Relevant bibliographies by topics / Microbial culturomics

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  1. Journal articles
  2. Dissertations / Theses

Academic literature on the topic 'Microbial culturomics'

Author: Grafiati
Published: 4 June 2021
Last updated: 1 February 2022

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Journal articles on the topic "Microbial culturomics"

1

Angelakis, E. "Microbial culturomics." International Journal of Infectious Diseases 45 (April 2016): 27. http://dx.doi.org/10.1016/j.ijid.2016.02.091.

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2

Dickson, Iain. "Culturomics: illuminating microbial dark matter." Nature Reviews Gastroenterology & Hepatology 14, no. 1 (2016): 3. http://dx.doi.org/10.1038/nrgastro.2016.189.

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3

Pereira, André C., Victor Bandeira, Carlos Fonseca, and Mónica V. Cunha. "Crosstalk Between Culturomics and Microbial Profiling of Egyptian Mongoose (Herpestes ichneumon) Gut Microbiome." Microorganisms 8, no. 6 (2020): 808. http://dx.doi.org/10.3390/microorganisms8060808.

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Recently, we unveiled taxonomical and functional differences in Egyptian mongoose (Herpestes ichneumon) gut microbiota across sex and age classes by microbial profiling. In this study, we generate, through culturomics, extended baseline information on the culturable bacterial and fungal microbiome of the species using the same specimens as models. Firstly, this strategy enabled us to explore cultivable microbial community differences across sexes and to ascertain the influence exerted by biological and environmental contexts of each host in its microbiota signature. Secondly, it permitted us t
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4

Złoch, Michał, Ewelina Maślak, Wojciech Kupczyk, Marek Jackowski, Paweł Pomastowski, and Bogusław Buszewski. "Culturomics Approach to Identify Diabetic Foot Infection Bacteria." International Journal of Molecular Sciences 22, no. 17 (2021): 9574. http://dx.doi.org/10.3390/ijms22179574.

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The main goal of the study was to evaluate the usefulness of the culturomics approach in the reflection of diabetic foot infections (DFIs) microbial compositions in Poland. Superficial swab samples of 16 diabetic foot infection patients (Provincial Polyclinical Hospital in Toruń, Poland) were subjected to culturing using 10 different types of media followed by the identification via the matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) and Biotyper platform. Identified 204 bacterial isolates representing 18 different species—mostly Enterococcus faecali
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5

Lagier, J. C., F. Armougom, M. Million, et al. "Microbial culturomics: paradigm shift in the human gut microbiome study." Clinical Microbiology and Infection 18, no. 12 (2012): 1185–93. http://dx.doi.org/10.1111/1469-0691.12023.

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Mourembou, Gaël, Muhammad Yasir, Esam Ibraheem Azhar, et al. "Rise of Microbial Culturomics: Noncontiguous Finished Genome Sequence and Description ofBeduini massiliensisgen. nov., sp. nov." OMICS: A Journal of Integrative Biology 19, no. 12 (2015): 766–76. http://dx.doi.org/10.1089/omi.2015.0143.

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Nogueira, Teresa, and Ana Botelho. "Metagenomics and Other Omics Approaches to Bacterial Communities and Antimicrobial Resistance Assessment in Aquacultures." Antibiotics 10, no. 7 (2021): 787. http://dx.doi.org/10.3390/antibiotics10070787.

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The shortage of wild fishery resources and the rising demand for human nutrition has driven a great expansion in aquaculture during the last decades in terms of production and economic value. As such, sustainable aquaculture production is one of the main priorities of the European Union’s 2030 agenda. However, the intensification of seafood farming has resulted in higher risks of disease outbreaks and in the increased use of antimicrobials to control them. The selective pressure exerted by these drugs provides the ideal conditions for the emergence of antimicrobial resistance hotspots in aquac
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8

Khelaifia, Saber, Jean-Christophe Lagier, Fehmida Bibi, et al. "Microbial Culturomics to Map Halophilic Bacterium in Human Gut: Genome Sequence and Description of Oceanobacillus jeddahense sp. nov." OMICS: A Journal of Integrative Biology 20, no. 4 (2016): 248–58. http://dx.doi.org/10.1089/omi.2016.0004.

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9

Elsawey, Hend, Sascha Patz, Rahma A. Nemr, et al. "Plant Broth- (Not Bovine-) Based Culture Media Provide the Most Compatible Vegan Nutrition for In Vitro Culturing and In Situ Probing of Plant Microbiota." Diversity 12, no. 11 (2020): 418. http://dx.doi.org/10.3390/d12110418.

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Plant microbiota support the diversity and productivity of plants. Thus, cultivation-dependent approaches are indispensable for in vitro manipulation of hub taxa. Despite recent advances in high-throughput methods, cultivability is lagging behind other environmental microbiomes, notably the human microbiome. As a plant-based culturing strategy, we developed culture media based on a broth of cooked aqueous mixtures of host plants. This improved the in vitro growth of representative isolates of plant microbiota and extended the in situ recovery of plant microbiota. With clover, 16S rRNA gene seq
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Diop, Khoudia, Awa Diop, Anthony Levasseur, et al. "Microbial Culturomics Broadens Human Vaginal Flora Diversity: Genome Sequence and Description ofPrevotella lascolaiisp. nov. Isolated from a Patient with Bacterial Vaginosis." OMICS: A Journal of Integrative Biology 22, no. 3 (2018): 210–22. http://dx.doi.org/10.1089/omi.2017.0151.

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Dissertations / Theses on the topic "Microbial culturomics"

1

Lagier, Jean-Christophe. "Diversité du microbiote digestif humain par culturomics et pyroséquençage." Thesis, Aix-Marseille, 2013. http://www.theses.fr/2013AIXM5023.

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Les relations entre le microbiote intestinal et la santé humaine ont été suggérées par les études métagénomiques. Microbial culturomics utilise de nombreuses conditions de culture avec une méthode d'identification rapide par MALDI-TOF, ou par séquençage de l'ARN 16S pour les colonies non identifiées. L'étude pionnière a permis d'identifier 340 bactéries différentes, dont 31 nouvelles espèces bactériennes et 174 espèces bactériennes décrite pour la première de l'intestin humain. Le séquençage du génome de chaque nouvelle espèce a permis de décrire le plus grand génome d'une bactérie isolée chez
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2

Traore, Sory Ibrahima. "Etude de microbiote digestif africain par culturomics et nouvelle technique d'isolement et de culture de Methanobrevibacter smithii." Thesis, Aix-Marseille, 2018. http://www.theses.fr/2018AIXM0672/document.

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L’étude du microbiote digestif a connu un regain d’intérêt au début des années 2000, avec l’avènement des techniques moléculaires. La culturomics a démontré sa complémentarité depuis 2010 en réduisant une partie des biais des méthodes moléculaires. Une revue sur les techniques d’étude du microbiote digestif et l’analyse du microbiote des sujets africains. Les études de métagénomique en Afrique ont révélé une augmentation de la biodiversité, en particulier des Spirochaetes et des Prevotella chez les africains par rapport aux occidentaux. Sur les 1162 bactéries isolées par culturomics, 476 n'éta
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3

Bellali, Sara. "Évaluation de l'impact de la conservation sur la viabilité et la cultivabilité du microbiote intestinal humain." Thesis, Aix-Marseille, 2019. http://theses.univ-amu.fr.lama.univ-amu.fr/191121_BELLALI_58q14hn462lvr402balo_TH.pdf.

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Le microbiote intestinal humain abrite un grand nombre de micro-organismes qui jouent un rôle crucial dans la santé humaine. Cependant, le nombre de bactéries détectées par des méthodes quantitatives indépendantes de la culture s'est révélé beaucoup plus élevé que celui des bactéries cultivées sur des géloses. Cet écart est connu sous le nom de la « Great plate count anomaly ». L'objectif principal de ce travail était d'expliquer ''l’incultivabilité" des bactéries intestinales et de maintenir leur viabilité. Dans ce travail, nous avons constaté que l'exposition à l'oxygène pendant plus d'une h
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Journal articles
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