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1

Singh, Shailza, ed. Metagenomic Systems Biology. Singapore: Springer Singapore, 2020. http://dx.doi.org/10.1007/978-981-15-8562-3.

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2

Mitra, Suparna, ed. Metagenomic Data Analysis. New York, NY: Springer US, 2023. http://dx.doi.org/10.1007/978-1-0716-3072-3.

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3

Nelson, Karen E. Metagenomics of the human body. New York: Springer, 2011.

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4

Streit, Wolfgang R., and Rolf Daniel, eds. Metagenomics. New York, NY: Springer New York, 2017. http://dx.doi.org/10.1007/978-1-4939-6691-2.

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Streit, Wolfgang R., and Rolf Daniel, eds. Metagenomics. Totowa, NJ: Humana Press, 2010. http://dx.doi.org/10.1007/978-1-60761-823-2.

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6

Streit, Wolfgang R., and Rolf Daniel, eds. Metagenomics. New York, NY: Springer US, 2023. http://dx.doi.org/10.1007/978-1-0716-2795-2.

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7

Gojobori, Takashi, Tokio Wada, Takanori Kobayashi, and Katsuhiko Mineta, eds. Marine Metagenomics. Singapore: Springer Singapore, 2019. http://dx.doi.org/10.1007/978-981-13-8134-8.

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8

Pantaleo, Vitantonio, and Michela Chiumenti, eds. Viral Metagenomics. New York, NY: Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-7683-6.

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9

Pantaleo, Vitantonio, and Laura Miozzi, eds. Viral Metagenomics. New York, NY: Springer US, 2024. http://dx.doi.org/10.1007/978-1-0716-3515-5.

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10

Nelson, Karen E., ed. Encyclopedia of Metagenomics. New York, NY: Springer New York, 2013. http://dx.doi.org/10.1007/978-1-4614-6418-1.

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11

De Mandal, Surajit, Amrita Kumari Panda, Nachimuthu Senthil Kumar, Satpal Singh Bisht, and Fengliang Jin. Metagenomics and Microbial Ecology. Boca Raton: CRC Press, 2021. http://dx.doi.org/10.1201/9781003042570.

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12

Metagenomics: Methods and protocols. New York, NY: Humana Press, 2010.

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13

Nelson, Karen E. Metagenomics of the human body. New York: Springer, 2011.

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14

Nelson, Karen E., ed. Metagenomics of the Human Body. New York, NY: Springer New York, 2011. http://dx.doi.org/10.1007/978-1-4419-7089-3.

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15

Charles, Trevor C., Mark R. Liles, and Angela Sessitsch, eds. Functional Metagenomics: Tools and Applications. Cham: Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-61510-3.

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16

National Center for Biotechnology Information (U.S.), ed. Metagenomics: Sequences from the environment. Bethesda, Md: National Library of Medicine, NCBI, 2006.

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17

Metagenomics: Theory, methods and applications. Norfolk, UK: Caister Academic, 2010.

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18

Kalia, Vipin Chandra, Yogesh Shouche, Hemant J. Purohit, and Praveen Rahi, eds. Mining of Microbial Wealth and MetaGenomics. Singapore: Springer Singapore, 2017. http://dx.doi.org/10.1007/978-981-10-5708-3.

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19

Chopra, Reena Singh, Chirag Chopra, and Neeta Raj Sharma, eds. Metagenomics: Techniques, Applications, Challenges and Opportunities. Singapore: Springer Singapore, 2020. http://dx.doi.org/10.1007/978-981-15-6529-8.

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20

Metagenomics: Current innovations and future trends. Norfolk, UK: Caister Academic Press, 2011.

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21

Enzyme technologies: Metagenomics, evolution, biocatalysis and biosynthesis. Hoboken, NJ: Wiley, 2010.

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22

Yeh, Wu-Kuang, Hsiu-Chiung Yang, and James R. McCarthy. Enzyme technologies: Metagenomics, evolution, biocatalysis, and biosynthesis. Hoboken, N.J: Wiley, 2010.

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23

Mitra, Suparna. Metagenomic Data Analysis. Springer, 2023.

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24

Singh, Shailza. Metagenomic Systems Biology: Integrative Analysis of the Microbiome. Springer Singapore Pte. Limited, 2021.

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25

Singh, Shailza. Metagenomic Systems Biology: Integrative Analysis of the Microbiome. Springer Singapore Pte. Limited, 2020.

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26

Raffaetà, Roberta. Metagenomic Futures: How Microbiome Research Is Reconfiguring Health and What It Means to Be Human. Routledge, Chapman & Hall, Incorporated, 2022.

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27

Raffaetà, Roberta. Metagenomic Futures: How Microbiome Research Is Reconfiguring Health and What It Means to Be Human. Taylor & Francis Group, 2022.

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28

Raffaetà, Roberta. Metagenomic Futures: How Microbiome Research Is Reconfiguring Health and What It Means to Be Human. Routledge, 2022.

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29

Raffaetà, Roberta. Metagenomic Futures: How Microbiome Research Is Reconfiguring Health and What It Means to Be Human. Taylor & Francis Group, 2022.

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30

Raffaetà, Roberta. Metagenomic Futures: How Microbiome Research Is Reconfiguring Health and What It Means to Be Human. Taylor & Francis Group, 2022.

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31

Nelson, Karen E. Encyclopedia of Metagenomics: Genes, Genomes and Metagenomes. Basics, Methods, Databases and Tools. Springer, 2015.

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32

Nelson, Karen E. Encyclopedia of Metagenomics: Genes, Genomes and Metagenomes. Basics, Methods, Databases and Tools. Springer, 2015.

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33

Nelson, Karen E. Encyclopedia of Metagenomics: Genes, Genomes and Metagenomes. Basics, Methods, Databases and Tools. Springer London, Limited, 2014.

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34

Zhao, Qi, Chin Yen Tay, Liang Wang, and Jian Li, eds. Computational Predictions, Dynamic Tracking, and Evolutionary Analysis of Antibiotic Resistance Through the Mining of Microbial Genomes and Metagenomic Data. Frontiers Media SA, 2022. http://dx.doi.org/10.3389/978-2-88976-013-8.

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35

Wu, Bo, Chen Meng, Wen Li, Jing Feng, and Erlie Jiang. Rapid On-Site Evaluation in Diagnostic Interventional Pulmonology : Volume 4: Metagenomic Sequencing Application in Difficult Cases of Infectious Diseases. Springer, 2020.

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36

Wu, Bo, Chen Meng, Wen Li, Jing Feng, and Erlie Jiang. Rapid on-Site Evaluation in Diagnostic Interventional Pulmonology : Volume 4: Metagenomic Sequencing Application in Difficult Cases of Infectious Diseases. Springer Singapore Pte. Limited, 2021.

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37

Rodriguez-Valera, Francisco, Sarah K. Highlander, and Bryan A. White. Encyclopedia of Metagenomics: Environmental Metagenomics. Springer, 2015.

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38

Rodriguez-Valera, Francisco, Sarah K. Highlander, and Bryan A. White. Encyclopedia of Metagenomics: Environmental Metagenomics. Springer London, Limited, 2014.

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39

Rodriguez-Valera, Francisco, Sarah K. Highlander, and Bryan A. White. Encyclopedia of Metagenomics: Environmental Metagenomics. Springer, 2015.

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40

Metagenomics. Elsevier, 2018. http://dx.doi.org/10.1016/c2016-0-04879-9.

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41

Sugitha, T. C. K., Asish K. Binodh, K. Ramasamy, and U. Sivakumar. Soil Metagenomics. Taylor & Francis Group, 2020.

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42

Sugitha, T. C. K., Asish K. Binodh, K. Ramasamy, and U. Sivakumar. Soil Metagenomics. Taylor & Francis Group, 2020.

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43

Sugitha, T. C. K., Asish K. Binodh, K. Ramasamy, and U. Sivakumar. Soil Metagenomics. Taylor & Francis Group, 2020.

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44

Sugitha, T. C. K., Asish K. Binodh, K. Ramasamy, and U. Sivakumar. Soil Metagenomics. Taylor & Francis Group, 2020.

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45

Sugitha, T. C. K., Asish K. Binodh, K. Ramasamy, and U. Sivakumar. Soil Metagenomics. Taylor & Francis Group, 2020.

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46

Taberlet, Pierre, Aurélie Bonin, Lucie Zinger, and Eric Coissac. Environmental DNA for functional diversity. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198767220.003.0010.

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Chapter 10 “Environmental DNA for functional diversity” discusses the potential of environmental DNA to assess functional diversity. It first focuses on DNA metabarcoding and discusses the extent to which this approach can be used and/or optimized to retrieve meaningful information on the functions of the target community. This knowledge usually involves coarsely defined functional groups (e.g., woody, leguminous, graminoid plants; shredders or decomposer soil organisms; pathogenicity or decomposition role of certain microorganisms). Chapter 10 then introduces metagenomics and metatranscriptomics approaches, their advantages, but also the challenges and solutions to appropriately sampling, sequencing these complex DNA/RNA populations. Chapter 10 finally presents several strategies and software to analyze metagenomes/metatranscriptomes, and discusses their pros and cons.
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47

Izard, Jacques, and Maria Rivera. Metagenomics for Microbiology. Elsevier Science & Technology Books, 2014.

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48

Nelson, Karen E. Encyclopedia of Metagenomics. Springer, 2015.

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49

Metagenomics to Bioremediation. Elsevier, 2023. http://dx.doi.org/10.1016/c2021-0-01450-4.

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50

Metagenomics for Microbiology. Elsevier, 2015. http://dx.doi.org/10.1016/c2012-0-02609-9.

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