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Relevant bibliographies by topics / Microbial ecology. Aquatic ecology / Journal articles

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Journal articles on the topic 'Microbial ecology. Aquatic ecology'

Author: Grafiati

Published: 4 June 2021

Last updated: 1 February 2022

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1

Kemp, Paul F. "Aquatic microbial ecology." Limnology and Oceanography 45, no. 5 (2000): 1211. http://dx.doi.org/10.4319/lo.2000.45.5.1211.

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2

Cognetti, G. "Microbial ecology." Marine Pollution Bulletin 24, no. 5 (1992): 273. http://dx.doi.org/10.1016/0025-326x(92)90567-p.

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3

Cavicchioli, Ricardo. "Microbial ecology of Antarctic aquatic systems." Nature Reviews Microbiology 13, no. 11 (2015): 691–706. http://dx.doi.org/10.1038/nrmicro3549.

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4

Findlay, Stuart. "Stream microbial ecology." Journal of the North American Benthological Society 29, no. 1 (2010): 170–81. http://dx.doi.org/10.1899/09-023.1.

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5

Lewin, Ralph A. "Handbook of Methods in Aquatic Microbial Ecology." Phycologia 33, no. 4 (1994): 308. http://dx.doi.org/10.2216/i0031-8884-33-4-308a.1.

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6

Cavicchioli, Ricardo. "Erratum: Microbial ecology of Antarctic aquatic systems." Nature Reviews Microbiology 13, no. 12 (2015): 795. http://dx.doi.org/10.1038/nrmicro3584.

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7

Grossart, Hans-Peter, and Keilor Rojas-Jimenez. "Aquatic fungi: targeting the forgotten in microbial ecology." Current Opinion in Microbiology 31 (June 2016): 140–45. http://dx.doi.org/10.1016/j.mib.2016.03.016.

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8

del Giorgio, PA. "Progress and perspectives in aquatic microbial ecology: introduction." Aquatic Microbial Ecology 61, no. 3 (2010): 219–20. http://dx.doi.org/10.3354/ame01487.

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9

Simon, M., HP Grossart, B. Schweitzer, and H. Ploug. "Microbial ecology of organic aggregates in aquatic ecosystems." Aquatic Microbial Ecology 28 (2002): 175–211. http://dx.doi.org/10.3354/ame028175.

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10

Caron, David A. "Marine microbial ecology in a molecular world: what does the future hold?" Scientia Marina 69, S1 (2005): 97–110. http://dx.doi.org/10.3989/scimar.2005.69s197.

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11

Marxsen, Jürgen, and Karl-Paul Witzel. "Aquatic microbial ecology in the footsteps of Jürgen Overbeck." Fundamental and Applied Limnology / Archiv für Hydrobiologie 182, no. 2 (2013): 89–90. http://dx.doi.org/10.1127/1863-9135/2013/0478.

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12

Psenner, Roland, Albin Alfreider, and Astrid Schwarz. "Aquatic Microbial Ecology: Water Desert, Microcosm, Ecosystem. What's Next?" International Review of Hydrobiology 93, no. 4-5 (2008): 606–23. http://dx.doi.org/10.1002/iroh.200711044.

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13

Kumaresan, Ramasamy, Krishnan Vinitha, and Kattari Kannan. "Bibliometric analysis of Aquatic Microbial Ecology from 2000 – 2014." International Journal of Research in Library Science 3, no. 2 (2017): 01. http://dx.doi.org/10.26761/ijrls.3.2.2017.1251.

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14

Troussellier, Mare, Claude Courties, and André Vaquer. "Recent applications of flow cytometry in aquatic microbial ecology." Biology of the Cell 78, no. 1-2 (1993): 111–21. http://dx.doi.org/10.1016/0248-4900(93)90121-t.

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15

Kinne, O., F. Rassoulzadegan, and DA Caron. "Ten years 'Aquatic Microbial Ecology': an appreciation by the publisher." Aquatic Microbial Ecology 39 (2005): 1. http://dx.doi.org/10.3354/ame039001.

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16

GRAHAM, JAMES M. "Symposium Introductory Remarks: A Brief History of Aquatic Microbial Ecology." Journal of Protozoology 38, no. 1 (1991): 66–69. http://dx.doi.org/10.1111/j.1550-7408.1991.tb04803.x.

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17

Yentsch, Charles S., and David A. Phinney. "A bridge between ocean optics and microbial ecology." Limnology and Oceanography 34, no. 8 (1989): 1694–705. http://dx.doi.org/10.4319/lo.1989.34.8.1694.

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18

Saccò, Mattia, Nicole E. White, Matthew Campbell, et al. "Metabarcoding under Brine: Microbial Ecology of Five Hypersaline Lakes at Rottnest Island (WA, Australia)." Water 13, no. 14 (2021): 1899. http://dx.doi.org/10.3390/w13141899.

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Hypersaline ecosystems—aquatic environments where concentration of salt exceeds 35 g L−1—host microbial communities that are highly specialised to cope with these extreme conditions. However, our knowledge on the taxonomic diversity and functional metabolisms characterising microbial communities in the water columns of hypersaline ecosystems is still limited, and this may compromise the future preservation of these unique environments. DNA metabarcoding provides a reliable and affordable tool to investigate environmental dynamics of aquatic ecosystems, and its use in brine can be highly inform

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19

Schütt, Christian. "Ecogenetics: A new concept of aquatic microbial ecology at genetical level." SIL Proceedings, 1922-2010 24, no. 4 (1991): 2593–96. http://dx.doi.org/10.1080/03680770.1989.11900029.

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20

Gasol, Josep M., and Carlos M. Duarte. "Comparative analyses in aquatic microbial ecology: how far do they go?" FEMS Microbiology Ecology 31, no. 2 (2000): 99–106. http://dx.doi.org/10.1111/j.1574-6941.2000.tb00675.x.

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21

Kuparinen, J., and H. Galvão. "Microbial ecology: from local to global scales." Aquatic Microbial Ecology 53 (September 18, 2008): 3–11. http://dx.doi.org/10.3354/ame1226.

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22

Kuparinen, J., and H. Galvão. "Microbial ecology: from local to global scales." Aquatic Microbial Ecology 53, no. 1 (2008): 3–11. http://dx.doi.org/10.3354/ame01226.

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23

Reed, Andrew J., and Randall E. Hicks. "Microbial ecology of Lake SuperiorBacteriaandArchaea: An overview." Aquatic Ecosystem Health & Management 14, no. 4 (2011): 386–95. http://dx.doi.org/10.1080/14634988.2011.630282.

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24

Blanchette, Melanie L., and Mark A. Lund. "Aquatic Ecosystems of the Anthropocene: Limnology and Microbial Ecology of Mine Pit Lakes." Microorganisms 9, no. 6 (2021): 1207. http://dx.doi.org/10.3390/microorganisms9061207.

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Mine pit lakes (‘pit lakes’) are new aquatic ecosystems of the Anthropocene. Potentially hundreds of meters deep, these lakes are prominent in the landscape and in the public consciousness. However, the ecology of pit lakes is underrepresented in the literature. The broad goal of this research was to determine the environmental drivers of pelagic microbe assemblages in Australian coal pit lakes. The overall experimental design was four lakes sampled three times, top and bottom, in 2019. Instrument chains were installed in lakes and measurements of in situ water quality and water samples for me

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25

Höfle, M. G. "RNA chemotaxonomy of aquatic bacteria — solution of a dilemma in microbial ecology?" SIL Proceedings, 1922-2010 24, no. 4 (1991): 2591. http://dx.doi.org/10.1080/03680770.1989.11900027.

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26

Mateus-Barros, Erick, Aylan K. Meneghine, Inessa Lacativa Bagatini, et al. "Comparison of two DNA extraction methods widely used in aquatic microbial ecology." Journal of Microbiological Methods 159 (April 2019): 12–17. http://dx.doi.org/10.1016/j.mimet.2019.02.005.

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27

Frederick, J. A., D. Jacobs, and W. R. Jones. "Biofilms and biodiversity: an interactive exploration of aquatic microbial biotechnology and ecology." Journal of Industrial Microbiology and Biotechnology 24, no. 5 (2000): 334–38. http://dx.doi.org/10.1038/sj.jim.2900827.

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28

del Giorgio, PA. "Progress, challenges, and perspectives in marine microbial ecology." Aquatic Microbial Ecology 53, no. 1 (2008): 1. http://dx.doi.org/10.3354/ame01219.

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29

Sosedova, Larisa M., Evgeniy A. Titov, Mikhail A. Novikov, Irina A. Shurygina, and Mikhail G. Shurygin. "Impact of metal nanoparticles on the ecology of aquatic biocenosis and microbial communities (Review)." Hygiene and sanitation 100, no. 1 (2021): 30–35. http://dx.doi.org/10.47470/0016-9900-2021-100-1-30-35.

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This review contains analysis and generalization of data about aquatic ecotoxicity of metal nanoparticles study. This study showed the effect of their impact on the viability of protozoa, algae, microbial communities. A multi-level approach proves to be important as it considers the main characteristics of the studied materials: solubility, agglomeration, degradation. The transformation in the aquatic environment is important in the study of aquatic ecotoxicity. For assessing the state of environment in ecotoxicological experiments, the Great Daphnia (Daphnia magna) was used as a critical orga

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30

Azevedo, Raíza S., Alessandro Del’Duca, Edmo M. Rodrigues, Thiago A. Freato, and Dionéia E. Cesar. "Theory of microbial ecology: Applications in constructing a recirculating aquaculture system." Aquaculture Research 49, no. 12 (2018): 3898–908. http://dx.doi.org/10.1111/are.13860.

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31

Storey, R. G., R. R. Fulthorpe, and D. D. Williams. "Perspectives and predictions on the microbial ecology of the hyporheic zone." Freshwater Biology 41, no. 1 (1999): 119–30. http://dx.doi.org/10.1046/j.1365-2427.1999.00377.x.

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32

Pierce, Melissa L., and J. Evan Ward. "Microbial Ecology of the Bivalvia, with an Emphasis on the Family Ostreidae." Journal of Shellfish Research 37, no. 4 (2018): 793–806. http://dx.doi.org/10.2983/035.037.0410.

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33

Blanchette, Melanie L., Richard Allcock, Jahir Gonzalez, Nina Kresoje, and Mark Lund. "Macroinvertebrates and Microbes (Archaea, Bacteria) Offer Complementary Insights into Mine-Pit Lake Ecology." Mine Water and the Environment 39, no. 3 (2019): 589–602. http://dx.doi.org/10.1007/s10230-019-00647-9.

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Abstract The broad objective of this research was to determine the environmental drivers of macroinvertebrate and microbial assemblages in acidic pit lakes. This is important because pit lake ecosystem development is influenced by prevailing environmental characteristics. Three lakes (Stockton, Kepwari, WO5H) within a larger pit-lake district in Collie, Western Australia were surveyed for spatial variability of benthic macroinvertebrate and microbe (Archaea, Bacteria) assemblage composition as well as potential environmental drivers (riparian condition, aquatic habitat, sediments, and aquatic

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34

López-Archilla, A. I., I. Marin, and R. Amils. "Microbial Community Composition and Ecology of an Acidic Aquatic Environment: The Tinto River, Spain." Microbial Ecology 41, no. 1 (2001): 20–35. http://dx.doi.org/10.1007/s002480000044.

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35

Zablocki, Olivier, Evelien M. Adriaenssens, and Don Cowan. "Diversity and Ecology of Viruses in Hyperarid Desert Soils." Applied and Environmental Microbiology 82, no. 3 (2015): 770–77. http://dx.doi.org/10.1128/aem.02651-15.

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ABSTRACTIn recent years, remarkable progress has been made in the field of virus environmental ecology. In marine ecosystems, for example, viruses are now thought to play pivotal roles in the biogeochemical cycling of nutrients and to be mediators of microbial evolution through horizontal gene transfer. The diversity and ecology of viruses in soils are poorly understood, but evidence supports the view that the diversity and ecology of viruses in soils differ substantially from those in aquatic systems. Desert biomes cover ∼33% of global land masses, and yet the diversity and roles of viruses i

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36

Duarte, Carlos. "Microbial ecology of Lake Pluβee (J. Overbeck and R. J. CHRóST [ed.])". Limnology and Oceanography 40, № 4 (1995): 841–42. http://dx.doi.org/10.4319/lo.1995.40.4.0841.

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37

Pedrós-Alió, Carlos. "Microbial ecology of Lake Pluβsee (J. Overbeck and R. J. Chrost [eds.])". Limnology and Oceanography 40, № 7 (1995): 1345. http://dx.doi.org/10.4319/lo.1995.40.7.1345.

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38

Gignoux-Wolfsohn, SA, WF Precht, EC Peters, BE Gintert, and LS Kaufman. "Ecology, histopathology, and microbial ecology of a white-band disease outbreak in the threatened staghorn coral Acropora cervicornis." Diseases of Aquatic Organisms 137, no. 3 (2020): 217–37. http://dx.doi.org/10.3354/dao03441.

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39

Jacquet, Stéphan, Takeshi Miki, Rachel Noble, Peter Peduzzi, and Steven Wilhelm. "Viruses in aquatic ecosystems: important advancements of the last 20 years and prospects for the future in the field of microbial oceanography and limnology." Advances in Oceanography and Limnology 1, no. 1 (2010): 97. http://dx.doi.org/10.4081/aiol.2010.5297.

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Over the last two decades, viruses in aquatic systems have been observed to modify, influence and control aquatic systems. Since the determination decades ago that viruses were abundant in aquatic ecosystems, researchers have demonstrated that viruses are pervasive and dynamic across the expanse and depth of all aquatic systems as well as at the water-sediment interface. There have been a wide range of methodological advancements during this time. To date, aquatic viruses have been suggested to play vital roles in global and small-scale biogeochemical cycling, community structure, algal bloom

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40

Abella, C. A., and L. J. Garcia-Gil. "Microbial ecology of planktonic filamentous phototrophic bacteria in holomictic freshwater lakes." Hydrobiologia 243-244, no. 1 (1992): 79–86. http://dx.doi.org/10.1007/bf00007022.

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41

Kent, Angela D., Anthony C. Yannarell, James A. Rusak, Eric W. Triplett, and Katherine D. McMahon. "Synchrony in aquatic microbial community dynamics." ISME Journal 1, no. 1 (2007): 38–47. http://dx.doi.org/10.1038/ismej.2007.6.

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42

Apprill, A., H. Holm, AE Santoro, et al. "Microbial ecology of coral-dominated reefs in the Federated States of Micronesia." Aquatic Microbial Ecology 86 (April 22, 2021): 115–36. http://dx.doi.org/10.3354/ame01961.

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Microorganisms are central to the functioning of coral reef ecosystems, but their dynamics are unstudied on most reefs. We examined the microbial ecology of shallow reefs within the Federated States of Micronesia. We surveyed 20 reefs surrounding 7 islands and atolls (Yap, Woleai, Olimarao, Kosrae, Kapingamarangi, Nukuoro, and Pohnpei), spanning 875053 km2. On the reefs, we found consistently higher coral coverage (mean ± SD = 36.9 ± 22.2%; max 77%) compared to macroalgae coverage (15.2 ± 15.5%; max 58%), and low abundances of fish. Reef waters had low inorganic nutrient concentrations and wer

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43

Dolan, JR, F. Rassoulzadegan, and DA Caron. "The first decade of 'Aquatic Microbial Ecology' (1995-2005): evidence for gradualism or punctuated equilibrium?" Aquatic Microbial Ecology 39 (2005): 3–6. http://dx.doi.org/10.3354/ame039003.

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44

Rochera, Carlos, and Antonio Camacho. "Limnology and Aquatic Microbial Ecology of Byers Peninsula: A Main Freshwater Biodiversity Hotspot in Maritime Antarctica." Diversity 11, no. 10 (2019): 201. http://dx.doi.org/10.3390/d11100201.

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Here we present a comprehensive review of the diversity revealed by research in limnology and microbial ecology conducted in Byers Peninsula (Livingston Island, South Shetland Islands, Antarctica) during the last two decades. The site constitutes one of the largest ice-free areas within the Antarctic Peninsula region. Since it has a high level of environmental protection, it is less human-impacted compared to other sites within the South Shetland archipelago. The main investigations in Byers Peninsula focused on the physical and chemical limnology of the lakes, ponds, rivers, and wetlands, as

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45

Luef, Birgit, Thomas R. Neu, and Peter Peduzzi. "Imaging and quantifying virus fluorescence signals on aquatic aggregates: a new method and its implication for aquatic microbial ecology." FEMS Microbiology Ecology 68, no. 3 (2009): 372–80. http://dx.doi.org/10.1111/j.1574-6941.2009.00675.x.

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46

Sebastián, Marta, and Josep M. Gasol. "Visualization is crucial for understanding microbial processes in the ocean." Philosophical Transactions of the Royal Society B: Biological Sciences 374, no. 1786 (2019): 20190083. http://dx.doi.org/10.1098/rstb.2019.0083.

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Recent developments in community and single-cell genomic approaches have provided an unprecedented amount of information on the ecology of microbes in the aquatic environment. However, linkages between each specific microbe's identity and their in situ level of activity (be it growth, division or just metabolic activity) are much more scarce. The ultimate goal of marine microbial ecology is to understand how the environment determines the types of different microbes in nature, their function, morphology and cell-to-cell interactions and to do so we should gather three levels of information, th

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47

Sime-Ngando, Télesphore, and Jonathan Colombet. "Virus et prophages dans les écosystèmes aquatiques." Canadian Journal of Microbiology 55, no. 2 (2009): 95–109. http://dx.doi.org/10.1139/w08-099.

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In this review, available data on the structure (diversity, abundance, biomass) and functional imprints (bacteriolysis, lysogeny, gene transfers, regulation of prokaryotic diversity) of natural viruses in the context of food webs in aquatic microbial ecology, and the related biogeochemical cycles, are summarized. Viruses are the most abundant, and probably the most diverse, biological entities in aquatic ecosystems and in the biosphere (i.e., viriosphere). Aquatic viruses typically exceed 107particles/mL in mesotrophic conditions, the majority being represented by phages without tails and by t

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48

Van Colen, Carl, Graham J. C. Underwood, João Serôdio, and David M. Paterson. "Ecology of intertidal microbial biofilms: Mechanisms, patterns and future research needs." Journal of Sea Research 92 (September 2014): 2–5. http://dx.doi.org/10.1016/j.seares.2014.07.003.

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49

Du, Wanlin, Yang Liu, Jinhui Sun, Naicheng Wu, Yongzhan Mai, and Chao Wang. "The aquatic microbial community: a bibliometric analysis of global research trends (1991– 2018)." Fundamental and Applied Limnology / Archiv für Hydrobiologie 194, no. 1 (2020): 19–32. http://dx.doi.org/10.1127/fal/2020/1305.

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We performed a bibliometric analysis of relevant research trends, based on academic articles about the aquatic microbial community and recorded in the Web of Science during 1991–2018. The number of publications per annum is clearly rising and began to grow rapidly in 2005. Developed countries (e.g.the USA and some European countries) published the most articles, and led international cooperation. International cooperation benefitted from the implementation of the European Union (EU) Water Framework Directive and from the origination and development of molecular biological techniques. A strong

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50

Mayali, Xavier. "NanoSIMS: Microscale Quantification of Biogeochemical Activity with Large-Scale Impacts." Annual Review of Marine Science 12, no. 1 (2020): 449–67. http://dx.doi.org/10.1146/annurev-marine-010419-010714.

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One major objective of aquatic microbial ecology is to understand the distribution of microbial populations over space and time and in response to environmental factors. Perhaps more importantly, it is crucial to quantify how those microbial cells affect biogeochemical processes of interest, such as primary production, nitrogen cycling, or the breakdown of pollutants. One valuable approach to link microbial identity to activity is to carry out incubations with stable-isotope-labeled substrates and then quantify the isotope incorporation by individual microbial cells using nanoscale secondary i

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