ExpansionHunter, that uses this method to perform targeted genotyping of a broad class of such loci. Availability and implementation ExpansionHunter is implemented in C++ and is available under the Apache License Version 2.0. The source code, documentation, and Linux/macOS binaries are available at https://github.com/Illumina/ExpansionHunter/. Supplementary information Supplementary data are available at Bioinformatics online.

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El Houdaigui, Bilal, and Sam Meyer. "TwisTranscripT: stochastic simulation of the transcription-supercoiling coupling." Bioinformatics 36, no. 12 (March 31, 2020): 3899–901. http://dx.doi.org/10.1093/bioinformatics/btaa221.

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Abstract Summary Transcription and DNA supercoiling are involved in a complex, dynamical and non-linear coupling that results from the basal interaction between DNA and RNA polymerase. We present the first software to simulate this coupling, applicable to a wide range of bacterial organisms. TwisTranscripT allows quantifying its contribution in global transcriptional regulation, and provides a mechanistic basis for the widely observed, evolutionarily conserved and currently unexplained co-regulation of adjacent operons that might play an important role in genome evolution. Availability and implementation TwisTranscripT is freely available at https://github.com/sammeyer2017/TwisTranscripT. It is implemented in Python3 and supported on MacOS X, Linux and Windows.

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Hofmann, Christina. "Viele Wörter für ›Schnee‹." psychosozial 42, no. 3 (August 2019): 101–16. http://dx.doi.org/10.30820/0171-3434-2019-3-101.

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Dieser Artikel wirft Licht auf ein besonders im deutschsprachigen Diskurs zu Unrecht vernachlässigtes Kapitel von Jerome Bruners früher Kulturpsychologie der Erziehung und Bildung, nämlich seine Arbeit am Social Studies Curriculum Man: A Course of Study (MACOS) in den 1960er Jahren. Der Grundgedanke des Lehrplans besteht darin, amerikanischen Schüler_innen mithilfe ethnografischer Filmaufnahmen aus der kanadischen Arktis eine neue Perspektive auf die eigene Kultur zu ermöglichen. Dieses Vorhaben weckt aus heutiger Sicht unmittelbar Assoziationen zu unterschiedlichen Konzeptionen interkulturellen Lernens. Im vorliegenden Beitrag wird das anthropologisch ausgerichtete Curriculum in seinen Grundzügen historisch-systematisch rekonstruiert und daraufhin geprüft, ob es sich um ein interkulturelles Lernprogramm avant la lettre handelt.

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Belevich, Ilya, and Eija Jokitalo. "DeepMIB: User-friendly and open-source software for training of deep learning network for biological image segmentation." PLOS Computational Biology 17, no. 3 (March 2, 2021): e1008374. http://dx.doi.org/10.1371/journal.pcbi.1008374.

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We present DeepMIB, a new software package that is capable of training convolutional neural networks for segmentation of multidimensional microscopy datasets on any workstation. We demonstrate its successful application for segmentation of 2D and 3D electron and multicolor light microscopy datasets with isotropic and anisotropic voxels. We distribute DeepMIB as both an open-source multi-platform Matlab code and as compiled standalone application for Windows, MacOS and Linux. It comes in a single package that is simple to install and use as it does not require knowledge of programming. DeepMIB is suitable for everyone interested of bringing a power of deep learning into own image segmentation workflows.

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Hanson, Paul, Michael Organ, Farman Ullah, Qin Zang, Salim Javed, Patrick Porubsky, Benjamin Neuenswander, and Gerald Lushington. "Synthesis of an Isoindoline-Annulated, Tricyclic Sultam Library via Microwave-Assisted, Continuous-Flow Organic Synthesis (MACOS)." Synthesis 44, no. 16 (July 4, 2012): 2547–54. http://dx.doi.org/10.1055/s-0031-1289791.

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Bachynskyy, Ruslan, Oleksii Chaku, and Nataliia Huzynets. "A Software Service for the Garbage Type Recognition Based on the Mobile Computing Devices With Graphical Data Input." Advances in Cyber-Physical Systems 5, no. 1 (November 28, 2017): 1–7. http://dx.doi.org/10.23939/acps2020.01.001.

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The article describes problems of determining the type and automatic sorting of household waste using mobile computing devices. All of the required hardware and partially software, required for implementation of this service, are already present in modern smartphones. iOS and Apple products were selected as the base for the service, due to such advantages over competitors: dual or triple depth camera (TDCS), powerful GPU, Neural Engine coprocessor, high autonomy (2750mAh battery size), sensors that allow for user positioning and navigation in space (GPS, Glonass, Gyroscope) and most important feature is possibility of cross-platform designing, suitable for iOS and macOS (Project Catalina). The recognition process consists of several phases, including capturing of graphic image and detecting the object shape, shape analysis, computing the results, and saving new associations to the database. The analysis itself is implemented using a neural network that is able to learn during its operation. Initially, the algorithm is driven by the selection of photographs with a certain type for the base set of associations, each subsequent scan improves accuracy. Cross-platforming plays a very important role — it allows us to develop a single software service that is initially run on a macOS-based computer for faster learning and then can be easily used on an iOS mobile device. After identifying a particular type of garbage, the route to the nearest recycling point of such type of garbage will be proposed for user or user’s clarification will be requested. User can also manually browse categories and related items, manually search by name of item, and view locations for sorting and recycling in appropriate city. When a completely unknown object arrives, it is possible to refine the information in order to help further learning of the network.

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32

Williams, Don, and Peter D. Burns. "Refining the Theory-to-Practice Path for FADGI Still Imaging." Archiving Conference 2020, no. 1 (April 7, 2020): 39–42. http://dx.doi.org/10.2352/issn.2168-3204.2020.1.0.39.

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The Digital Production Lab in John C. Hodges Library at the University of Tennessee, like many university imaging studios, has long relied on a seasonal and temporary labor force drawn from our student body. Improving human-computer interaction in our production workflows should reduce training time and errors while increasing throughput and worker confidence. In this paper, we present our on-going efforts adapting Elgato's Stream Deck XL hardware to control a computer running Apple's macOS operating system and Phase One's Capture One Pro software using Python and AppleScript code. The paper outlines our custom code linking these parts together, describes how this relatively inexpensive input device streamlines our digitization process, and includes ideas for future application.

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Currat, Mathias, Miguel Arenas, Claudio S. Quilodràn, Laurent Excoffier, and Nicolas Ray. "SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal." Bioinformatics 35, no. 21 (May 11, 2019): 4480–83. http://dx.doi.org/10.1093/bioinformatics/btz311.

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Abstract Summary SPLATCHE3 simulates genetic data under a variety of spatially explicit evolutionary scenarios, extending previous versions of the framework. The new capabilities include long-distance migration, spatially and temporally heterogeneous short-scale migrations, alternative hybridization models, simulation of serial samples of genetic data and a large variety of DNA mutation models. These implementations have been applied independently to various studies, but grouped together in the current version. Availability and implementation SPLATCHE3 is written in C++ and is freely available for non-commercial use from the website http://www.splatche.com/splatche3. It includes console versions for Linux, MacOs and Windows and a user-friendly GUI for Windows, as well as detailed documentation and ready-to-use examples.

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Anam, Khoirul. "IMPLEMENTASI METODE NUMERIK PADA RANGKAIAN LISTRIK MENGGUNAKAN SCILAB." Jurnal Penelitian 5, no. 1 (April 27, 2020): 59–67. http://dx.doi.org/10.46491/jp.v5e1.487.59-67.

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Beberapa kasus pada analisa rangkaian listrik banyak digunakan model matematika dalam menyelesaikannya. Model matematika selanjutnya dirumuskan secara numerik dalam Sistem Persamaan Linier (SPL). Persamaan linier yang dihasilkan dapat diselesaikan dengan menggunakan Metode Numerik yaitu Metode Pembalikan Matriks (matriks invers), metode Cramer, Metode Eliminasi Gauss, Metode Eliminasi Gauss-Jordan dan Metode Dekomposisi LU. Untuk menghitung persamaan dengan jumlah n variable yang tidak diketahui dari sistem yang besar dan kompleks, membutuhkan waktu yang cukup lama dan tidak efisien. Untuk memudahkan dalam perhitungan digunakan aplikasi Bahasa Pemrograman Scilab. Scilab merupakan sebuah freeware yang dapat digunakan secara gratis untuk keperluan pribadi maupun komersial yang tersedia dalam berbagai macam sistem operasi, seperti Windows, Linux, dan MacOS X.

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Atwal, Tajvinder Singh, Mark Scanlon, and Nhien-An Le-Khac. "Shining a light on Spotlight: Leveraging Apple's desktop search utility to recover deleted file metadata on macOS." Digital Investigation 28 (April 2019): S105—S115. http://dx.doi.org/10.1016/j.diin.2019.01.019.

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Kang, Soojin, Giyoon Kim, Myungseo Park, and Jongsung Kim. "Methods for decrypting the data encrypted by the latest Samsung smartphone backup programs in Windows and macOS." Forensic Science International: Digital Investigation 39 (December 2021): 301310. http://dx.doi.org/10.1016/j.fsidi.2021.301310.

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Spackman, Peter R., Michael J. Turner, Joshua J. McKinnon, Stephen K. Wolff, Daniel J. Grimwood, Dylan Jayatilaka, and Mark A. Spackman. "CrystalExplorer: a program for Hirshfeld surface analysis, visualization and quantitative analysis of molecular crystals." Journal of Applied Crystallography 54, no. 3 (April 27, 2021): 1006–11. http://dx.doi.org/10.1107/s1600576721002910.

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CrystalExplorer is a native cross-platform program supported on Windows, MacOS and Linux with the primary function of visualization and investigation of molecular crystal structures, especially through the decorated Hirshfeld surface and its corresponding two-dimensional fingerprint, and through the visualization of void spaces in the crystal via isosurfaces of the promolecule electron density. Over the past decade, significant changes and enhancements have been incorporated into the program, such as the capacity to accurately and quickly calculate and visualize quantitative intermolecular interactions and, perhaps most importantly, the ability to interface with the Gaussian and NWChem programs to calculate quantum-mechanical properties of molecules. The current version, CrystalExplorer21, incorporates these and other changes, and the software can be downloaded and used free of charge for academic research.

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Holbert, Nathan, Betsy Disalvo, and Matthew Berland. "The Rollout of Computer Science Education to Every Student in New York City: A Socio-Contextual Social Network Analysis." Teachers College Record: The Voice of Scholarship in Education 122, no. 11 (November 2020): 1–30. http://dx.doi.org/10.1177/016146812012201106.

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Background CS4All is an $81 million private-public investment aimed at creating the necessary infrastructure to provide computer science experiences to all New York City public-school students by 2025. Purpose In this paper, we examine the history of the CS4All initiative and document the network of actors and their relationships in the system such that we can understand how this reform is enacted, how it might be reactive to external contexts and pressures, and how the structure and pathways of this particular social network might inform similar efforts elsewhere. Research Design To structure our analysis of CS4All, we first examine the most recent historic example of a large-scale curricular reform—Man: A Course of Study (MACOS). By reflecting on the network structure of CS4All in light of the design, enactment, and eventual failure of MACOS, we can identify potential pain points and opportunities in CS4All's 10-year effort. We conducted interviews with core members of the CS4All initiative and examined available public records to construct and analyze a social network of key CS4All stakeholders, other actors, processes, and institutions. Conclusions In our analysis of the CS4All social network, we document how well-connected individuals simultaneously mobilized government resources and grassroots enthusiasm to create the conditions necessary for the initiation of this massive curricular reform effort, and describe the current pathways in place for decision making and resource distribution. Comparing the history and structure of the CS4All initiative to Man: A Course of Study —a failed nationwide curricular reform in the 1960s—we find that CS4All's centralized decision-making process and failure to create and distribute high quality formative assessment tools may lead to challenges to adoption. However, explicit efforts to solicit input from and communicate initiative values to the large diversity of stakeholders throughout NYC, as well as the innovation of a decentralized “buffet-style” curricular approach, may put CS4All on more sure footing.

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Ullah, Farman, Qin Zang, Salim Javed, Patrick Porubsky, Benjamin Neuenswander, Gerald H. Lushington, Paul R. Hanson, and Michael G. Organ. "ChemInform Abstract: Synthesis of an Isoindoline-Annulated, Tricyclic Sultam Library via Microwave-Assisted, Continuous-Flow Organic Synthesis (MACOS)." ChemInform 43, no. 47 (October 30, 2012): no. http://dx.doi.org/10.1002/chin.201247173.

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Shore, Gjergji, Woo-Jin Yoo, Chao-Jun Li, and MichaelâG Organ. "Propargyl Amine Synthesis Catalysed by Gold and Copper Thin Films by Using Microwave-Assisted Continuous-Flow Organic Synthesis (MACOS)." Chemistry - A European Journal 16, no. 1 (January 4, 2010): 126–33. http://dx.doi.org/10.1002/chem.200902396.

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Newe, Axel. "Enriching scientific publications with interactive 3D PDF: an integrated toolbox for creating ready-to-publish figures." PeerJ Computer Science 2 (June 20, 2016): e64. http://dx.doi.org/10.7717/peerj-cs.64.

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Three-dimensional (3D) data of many kinds is produced at an increasing rate throughout all scientific disciplines. The Portable Document Format (PDF) is the de-facto standard for the exchange of electronic documents and allows for embedding three-dimensional models. Therefore, it is a well-suited medium for the visualization and the publication of this kind of data. The generation of the appropriate files has been cumbersome so far. This article presents the first release of a software toolbox which integrates the complete workflow for generating 3D model files and ready-to-publish 3D PDF documents for scholarly publications in a consolidated working environment. It can be used out-of-the-box as a simple working tool or as a basis for specifically tailored solutions. A comprehensive documentation, an example project and a project wizard facilitate the customization. It is available royalty-free and for Windows, MacOS and Linux.

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Lau, Andy M. C., Zainab Ahdash, Chloe Martens, and Argyris Politis. "Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry." Bioinformatics 35, no. 17 (January 14, 2019): 3171–73. http://dx.doi.org/10.1093/bioinformatics/btz022.

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Abstract Summary Hydrogen deuterium exchange-mass spectrometry (HDX-MS) has emerged as a powerful technique for interrogating the conformational dynamics of proteins and their complexes. Currently, analysis of HDX-MS data remains a laborious procedure, mainly due to the lack of streamlined software to process the large datasets. We present Deuteros which is a standalone software designed to be coupled with Waters DynamX HDX data analysis software, allowing the rapid analysis and visualization of data from differential HDX-MS. Availability and implementation Deuteros is open-source and can be downloaded from https://github.com/andymlau/Deuteros, under the Apache 2.0 license. Written in MATLAB and supported on both Windows and MacOS. Requires the MATLAB runtime library. According to the Wellcome Trust and UK research councils' Common Principles on Data Policy on data, software and materials management and sharing, all data supporting this study will be openly available from the software repository.

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Cañas Plaza, José María, Alberto Martín Florido, Eduardo Perdices García, Francisco Rivas Montero, and Roberto Calvo Palomino. "Entorno Docente Universitario para la Programación de los Robots." Revista Iberoamericana de Automática e Informática industrial 15, no. 4 (September 24, 2018): 404. http://dx.doi.org/10.4995/riai.2018.8962.

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Se presenta un entorno docente de robótica universitaria orientado al aprendizaje práctico. Es software libre, multiplataforma (Linux, Windows, MacOS) y hace énfasis en la programación de la inteligencia de los robots. Consta de una colección de prácticas variadas, cercanas a las aplicaciones robóticas que están llegando a la sociedad recientemente (coches autónomos, drones, aspiradoras...).Utiliza el simulador Gazebo como referencia y Python como lenguaje. Para cada práctica se ha programado una aplicación académica que realiza tareas auxiliares como la interfaz gráfica, la conexión con sensores y actuadores concretos, la temporización, etc. y aloja al código del estudiante, que así se concentra en los algoritmos de percepción y control. Cada aplicación está formada por una parte específica preparada, que queda oculta, y el código del estudiante, que simplemente rellena un sencillo fichero plantilla con la lógica del robot. Se ha utilizado con éxito en varios cursos de grado, de máster y cursos de introducción a la robótica.

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Lazarus, David B., Johan Renaudie, Dorina Lenz, Patrick Diver, and Jens Klump. "Raritas: a program for counting high diversity categorical data with highly unequal abundances." PeerJ 6 (October 9, 2018): e5453. http://dx.doi.org/10.7717/peerj.5453.

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Acquiring data on the occurrences of many types of difficult to identify objects are often still made by human observation, for example, in biodiversity and paleontologic research. Existing computer counting programs used to record such data have various limitations, including inflexibility and cost. We describe a new open-source program for this purpose—Raritas. Raritas is written in Python and can be run as a standalone app for recent versions of either MacOS or Windows, or from the command line as easily customized source code. The program explicitly supports a rare category count mode which makes it easier to collect quantitative data on rare categories, for example, rare species which are important in biodiversity surveys. Lastly, we describe the file format used by Raritas and propose it as a standard for storing geologic biodiversity data. ‘Stratigraphic occurrence data’ file format combines extensive sample metadata and a flexible structure for recording occurrence data of species or other categories in a series of samples.

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Yang, Zebo, and Tatsuo Nakajima. "Connecting Smart Objects in IoT Architectures by Screen Remote Monitoring and Control." Computers 7, no. 4 (September 24, 2018): 47. http://dx.doi.org/10.3390/computers7040047.

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Electronic visual display enabled by touchscreen technologies evolves as one of the universal multimedia output methods and a popular input intermediate with touch–interaction. As a result, we can always gain access of an intelligent machine by obtaining control of its display contents. Since remote screen sharing systems are also increasingly prevalent, we propose a cross-platform middleware infrastructure which supports remote monitoring and control functionalities based on remote streaming for networked intelligent devices such as smart phone, computer and smart watch, etc. and home appliances such as smart refrigerator, smart air-conditioner and smart TV, etc. We aim to connect all these devices with display screens, so as to make possible remote monitoring and controlling a certain device by whichever one (usually the nearest one) of display screens among the network. The system is a distributed network consisting of multiple modular nodes of server and client, and is compatible to prevalent operating systems such as Windows, macOS, Unix-like/Linux and Android, etc.

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Breßler, Ingo, Joachim Kohlbrecher, and Andreas F. Thünemann. "SASfit: a tool for small-angle scattering data analysis using a library of analytical expressions." Journal of Applied Crystallography 48, no. 5 (September 20, 2015): 1587–98. http://dx.doi.org/10.1107/s1600576715016544.

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SASfitis one of the mature programs for small-angle scattering data analysis and has been available for many years. This article describes the basic data processing and analysis workflow along with recent developments in theSASfitprogram package (version 0.94.6). They include (i) advanced algorithms for reduction of oversampled data sets, (ii) improved confidence assessment in the optimized model parameters and (iii) a flexible plug-in system for custom user-provided models. A scattering function of a mass fractal model of branched polymers in solution is provided as an example for implementing a plug-in. The newSASfitrelease is available for major platforms such as Windows, Linux and MacOS. To facilitate usage, it includes comprehensive indexed documentation as well as a web-based wiki for peer collaboration and online videos demonstrating basic usage. The use ofSASfitis illustrated by interpretation of the small-angle X-ray scattering curves of monomodal gold nanoparticles (NIST reference material 8011) and bimodal silica nanoparticles (EU reference material ERM-FD-102).

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Kuriata, Aleksander, Valentin Iglesias, Mateusz Kurcinski, Salvador Ventura, and Sebastian Kmiecik. "Aggrescan3D standalone package for structure-based prediction of protein aggregation properties." Bioinformatics 35, no. 19 (March 2, 2019): 3834–35. http://dx.doi.org/10.1093/bioinformatics/btz143.

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Abstract Summary Aggrescan3D (A3D) standalone is a multiplatform Python package for structure-based prediction of protein aggregation properties and rational design of protein solubility. A3D allows the re-design of protein solubility by combining structural aggregation propensity and stability predictions, as demonstrated by a recent experimental study. It also enables predicting the impact of protein conformational fluctuations on the aggregation properties. The standalone A3D version is an upgrade of the original web server implementation—it introduces a number of customizable options, automated analysis of multiple mutations and offers a flexible computational framework for merging it with other computational tools. Availability and implementation A3D standalone is distributed under the MIT license, which is free for academic and non-profit users. It is implemented in Python. The A3D standalone source code, wiki with documentation and examples of use, and installation instructions for Linux, macOS and Windows are available in the A3D standalone repository at https://bitbucket.org/lcbio/aggrescan3d.

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Li, Yang, Pengyu Ni, Shaoqiang Zhang, Guojun Li, and Zhengchang Su. "ProSampler: an ultrafast and accurate motif finder in large ChIP-seq datasets for combinatory motif discovery." Bioinformatics 35, no. 22 (May 9, 2019): 4632–39. http://dx.doi.org/10.1093/bioinformatics/btz290.

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Abstract Motivation The availability of numerous ChIP-seq datasets for transcription factors (TF) has provided an unprecedented opportunity to identify all TF binding sites in genomes. However, the progress has been hindered by the lack of a highly efficient and accurate tool to find not only the target motifs, but also cooperative motifs in very big datasets. Results We herein present an ultrafast and accurate motif-finding algorithm, ProSampler, based on a novel numeration method and Gibbs sampler. ProSampler runs orders of magnitude faster than the fastest existing tools while often more accurately identifying motifs of both the target TFs and cooperators. Thus, ProSampler can greatly facilitate the efforts to identify the entire cis-regulatory code in genomes. Availability and implementation Source code and binaries are freely available for download at https://github.com/zhengchangsulab/prosampler. It was implemented in C++ and supported on Linux, macOS and MS Windows platforms. Supplementary information Supplementary materials are available at Bioinformatics online.

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Eaton, Deren A. R., and Isaac Overcast. "ipyrad: Interactive assembly and analysis of RADseq datasets." Bioinformatics 36, no. 8 (January 6, 2020): 2592–94. http://dx.doi.org/10.1093/bioinformatics/btz966.

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Abstract Summary ipyrad is a free and open source tool for assembling and analyzing restriction site-associated DNA sequence datasets using de novo and/or reference-based approaches. It is designed to be massively scalable to hundreds of taxa and thousands of samples, and can be efficiently parallelized on high performance computing clusters. It is available both as a command line interface and as a Python package with an application programming interface, the latter of which can be used interactively to write complex, reproducible scripts and implement a suite of downstream analysis tools. Availability and implementation ipyrad is a free and open source program written in Python. Source code is available from the GitHub repository (https://github.com/dereneaton/ipyrad/), and Linux and MacOS installs are distributed through the conda package manager. Complete documentation, including numerous tutorials, and Jupyter notebooks demonstrating example assemblies and applications of downstream analysis tools are available online: https://ipyrad.readthedocs.io/.

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Welty, Leah J., Luke V. Rasmussen, Abigail S. Baldridge, and Eric W. Whitley. "Facilitating reproducible research through direct connection of data analysis with manuscript preparation: StatTag for connecting statistical software to Microsoft Word." JAMIA Open 3, no. 3 (October 1, 2020): 342–58. http://dx.doi.org/10.1093/jamiaopen/ooaa043.

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Abstract Objectives To enhance reproducible research by creating a broadly accessible, free, open-source software tool for connecting Microsoft Word to statistical programs (R/R Markdown, Python, SAS, Stata) so that results may be automatically updated in a manuscript. Materials and Methods We developed StatTag for Windows as a Microsoft Word plug-in using C# and for macOS as a native application using Objective-C. Source code is available under the MIT license at https://github.com/stattag. Results StatTag links analysis file(s) (R/R Markdown, SAS, Stata, or Python) and a Word document, invokes the statistical program(s) to obtain results, and embeds selected output in the document. StatTag can accommodate multiple statistical programs with a single document and features an interface to view, edit, and rerun statistical code directly from Word. Discussion and Conclusion StatTag may facilitate reproducibility within increasingly multidisciplinary research teams, improve research transparency through review and publication, and complement data-sharing initiatives.

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