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Journal articles on the topic 'Microbial-plant associations'

Author: Grafiati

Published: 5 June 2025

Last updated: 1 August 2025

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1

Ivanova, A. A., A. A. Vetrova, A. E. Filonov, and A. M. Boronin. "Oil Biodegradation by Microbial–Plant Associations." Прикладная биохимия и микробиология 51, no. 2 (2015): 191–97. http://dx.doi.org/10.7868/s0555109915020063.

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Ivanova, A. A., A. A. Vetrova, A. E. Filonov, and A. M. Boronin. "Oil biodegradation by microbial-plant associations." Applied Biochemistry and Microbiology 51, no. 2 (2015): 196–201. http://dx.doi.org/10.1134/s0003683815020064.

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Hassand Mohammad Hassan and Sarwari Atiqullah. ""THE MICROBIAL PLANT ASSOCIATIONS AND THEIR CONNECTION METHODS "." Bulletin of Toraighyrov University. Chemistry & Biology series, no. 2.2024 (December 17, 2024): 65–75. https://doi.org/10.48081/gaur5915.

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As we know, all living things have direct or indirect relationships with each other. Some living things are alive that we cannot normally see with our eyes; that is, they have very small structures, but most of these living things have vital importance in our lives. This paper explores the complex and intimate relationships between certain microorganisms, such as plants, bacteria, and fungi, to include the relationship between mycorrhiza, nitrogen-fixing bacteria, and host mortality. It also highlights the importance of these relationships in nutrient cycling, stress tolerance, and disease res

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Poudel, R., A. Jumpponen, D. C. Schlatter, et al. "Microbiome Networks: A Systems Framework for Identifying Candidate Microbial Assemblages for Disease Management." Phytopathology® 106, no. 10 (2016): 1083–96. http://dx.doi.org/10.1094/phyto-02-16-0058-fi.

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Network models of soil and plant microbiomes provide new opportunities for enhancing disease management, but also challenges for interpretation. We present a framework for interpreting microbiome networks, illustrating how observed network structures can be used to generate testable hypotheses about candidate microbes affecting plant health. The framework includes four types of network analyses. “General network analysis” identifies candidate taxa for maintaining an existing microbial community. “Host-focused analysis” includes a node representing a plant response such as yield, identifying ta

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Stone, BA. "Cell Walls in Plant-Microorganism Associations." Functional Plant Biology 16, no. 1 (1989): 5. http://dx.doi.org/10.1071/pp9890005.

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In this review the surface structures of plants and microorganisms are briefly compared, the role of plant walls in recognition and communication events in pathogenesis and the changes occurring in walls as part of the plant's defence mechanisms are considered. Pathogenesis-related proteins with hydrolytic action on pathogen walls and the callose response are briefly discussed. Finally, wall-related phenomena in non-pathogenic associations between plants and microbial symbionts, exemplified by Rhizobium-root hair and mycorrhizal fungus-root associations are described.

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Li, Cui, Jinxian Liu, Jiabing Bao, Tiehang Wu, and Baofeng Chai. "Effect of Light Heterogeneity Caused by Photovoltaic Panels on the Plant–Soil–Microbial System in Solar Park." Land 12, no. 2 (2023): 367. http://dx.doi.org/10.3390/land12020367.

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The large-scale construction of photovoltaic (PV) panels causes heterogeneity in environmental factors, such as light, precipitation, and wind speed, which may lead to microhabitat climate changes that may affect ecosystems. In this study, plant–soil–microbial systems in shady and non-shady gaps of PV panels in a solar park in Northern China were investigated. The shading caused by the PV panels significantly affected the alpha diversity of plant and fungal communities (p < 0.05). The compositions of plant and soil microbial (bacteria, fungi, and protists) communities were significantly dif

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Korneykova, Maria V., Vladimir A. Myazin, Nadezhda V. Fokina, and Alexandra A. Chaporgina. "Bioremediation Of Soil Of The Kola Peninsula (Murmansk Region) Contaminated With Diesel Fuel." GEOGRAPHY, ENVIRONMENT, SUSTAINABILITY 14, no. 1 (2021): 171–76. http://dx.doi.org/10.24057/2071-9388-2019-170.

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This work focuses on the creation and use of associations of hydrocarbon-oxidizing microorganisms. Bioremediation of soils with the help of mixed cultural and associations of microorganisms provides wider adaptive possibilities than individual species. This is especially important in conditions of short northern summer. The results of field experiments showed that microbial associations based on indigenous microorganisms (bacteria Pseudomonas fluorescens, P. putida, P. baetica, Microbacterium paraoxydans and fungi Penicillium commune, P. canescens st. 1, P. simplicissimum st. 1) with mineral f

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Austin, Publishing Group. "Plant Microbial Interactions in the Rhizosphere: Associations to Plant Growth Promoting Rhizosphere Microorganisms, Genetic Diversity, Competition and Interactions with Host Plants." Annals of Agricultural & Crop Sciences 8, no. 4 (2023): 1142. https://doi.org/10.26420/annagriccropsci.2023.1142.

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Summary Microbial interactions are crucial for successful establishment and maintenance of a microbial population. These interactions occur by the environmental recognition followed by transference of molecular and genetic information that include many mechanisms and classes of molecules. Microorganisms are rarely encountered as single species populations in the environment, since studies in different habitats have shown that an enormous richness and abundance variation are usually detected in a small sample. The rhizosphere is known to be a hot spot of microbial activities. Therefore, rhizosp

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Yu, Jingjing, Wei Cong, Yi Ding, Lixiao Jin, Jing Cong, and Yuguang Zhang. "Interkingdom Plant–Soil Microbial Ecological Network Analysis under Different Anthropogenic Impacts in a Tropical Rainforest." Forests 13, no. 8 (2022): 1167. http://dx.doi.org/10.3390/f13081167.

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Plants and their associated soil microorganisms interact with each other and form complex relationships. The effects of slash-and-burn agriculture and logging on aboveground plants and belowground microorganisms have been extensively studied, but research on plant–microbial interkingdom ecological networks is lacking. In this study, using old growth forest as a control, we used metagenomic data (ITS and 16S rRNA gene amplified sequences) and plant data to obtain interdomain species association patterns for three different soil disturbance types (slash-and-burn, clear cutting and selective cutt

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Doni, Febri, Nurul Shamsinah Mohd Suhaimi, Muhamad Shakirin Mispan, et al. "Microbial Contributions for Rice Production: From Conventional Crop Management to the Use of ‘Omics’ Technologies." International Journal of Molecular Sciences 23, no. 2 (2022): 737. http://dx.doi.org/10.3390/ijms23020737.

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Rice, the main staple food for about half of the world’s population, has had the growth of its production stagnate in the last two decades. One of the ways to further improve rice production is to enhance the associations between rice plants and the microbiome that exists around, on, and inside the plant. This article reviews recent developments in understanding how microorganisms exert positive influences on plant growth, production, and health, focusing particularly on rice. A variety of microbial species and taxa reside in the rhizosphere and the phyllosphere of plants and also have multipl

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Saikia, Deepshikha, Sharmila Dutta Deka, Lupita Borah, Rishikesh Phukan, and Lisha Bordoloi. "Microbial Communities in Rice: Their Role in Nutrient Dynamics and Yield Enhancement." International Journal of Environment and Climate Change 15, no. 7 (2025): 299–310. https://doi.org/10.9734/ijecc/2025/v15i74930.

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Plants are in a dynamic web of biotic and abiotic associations, commonly called the phytobiome. Of the biotic components, the plant microbiome is at the core of managing plant health, growth, and productivity. Understanding the structure and function of microbial populations that live in association with plants is key to understanding plant-microbe interactions and their influence on crop performance. Rice (Oryza sativa L.), a food source for over half the world's population, is faced with mounting production issues with limited arable land, soil erosion and hence unsustainable agriculture. Th

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El Amrani, Belkacem. "Insights into the Biotic Factors Shaping Ectomycorrhizal Associations." Biology 13, no. 12 (2024): 1044. https://doi.org/10.3390/biology13121044.

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Ectomycorrhizal (EM) associations are essential symbiotic relationships that contribute significantly to the health and functioning of forest ecosystems. This review examines the biotic factors that influence EM associations, focusing on plant and fungal diversity, host specificity, and microbial interactions. Firstly, the diversity of host plants and ectomycorrhizal fungi (EMF) is discussed, highlighting how the richness of these organisms affects the formation and success of EM symbioses. Next, host specificity is explored, with a focus on the complex relationships between EMF and their host

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Breuninger, Taylor A., Nina Wawro, Dennis Freuer, et al. "Fecal Bile Acids and Neutral Sterols Are Associated with Latent Microbial Subgroups in the Human Gut." Metabolites 12, no. 9 (2022): 846. http://dx.doi.org/10.3390/metabo12090846.

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Bile acids, neutral sterols, and the gut microbiome are intricately intertwined and each affects human health and metabolism. However, much is still unknown about this relationship. This analysis included 1280 participants of the KORA FF4 study. Fecal metabolites (primary and secondary bile acids, plant and animal sterols) were analyzed using a metabolomics approach. Dirichlet regression models were used to evaluate associations between the metabolites and twenty microbial subgroups that were previously identified using latent Dirichlet allocation. Significant associations were identified betw

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Gornish, Elise S., Noah Fierer, and Albert Barberán. "Associations between an Invasive Plant (Taeniatherum caput-medusae, Medusahead) and Soil Microbial Communities." PLOS ONE 11, no. 9 (2016): e0163930. http://dx.doi.org/10.1371/journal.pone.0163930.

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Feng, L., and I. R. Kennedy. "Biodegradation and plant protection from the herbicide 2,4-D by plant-microbial associations in cotton production systems." Biotechnology and Bioengineering 54, no. 6 (1997): 513–19. http://dx.doi.org/10.1002/(sici)1097-0290(19970620)54:6<513::aid-bit2>3.0.co;2-m.

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Van Bel, Mikayla, Amanda E. Fisher, Laymon Ball, J. Travis Columbus, and Renaud Berlemont. "Phylosymbiosis in the Rhizosphere Microbiome Extends to Nitrogen Cycle Functional Potential." Microorganisms 9, no. 12 (2021): 2476. http://dx.doi.org/10.3390/microorganisms9122476.

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Most plants rely on specialized root-associated microbes to obtain essential nitrogen (N), yet not much is known about the evolutionary history of the rhizosphere–plant interaction. We conducted a common garden experiment to investigate the plant root–rhizosphere microbiome association using chloridoid grasses sampled from around the world and grown from seed in a greenhouse. We sought to test whether plants that are more closely related phylogenetically have more similar root bacterial microbiomes than plants that are more distantly related. Using metagenome sequencing, we found that there is

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O’Banion, Bridget S., Lindsey O’Neal, Gladys Alexandre, and Sarah L. Lebeis. "Bridging the Gap Between Single-Strain and Community-Level Plant-Microbe Chemical Interactions." Molecular Plant-Microbe Interactions® 33, no. 2 (2020): 124–34. http://dx.doi.org/10.1094/mpmi-04-19-0115-cr.

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Although the influence of microbiomes on the health of plant hosts is evident, specific mechanisms shaping the structure and dynamics of microbial communities in the phyllosphere and rhizosphere are only beginning to become clear. Traditionally, plant–microbe interactions have been studied using cultured microbial isolates and plant hosts but the rising use of ‘omics tools provides novel snapshots of the total complex community in situ. Here, we discuss the recent advances in tools and techniques used to monitor plant–microbe interactions and the chemical signals that influence these relations

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Kim, Anastasiia, Sanna Sevanto, Eric R. Moore, and Nicholas Lubbers. "Latent Dirichlet Allocation modeling of environmental microbiomes." PLOS Computational Biology 19, no. 6 (2023): e1011075. http://dx.doi.org/10.1371/journal.pcbi.1011075.

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Interactions between stressed organisms and their microbiome environments may provide new routes for understanding and controlling biological systems. However, microbiomes are a form of high-dimensional data, with thousands of taxa present in any given sample, which makes untangling the interaction between an organism and its microbial environment a challenge. Here we apply Latent Dirichlet Allocation (LDA), a technique for language modeling, which decomposes the microbial communities into a set of topics (non-mutually-exclusive sub-communities) that compactly represent the distribution of ful

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19

Naik, Madeeha, Zafir A. Naik, Shafqat Mehraj, et al. "Endophytic Microbiota of Diverse Apple Cultivars Reveals Cultivar-specific Microbial Associations." Journal of Advances in Biology & Biotechnology 28, no. 4 (2025): 808–18. https://doi.org/10.9734/jabb/2025/v28i42237.

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Endophytic fungi are key components of plant microbiomes, contributing to host health, stress tolerance, and ecological adaptability. In apple (Malus domestica), the diversity and distribution of endophytic communities may be influenced by host genotype, yet comprehensive assessments across cultivars remain limited. This study investigates the culturable fungal endophytic communities associated with diverse apple cultivars to evaluate patterns of microbial diversity, community structure, and potential cultivar-specific associations. Culturable fungi were isolated, identified, and analyzed usin

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Khatoon, Zobia, Ma del Carmen Orozco-Mosqueda, and Gustavo Santoyo. "Microbial Contributions to Heavy Metal Phytoremediation in Agricultural Soils: A Review." Microorganisms 12, no. 10 (2024): 1945. http://dx.doi.org/10.3390/microorganisms12101945.

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Phytoremediation is a sustainable technique that employs plants to reinforce polluted environments such as agroecosystems. In recent years, new strategies involving the plant microbiome as an adjuvant in remediation processes have been reported. By leveraging this microbial assistance to remediate soils contaminated with heavy metals such As, Pb, Cd, Hg, and Cr, plants can sequester, degrade, or stabilize contaminants more efficiently. Remarkably, some plant species are known for their hyper-accumulative traits in synergy with their microbial partners and can successfully mitigate heavy metal

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Koopman, Margaret M., Danielle M. Fuselier, Sarah Hird, and Bryan C. Carstens. "The Carnivorous Pale Pitcher Plant Harbors Diverse, Distinct, and Time-Dependent Bacterial Communities." Applied and Environmental Microbiology 76, no. 6 (2010): 1851–60. http://dx.doi.org/10.1128/aem.02440-09.

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ABSTRACT The ability of American carnivorous pitcher plants (Sarracenia) to digest insect prey is facilitated by microbial associations. Knowledge of the details surrounding this interaction has been limited by our capability to characterize bacterial diversity in this system. To describe microbial diversity within and between pitchers of one species, Sarracenia alata, and to explore how these communities change over time as pitchers accumulate and digest insect prey, we collected and analyzed environmental sequence tag (454 pyrosequencing) and genomic fingerprint (automated ribosomal intergen

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Anokhina, T. O., V. V. Kochetkov, N. F. Zelenkova, V. V. Balakshina, and A. M. Boronin. "Biodegradation of Phenanthrene by Pseudomonas Bacteria Bearing Rhizospheric Plasmids in Model Plant–Microbial Associations." Applied Biochemistry and Microbiology 40, no. 6 (2004): 568–72. http://dx.doi.org/10.1023/b:abim.0000046992.01220.35.

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Hackett, Sean C., Alison J. Karley, and Alison E. Bennett. "Unpredicted impacts of insect endosymbionts on interactions between soil organisms, plants and aphids." Proceedings of the Royal Society B: Biological Sciences 280, no. 1768 (2013): 20131275. http://dx.doi.org/10.1098/rspb.2013.1275.

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Ecologically significant symbiotic associations are frequently studied in isolation, but such studies of two-way interactions cannot always predict the responses of organisms in a community setting. To explore this issue, we adopt a community approach to examine the role of plant–microbial and insect–microbial symbioses in modulating a plant–herbivore interaction. Potato plants were grown under glass in controlled conditions and subjected to feeding from the potato aphid Macrosiphum euphorbiae . By comparing plant growth in sterile, uncultivated and cultivated soils and the performance of M. e

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Lyu, Dongmei, Jonathan Zajonc, Antoine Pagé, et al. "Plant Holobiont Theory: The Phytomicrobiome Plays a Central Role in Evolution and Success." Microorganisms 9, no. 4 (2021): 675. http://dx.doi.org/10.3390/microorganisms9040675.

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Under natural conditions, plants are always associated with a well-orchestrated community of microbes—the phytomicrobiome. The nature and degree of microbial effect on the plant host can be positive, neutral, or negative, and depends largely on the environment. The phytomicrobiome is integral for plant growth and function; microbes play a key role in plant nutrient acquisition, biotic and abiotic stress management, physiology regulation through microbe-to-plant signals, and growth regulation via the production of phytohormones. Relationships between the plant and phytomicrobiome members vary i

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Mandwa, Aashutosh Kumar, Atul Kumar Bhardwaj, Rajesh Kumar, K. K. Chandra, Chanchal Kumari, and S. K. Padey. "Impact of Urban Xenobiotics on Mycorrhizal Associations in Urban Plants." Nature Environment and Pollution Technology 23, no. 4 (2024): 2049–57. https://doi.org/10.46488/nept.2024.v23i04.012.

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Urban xenobiotics are a vital contamination phenomenon of urban plants in the overall country. They are a result of human activity due to growing urbanization and population growth. There are extensive sources of both natural (soil or rock erosion, fires, biodegradation, and volcanic eruptions) and anthropogenic (soil pollution, air, and herbicides). Currently, the demand for pharmaceuticals, compared to the growing population, has placed a risk on the urban plant. Additionally, the production of illegal drugs has caused the release of dangerous carcinogens into fungal activities, which will h

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Torto-Alalibo, Trudy, Candace W. Collmer, Michelle Gwinn-Giglio, et al. "Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology." Microbiology and Molecular Biology Reviews 74, no. 4 (2010): 479–503. http://dx.doi.org/10.1128/mmbr.00017-10.

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SUMMARY Microbes form intimate relationships with hosts (symbioses) that range from mutualism to parasitism. Common microbial mechanisms involved in a successful host association include adhesion, entry of the microbe or its effector proteins into the host cell, mitigation of host defenses, and nutrient acquisition. Genes associated with these microbial mechanisms are known for a broad range of symbioses, revealing both divergent and convergent strategies. Effective comparisons among these symbioses, however, are hampered by inconsistent descriptive terms in the literature for functionally sim

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Parisy, Bastien, Niels M. Schmidt, Helena Wirta, et al. "Ecological signals of arctic plant-microbe associations are consistent across eDNA and vegetation surveys." Metabarcoding and Metagenomics 7 (August 9, 2023): e99979. https://doi.org/10.3897/mbmg.7.99979.

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Understanding how different taxa respond to abiotic characteristics of the environment is of key interest for understanding the assembly of communities. Yet, whether eDNA data will suffice to accurately capture environmental imprints has been the topic of some debate. In this study, we characterised patterns of species occurrences and co-occurrences in Zackenberg in northeast Greenland using environmental DNA. To explore the potential for extracting ecological signals from eDNA data alone, we compared two approaches (visual vegetation surveys and soil eDNA metabarcoding) to describing plant co

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Dellagi, Alia, Isabelle Quillere, and Bertrand Hirel. "Beneficial soil-borne bacteria and fungi: a promising way to improve plant nitrogen acquisition." Journal of Experimental Botany 71, no. 15 (2020): 4469–79. http://dx.doi.org/10.1093/jxb/eraa112.

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Abstract Nitrogen (N) is an essential element for plant productivity, thus, it is abundantly applied to the soil in the form of organic or chemical fertilizers that have negative impacts on the environment. Exploiting the potential of beneficial microbes and identifying crop genotypes that can capitalize on symbiotic associations may be possible ways to significantly reduce the use of N fertilizers. The best-known example of symbiotic association that can reduce the use of N fertilizers is the N2-fixing rhizobial bacteria and legumes. Bacterial taxa other than rhizobial species can develop ass

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AjemaGebisa, Leta. "Associations of Arbuscular Mycorrhizal Fungi (AMF) for Enhancements in Soil Fertility and Promotion of Plant Growth: A Review." Advances in Bioscience and Bioengineering 12, no. 4 (2024): 72–80. http://dx.doi.org/10.11648/j.abb.20241204.11.

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Arbuscular Mycorrhizal Fungi are used for soil fertility enhancements and stimulating plant growth in which they association with other organisms like terrestrial plants. Mycorrhizas create an association between fungi and the roots of plants. Therefore, the review was made to point out important fungal species involved in fungal plant interaction and their major roles in agriculture as well as ecosystem. 80% of plants form associations with mycorrhizal fungi. The fungal are used to use their different organs like chain, arbuscular, vesicle, supportive cells and spore to interact with the othe

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WARD, MICHELLE, RADHIKA DHINGRA, JUSTIN V. REMAIS, et al. "Associations between Weather and Microbial Load on Fresh Produce Prior to Harvest." Journal of Food Protection 78, no. 4 (2015): 849–54. http://dx.doi.org/10.4315/0362-028x.jfp-14-381.

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Contaminated produce causes approximately 1 million cases of foodborne illness and 1 billion dollars in damages to the U.S. economy annually. The environmental conditions, especially weather, that influence the inoculation, proliferation, and dispersal of microbial load on produce are not well understood. Using a mixed models approach, we examined the relationship of temperature and precipitation to microbial indicators of contamination on fresh produce on the farm over a week-long period prior to harvest. Between 2000 and 2002, we assayed for four microbial indicators of contamination (aerobi

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Dixon, Mary M., Antisar Afkairin, Daniel K. Manter, and Jorge Vivanco. "Rhizosphere Microbiome Co-Occurrence Network Analysis across a Tomato Domestication Gradient." Microorganisms 12, no. 9 (2024): 1756. http://dx.doi.org/10.3390/microorganisms12091756.

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When plant-available phosphorus (P) is lost from a soil solution, it often accumulates in the soil as a pool of unavailable legacy P. To acquire legacy P, plants employ recovery strategies, such as forming associations with soil microbes. However, the degree to which plants rely on microbial associations for this purpose varies with crop domestication and subsequent breeding. Here, by generating microbial co-occurrence networks, we sought to explore rhizosphere bacterial interactions in low-P conditions and how they change with tomato domestication and breeding. We grew wild tomato, traditiona

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Kovalski Mitter, Eduardo, Renato de Freitas, and James J. Germida. "Microbial communities associated with barley growing in an oil sands reclamation area in Alberta, Canada." Canadian Journal of Microbiology 64, no. 12 (2018): 1004–19. http://dx.doi.org/10.1139/cjm-2018-0324.

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Microbial communities that colonize the plant rhizosphere and the root interior can ameliorate plant stress and promote growth. These plant–microbe associations are being investigated to assist in reclamation soils in northern Alberta. This study assessed the diversity of bacterial species associated with barley plants growing at different cover managements and slope positions in an oil sands reclamation area. Phospholipid fatty acid analysis of the microbial communities indicated that both cover type and slope, in addition to soil total and organic carbon, NH4+, and organic matter, were signi

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Bhuvaneswari, R., K. R. Saravanan, S. Vennila, and S. Suganthi. "Plant-Microbe Interactions: Implications for Growth and Soil Health." Plant Science Archives 6, no. 2 (2021): 1–3. https://doi.org/10.51470/psa.2021.6.2.01.

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Plant-microbe interactions are fundamental to enhancing plant growth, improving soil health, and fostering sustainable agricultural practices. These interactions, involving beneficial bacteria, fungi, and other microorganisms, drive nutrient cycling, promote disease resistance, and bolster stress tolerance in plants. Symbiotic relationships, such as nitrogen fixation and mycorrhizal associations, play a pivotal role in nutrient acquisition, while plant growth-promoting microorganisms contribute to hormone production and biocontrol. Furthermore, microbial communities enhance soil structure, wat

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Perkowski, Evan A., Elizabeth F. Waring, and Nicholas G. Smith. "Root mass carbon costs to acquire nitrogen are determined by nitrogen and light availability in two species with different nitrogen acquisition strategies." Journal of Experimental Botany 72, no. 15 (2021): 5766–76. http://dx.doi.org/10.1093/jxb/erab253.

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Abstract Plant nitrogen acquisition requires carbon to be allocated belowground to build roots and sustain microbial associations. This carbon cost to acquire nitrogen varies by nitrogen acquisition strategy; however, the degree to which these costs vary due to nitrogen availability or demand has not been well tested under controlled conditions. We grew a species capable of forming associations with nitrogen-fixing bacteria (Glycine max) and a species not capable of forming such associations (Gossypium hirsutum) under four soil nitrogen levels to manipulate nitrogen availability and four light

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Hassani, M. Amine, Ezgi Özkurt, Heike Seybold, Tal Dagan, and Eva H. Stukenbrock. "Interactions and Coadaptation in Plant Metaorganisms." Annual Review of Phytopathology 57, no. 1 (2019): 483–503. http://dx.doi.org/10.1146/annurev-phyto-082718-100008.

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Plants associate with a wide diversity of microorganisms. Some microorganisms engage in intimate associations with the plant host, collectively forming a metaorganism. Such close coexistence with plants requires specific adaptations that allow microorganisms to overcome plant defenses and inhabit plant tissues during growth and reproduction. New data suggest that the plant immune system has a broader role beyond pathogen recognition and also plays an important role in the community assembly of the associated microorganism. We propose that core microorganisms undergo coadaptation with their pla

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Mehlferber, Elijah C., Reena Debray, Asa E. Conover, et al. "Phyllosphere microbial associations improve plant reproductive success." Frontiers in Plant Science 14 (December 8, 2023). http://dx.doi.org/10.3389/fpls.2023.1273330.

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The above-ground (phyllosphere) plant microbiome is increasingly recognized as an important component of plant health. We hypothesized that phyllosphere bacterial recruitment may be disrupted in a greenhouse setting, and that adding a bacterial amendment would therefore benefit the health and growth of host plants. Using a newly developed synthetic phyllosphere bacterial microbiome for tomato (Solanum lycopersicum), we tested this hypothesis across multiple trials by manipulating microbial inoculation of leaves and measuring subsequent plant growth and reproductive success, comparing results f

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Lajoie, Geneviève, and Laurine Dariel. "How Useful Are Plant Traits in Explaining Variation in Phyllosphere Microbial Abundance and Composition Across Hosts?" Environmental Microbiology 27, no. 6 (2025). https://doi.org/10.1111/1462-2920.70123.

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ABSTRACTPlant taxonomy has emerged as a key driver of plant–microbe associations, but the mechanisms underlying these associations remain poorly understood. By defining selective environmental gradients for microbial taxa, plant traits can provide more proximate explanations of microbial taxonomic turnover across plants than plant taxonomy alone. Whether key plant traits may generally predict plant–microbe associations, however, remains unknown. Here, we conducted a systematic review of the phyllosphere literature to evaluate whether specific plant traits consistently explained variation in th

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Berlow, Mae, Miles Mesa, Mikayla Creek, et al. "Plant G × Microbial E: Plant Genotype Interaction with Soil Bacterial Community Shapes Rhizosphere Composition During Invasion." Microbial Ecology 87, no. 1 (2024). http://dx.doi.org/10.1007/s00248-024-02429-5.

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AbstractIt is increasingly recognized that different genetic variants of hosts can uniquely shape their microbiomes. Invasive species often evolve in their introduced ranges, but little is known about the potential for their microbial associations to change during invasion as a result. We asked whether host genotype (G), microbial environment (E), or their interaction (G × E) affected the composition and diversity of host-associated microbiomes in Centaurea solstitialis (yellow starthistle), a Eurasian plant that is known to have evolved novel genotypes and phenotypes and to have altered micro

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Chen, Yongjian, Jialiang Kuang, Pandeng Wang, Wensheng Shu, and Albert Barberán. "Associations between human impacts and forest soil microbial communities." Elementa: Science of the Anthropocene 8, no. 1 (2020). http://dx.doi.org/10.1525/elementa.005.

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We are living in a new epoch—the Anthropocene, in which human activity is reshaping global biodiversity at an unprecedented rate. Increasing efforts are being made toward a better understanding of the associations between human activity and the geographic patterns in plant and animal communities. However, similar efforts are rarely applied to microbial communities. Here, we collected 472 forest soil samples across eastern China, and the bacterial and fungal communities in those samples were determined by high-throughput sequencing of 16S rRNA gene and internal transcribed spacer region, respec

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Zhai, Changchun, Yunfeng Yang, Lingjie Kong, et al. "Nitrogen deposition decouples grassland plant community from soil bacterial and fungal communities along a precipitation gradient." Journal of Ecology, March 27, 2025. https://doi.org/10.1111/1365-2745.70032.

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Abstract Plant–soil microbe interactions play a pivotal role in supporting plant health and growth, but it remains poorly understood how global change driving forces affect the associations between plants and microbial communities. Based on a 3‐year (2019–2021) field experiment with changing precipitation and N addition manipulations in Inner Mongolia, we examined plant and soil microbial communities and their interactions under changing precipitation and N addition. Microbial community dissimilarities increased with increasing differences in soil moisture, regardless of N levels. Plant commun

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Yan, Kun, Shuqi Ma, Qiliang Zhu, Huimei Tian, and Yanping Wang. "Microbial Biotic Associations Dominated Adaptability Differences of Dioecious Poplar Under Salt Stress." Plant, Cell & Environment, January 2, 2025. https://doi.org/10.1111/pce.15350.

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AbstractHow different stress responses by male and female plants are influenced by interactions with rhizosphere microbes remains unclear. In this study, we employed poplar as a dioecious model plant and quantified biotic associations between microorganisms to explore the relationship between microbial associations and plant adaptation. We propose a health index (HI) to comprehensively characterize the physiological characteristics and adaptive capacity of plants under stress. It was found that male poplars demonstrated higher salt stress tolerance than females, and root‐secreted citric acid w

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Wang, Yayu, Xiaolin Wang, Shuai Sun, et al. "GWAS, MWAS and mGWAS provide insights into precision agriculture based on genotype-dependent microbial effects in foxtail millet." Nature Communications 13, no. 1 (2022). http://dx.doi.org/10.1038/s41467-022-33238-4.

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AbstractGenetic and environmental factors collectively determine plant growth and yield. In the past 20 years, genome-wide association studies (GWAS) have been conducted on crops to decipher genetic loci that contribute to growth and yield, however, plant genotype appears to be insufficient to explain the trait variations. Here, we unravel the associations between genotypic, phenotypic, and rhizoplane microbiota variables of 827 foxtail millet cultivars by an integrated GWAS, microbiome-wide association studies (MWAS) and microbiome genome-wide association studies (mGWAS) method. We identify 2

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Klasek, Scott A., Marcus T. Brock, W. John Calder, Hilary G. Morrison, Cynthia Weinig, and Lois Maïgnien. "Spatiotemporal Heterogeneity and Intragenus Variability in Rhizobacterial Associations with Brassica rapa Growth." mSystems, May 16, 2022. http://dx.doi.org/10.1128/msystems.00060-22.

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The rhizosphere, the zone of soil surrounding plant roots, is a hot spot for microbial activity, hosting bacteria capable of promoting plant growth in ways like increasing nutrient availability or fighting plant pathogens. This microbial system is highly diverse and most bacteria are unculturable, so to identify specific bacteria associated with plant growth, we used culture-independent community DNA sequencing combined with machine learning techniques.

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Miao, Zelei, Wenwen Du, Congmei Xiao, et al. "Gut microbiota signatures of long-term and short-term plant-based dietary pattern and cardiometabolic health: a prospective cohort study." BMC Medicine 20, no. 1 (2022). http://dx.doi.org/10.1186/s12916-022-02402-4.

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Abstract Background The interplay among the plant-based dietary pattern, gut microbiota, and cardiometabolic health is still unclear, and evidence from large prospective cohorts is rare. We aimed to examine the association of long-term and short-term plant-based dietary patterns with gut microbiota and to assess the prospective association of the identified microbial features with cardiometabolic biomarkers. Methods Using a population-based prospective cohort study: the China Health and Nutrition Survey, we included 3096 participants from 15 provinces/megacities across China. We created an ove

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Maukonen, Mirkka, Kari K. Koponen, Aki S. Havulinna, et al. "Associations of plant-based foods, red and processed meat, and dairy with gut microbiome in Finnish adults." European Journal of Nutrition, May 16, 2024. http://dx.doi.org/10.1007/s00394-024-03406-x.

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Abstract Purpose Population-based studies on the associations of plant-based foods, red meat or dairy with gut microbiome are scarce. We examined whether the consumption of plant-based foods (vegetables, potatoes, fruits, cereals), red and processed meat (RPM) or dairy (fermented milk, cheese, other dairy products) are related to gut microbiome in Finnish adults. Methods We utilized data from the National FINRISK/FINDIET 2002 Study (n = 1273, aged 25–64 years, 55% women). Diet was assessed with 48-hour dietary recalls. Gut microbiome was analyzed using shallow shotgun sequencing. We applied mu

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Cecala, Jacob M., Leta Landucci, and Rachel L. Vannette. "Seasonal Assembly of Nectar Microbial Communities Across Angiosperm Plant Species: Assessing Contributions of Climate and Plant Traits." Ecology Letters 28, no. 1 (2024). https://doi.org/10.1111/ele.70045.

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ABSTRACTPlant–microbe associations are ubiquitous, but parsing contributions of dispersal, host filtering, competition and temperature on microbial community composition is challenging. Floral nectar‐inhabiting microbes, which can influence flowering plant health and pollination, offer a tractable system to disentangle community assembly processes. We inoculated a synthetic community of yeasts and bacteria into nectars of 31 plant species while excluding pollinators. We monitored weather and, after 24 h, collected and cultured communities. We found a strong signature of plant species on result

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Zuev, R., and A. Moliere. "MICROBIAL NUTRIPARAPHARMACEUTICALS IN AN INTEGRATED VEGETABLE EDIBLE RAW MATERIAL." BIOTECHNOLOGY: STATE OF THE ART AND PERSPECTIVES, 2020, 376–77. http://dx.doi.org/10.37747/2312-640x-2020-18-376-377.

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The technology for obtaining nutriparafamaceuticals by solid-phase cultivation of microbial associations from yeast and bacteria isolated from edible plant and animal products on plant food raw materials has been developed.

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Byers, Alexa-Kate, Leo M. Condron, Maureen O'Callaghan, Lauren Waller, Ian A. Dickie, and Steve A. Wakelin. "Plant species identity and plant-induced changes in soil physicochemistry – but not plant phylogeny or functional traits: shape the assembly of the root-associated soil microbiome." FEMS Microbiology Ecology, October 10, 2023. http://dx.doi.org/10.1093/femsec/fiad126.

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Abstract The root-associated soil microbiome contributes immensely to support plant health and performance against abiotic and biotic stressors. Understanding the processes that shape microbial assembly in root-associated soils is of interest in microbial ecology and plant health research. In this study, 37 plant species were grown in the same soil mixture for 10 months, whereupon the root-associated soil microbiome was assessed using amplicon sequencing. From this, the contribution of direct and indirect plant effects on microbial assembly was assessed. Plant species and plant-induced changes

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Blaustein, Ryan A., Graciela L. Lorca, Julie L. Meyer, Claudio F. Gonzalez, and Max Teplitski. "Defining the Core Citrus Leaf- and Root-Associated Microbiota: Factors Associated with Community Structure and Implications for Managing Huanglongbing (Citrus Greening) Disease." Applied and Environmental Microbiology 83, no. 11 (2017). http://dx.doi.org/10.1128/aem.00210-17.

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ABSTRACTStable associations between plants and microbes are critical to promoting host health and productivity. The objective of this work was to test the hypothesis that restructuring of the core microbiota may be associated with the progression of huanglongbing (HLB), the devastating citrus disease caused byLiberibacter asiaticus,Liberibacter americanus, andLiberibacter africanus. The microbial communities of leaves (n= 94) and roots (n= 79) from citrus trees that varied by HLB symptom severity, cultivar, location, and season/time were characterized with Illumina sequencing of 16S rRNA genes

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Duan, Pengpeng, Ruitong Fu, Andrew T. Nottingham, et al. "Tree species diversity increases soil microbial carbon use efficiency in a subtropical forest." Global Change Biology, October 19, 2023. http://dx.doi.org/10.1111/gcb.16971.

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AbstractPlant communities strongly influence soil microbial communities and, in turn, soil carbon (C) cycling. Microbial carbon use efficiency (CUE) is an important parameter for predicting soil C accumulation, yet how plant and soil microbial community traits influence microbial CUE remains poorly understood. Here, we determined how soil microbial CUE is influenced by plant and soil microbial community traits, by studying a natural gradient of plant species diversity in a subtropical forest. Our results showed that microbial CUE increased with increasing tree species diversity, suggesting a c

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