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Journal articles on the topic 'Molecular typing'

Author: Grafiati

Published: 4 June 2021

Last updated: 25 July 2025

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1

Müller, F. M. C., A. Lischewski, D. Harmsen, and J. Hacker. "Standardized molecular typing." Mycoses 42 (December 1999): 69–72. http://dx.doi.org/10.1111/j.1439-0507.1999.tb00016.x.

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2

de Valk, H. A., C. H. W. Klaassen, and J. F. G. M. Meis. "Molecular typing ofAspergillusspecies." Mycoses 51, no. 6 (2008): 463–76. http://dx.doi.org/10.1111/j.1439-0507.2008.01538.x.

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3

Wu, Fann, and Phyllis Della-Latta. "Molecular typing strategies." Seminars in Perinatology 26, no. 5 (2002): 357–66. http://dx.doi.org/10.1053/sper.2002.36269.

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4

Milford, Edgar L. "HLA molecular typing." Current Opinion in Nephrology and Hypertension 2, no. 6 (1993): 892–97. http://dx.doi.org/10.1097/00041552-199311000-00006.

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5

Kobayashi, N., K. Taniguchi, K. Kojima, et al. "Analysis of methicillin-resistant and methicillin-susceptibleStaphylococcus aureusby a molecular typing method based on coagulase gene polymorphisms." Epidemiology and Infection 115, no. 3 (1995): 419–26. http://dx.doi.org/10.1017/s095026880005857x.

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SummaryA molecular typing method forStaphylococcus aureusbased on coagulase gene polymorphisms (coagulase gene typing) was evaluated by examining a total of 240 isolates which comprised 210 methicillin-resistantS. aureus(MRSA) and 30 methicillin-susceptibleS. aureus(MSSA) collected from a single hospital. ByAlulrestriction enzyme digestion of the PCR-amplified 3′-end region of the coagulase gene including 81-bp repeated units, the MRSA and MSSA isolates examined were divided into 6 and 12 restriction fragment length polymorphism (RFLP) patterns, respectively, whereas five patterns were commonl

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6

Park, Eun-Hee, Mi-Hee Kim, Joung-A. Kim, et al. "Molecular Typing of Legionella pneumophila Isolated in Busan, Using PFGE." Journal of Life Science 15, no. 2 (2005): 161–68. http://dx.doi.org/10.5352/jls.2005.15.2.161.

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7

Pitt, T. L. "Molecular typing in practice." Journal of Hospital Infection 43 (December 1999): S85—S88. http://dx.doi.org/10.1016/s0195-6701(99)90069-5.

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8

Jeršek, Barbara. "Molecular typing ofListeria Monocytogenes." Acta Microbiologica et Immunologica Hungarica 49, no. 1 (2002): 81–92. http://dx.doi.org/10.1556/amicr.49.2002.1.8.

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9

Arif, Sahand. "MOLECULAR TYPING OF MRSA ISOLATED FROM SULAIMANIYAH CITY HOSPITAL USING DIFFERENT MOLECULAR TECHNIQUES." Journal of Sulaimani Medical College 14, no. 1 (2024): 73–87. https://doi.org/10.17656/jsmc.10453.

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Background Staphylococcus aureus causes a variety of human illnesses, methicillin-resistant S. aureus is the deadliest and most dangerous in clinical settings. Objectives Genotype detection of MRSA using Staphylococcal Cassette vChromosome mec (SCCmec) and Enterobacterial Repetitive Intergenic Consensus Polymerase Chain Reaction (ERIC-PCR) techniques. Methods Fifty-two isolates were taken from Burn-and-Plastic Surgery Hospital/Emergency. The samples were collected from different sources from July to December 2021. All samples were cultivated and identifi ed as S.aureus with coa and nuc genes.

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10

Gerlach, John A. "Human Lymphocyte Antigen Molecular Typing." Archives of Pathology & Laboratory Medicine 126, no. 3 (2002): 281–84. http://dx.doi.org/10.5858/2002-126-0281-hlamt.

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Abstract The human lymphocyte antigen (HLA) typing community was one of the early groups to adopt molecular testing. This action was borne out of the need to identify the many alleles of the highly polymorphic HLA system. Early paradigms used restriction fragment length polymorphism regimes, but the polymerase chain reaction method of amplification quickly replaced that less-than-discriminating choice. Methods currently in use for HLA typing, with commercial kits available, are sequence-specific oligonucleotide probe (both dot blot and the reverse blot dot), sequence-specific primer amplificat

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11

Pfaller, Michael A. "Molecular Epidemiology in the Care of Patients." Archives of Pathology & Laboratory Medicine 123, no. 11 (1999): 1007–10. http://dx.doi.org/10.5858/1999-123-1007-meitco.

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Abstract Several different epidemiologic typing methods have been applied in studies of microbial pathogens. These methods include the more traditional nonmolecular approaches as well as the more sophisticated molecular typing methods. Application of traditional epidemiologic typing methods, such as antibiogram, serotyping, biotyping, and phage typing, have occasionally been useful in describing the epidemiology of infectious diseases. However, these methods have generally been considered to be too variable, labor intensive, and slow to be of practical value in epidemiologic investigations. In

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12

Platonov, M. E., V. V. Evseeva, S. V. Dentovskaya, and A. P. Anisimov. "Molecular typing of Yersinia pestis." Molecular Genetics, Microbiology and Virology 28, no. 2 (2013): 41–51. http://dx.doi.org/10.3103/s0891416813020067.

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13

Svetoch, T. E., S. V. Dentovskaya, and E. A. Svetoch. "Molecular typing of Shigella strains." Molecular Genetics, Microbiology and Virology 32, no. 1 (2017): 6–11. http://dx.doi.org/10.3103/s0891416817010104.

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14

Eremeeva, M. E., M. M. Sturgeon, J. K. Willard, S. E. Karpathy, A. Madan, and G. A. Dasch. "Molecular typing of Rickettsia akari." Russian Journal of Infection and Immunity 10, no. 3 (2020): 497–505. http://dx.doi.org/10.15789/2220-7619-mto-1295.

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Rickettsia akari, an obligately intracellular bacterium, is the causative agent of the cosmopolitan urban disease rickettsialpox. R. akari is an atypical representative of spotted fever group rickettsiae (SFG) as it is associated with rodent mites rather than ticks or fleas; however, only limited information is available about the degree of genetic variability found among isolates of R. akari. We examined 13 isolates of R. akari from humans, rodents and mites in the USA, the former Soviet Union, and the former Yugoslavia made between 1946 and 2003 for diversity in their tandem repeat regions (

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15

Svetoch, T. E., S. V. Dentovskaya, and E. A. Svetoch. "Molecular typing of Shigella strains." Molecular Genetics Microbiology and Virology (Russian version) 35, no. 1 (2017): 7. http://dx.doi.org/10.18821/0208-0613-2017-35-1-7-11.

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16

McEwen, J. G., J. W. Taylor, D. Carter, et al. "Molecular typing of pathogenic fungi." Medical Mycology 38, no. 1 (2000): 189–97. http://dx.doi.org/10.1080/mmy.38.1.189.197.

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17

McEwen, J. G., J. W. Taylor, D. Carter, et al. "Molecular typing of pathogenic fungi." Medical Mycology 38, s1 (2000): 189–97. http://dx.doi.org/10.1080/mmy.38.s1.189.197.

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18

Windsor, J. J., C. G. Clark, and L. Macfarlane. "Molecular typing of Dientamoeba fragilis." British Journal of Biomedical Science 61, no. 3 (2004): 153–55. http://dx.doi.org/10.1080/09674845.2004.11978138.

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19

Oberste, M. Steven, and Mark A. Pallansch. "Enterovirus molecular detection and typing." Reviews in Medical Microbiology 16, no. 4 (2005): 163–71. http://dx.doi.org/10.1097/01.revmedmi.0000184741.90926.35.

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20

Lischewski, A., D. Harmsen, J. Hacker, and J. Morschhäuser. "Standardized molecular typing ofCandida albicansstrains." Mycoses 40, no. 9-10 (1997): 369–72. http://dx.doi.org/10.1111/j.1439-0507.1997.tb00252.x.

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21

Mechergui, Arij, Wafa Achour, Dario Giorgini, Rekaya Baaboura, Muhamed-Kheir Taha, and Assia Ben Hassen. "Molecular typing ofNeisseria perflavaclinical isolates." APMIS 121, no. 9 (2012): 843–47. http://dx.doi.org/10.1111/apm.12042.

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22

Kerouanton, A., A. Brisabois, J. Grout, and B. Picard. "Molecular epidemiological tools forSalmonellaDublin typing." FEMS Immunology & Medical Microbiology 14, no. 1 (1996): 25–29. http://dx.doi.org/10.1111/j.1574-695x.1996.tb00263.x.

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23

Fanoy, E., and A. De Neeling. "Molecular Typing: Use with Care." Public Health Ethics 5, no. 3 (2012): 313–14. http://dx.doi.org/10.1093/phe/phs029.

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24

Tian, Hongqing, Zhen Li, Zhongwei Li, et al. "Molecular Typing of Treponema pallidum." Sexually Transmitted Diseases 41, no. 9 (2014): 551. http://dx.doi.org/10.1097/olq.0000000000000155.

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25

&NA;. "Molecular Typing of Treponema pallidum." Sexually Transmitted Diseases 42, no. 2 (2015): 107. http://dx.doi.org/10.1097/olq.0000000000000239.

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26

Bonora, Stefano, Giovanni Di Perri, Giuseppino Loi, Stefania Zanetti, and Ercole Concia. "Molecular typing of Mycobacterium tuberculosis." Lancet 353, no. 9162 (1999): 1442. http://dx.doi.org/10.1016/s0140-6736(05)75966-3.

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27

Poh, Chit Laa. "Molecular typing of Neisseria gonorrhoeae." Reviews in Medical Microbiology 9, no. 1 (1998): 1–8. http://dx.doi.org/10.1097/00013542-199801000-00001.

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28

Meyer, Wieland, Alexandra Castañeda, Stuart Jackson, Matthew Huynh, and Elizabeth Castañeda. "Molecular Typing of IberoAmericanCryptococcus neoformansIsolates." Emerging Infectious Diseases 9, no. 2 (2003): 189–95. http://dx.doi.org/10.3201/eid0902.020246.

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29

MURASE, Toshiyuki, Rieko SUZUKI, and Shiro YAMAI. "Molecular Typing of Streptococcus pyogenes." Nippon Saikingaku Zasshi 54, no. 3 (1999): 617–29. http://dx.doi.org/10.3412/jsb.54.617.

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30

Birch, M., M. J. Anderson, and D. W. Denning. "Molecular typing of Aspergillus species." Journal of Hospital Infection 30 (June 1995): 339–51. http://dx.doi.org/10.1016/0195-6701(95)90037-3.

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31

SIDORENKO, S. V., V. S. SOLOMKA, O. S. KOZhUShNAYa, et al. "Methods for typing std pathogens (N. Gonorrhoeae, C. Trachomatis, T. Pallidum)." Vestnik dermatologii i venerologii 86, no. 3 (2010): 12–21. http://dx.doi.org/10.25208/vdv781.

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Phenotypic methods were initially used for bacterial typing yet they have a number of drawbacks limiting their use. Methods of molecular and genetic typing have become wide-spread today. Among these methods, bacterial typing based on multilocus sequence typing (Multilocus Sequence Typing - MLST) has been developing at the fastest rate. However, schemes of molecular and genetic typing of STD pathogens as compared to other bacteria are insufficiently developed, which considerably complicates the planning of measures aimed at the reduction of their spread.

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32

FARBER, J. M. "An Introduction to the Hows and Whys of Molecular Typing†." Journal of Food Protection 59, no. 10 (1996): 1091–101. http://dx.doi.org/10.4315/0362-028x-59.10.1091.

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Until recently, the relatedness of bacterial isolates has been determined solely by testing for one or several phenotypic markers, using methods such as serotyping, phage typing, biotyping, antibiotic susceptibility testing, and bacteriocin typing. However, there are problems in the use of many of these phenotype-based methods. For example, phage and bacteriocin typing systems are not available for all bacterial species and serotyping can be labor-intensive and costly. In addition, phenotypic markers may not be stably expressed under certain environmental or culture conditions. In contrast, so

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33

Kidd, Sarah E., Li Min Ling, Wieland Meyer, C. Orla Morrissey, Sharon C. A. Chen, and Monica A. Slavin. "Molecular Epidemiology of Invasive Aspergillosis: Lessons Learned from an Outbreak Investigation in an Australian Hematology Unit." Infection Control & Hospital Epidemiology 30, no. 12 (2009): 1223–26. http://dx.doi.org/10.1086/648452.

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Suspected nosocomial Aspergillus fumigatus infections in an Australian hematology unit were investigated by molecular typing of clinical and environmental isolates using polymerase chain reaction fingerprinting, CSP typing, and multilocus microsatellite typing. Only multilocus microsatellite typing revealed that all isolates were genetically distinct. The selection of an appropriate typing method is essential for effective outbreak investigations.

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34

Nørrung, B., and P. Gerner-Smith. "Comparison of multilocus enzyme electrophoresis (MEE), ribotyping, restriction enzyme analysis (REA) and phage typing for typing ofListeria monocytogenes." Epidemiology and Infection 111, no. 1 (1993): 71–79. http://dx.doi.org/10.1017/s0950268800056697.

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SummaryThe discriminatory power of four methods for typing ofListeria monocytogeneswas compared. The four methods were multilocus enzyme electrophoresis (MEE), ribotyping, restriction enzyme analysis (REA), and a newly developed Danish phage typing system. Ninety-nine human clinical, food and slaughterhouse isolates ofListeria monocytogeneswere typed by each method. The most discriminatory single typing method was phage typing with an overall discriminatory index (DI) of 0·88 followed by REA, MEE and ribotyping with DI-values at 0·87, 0·83 and 0·79 respectively. Considering strains from each o

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35

Barg, Neil L. "An Introduction to Molecular Hospital Epidemiology." Infection Control & Hospital Epidemiology 14, no. 7 (1993): 395–96. http://dx.doi.org/10.1086/646768.

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One of the primary goals of the hospital epidemiologist is the identification and characterization of nosocomial outbreaks. Outbreaks usually are identified by the recovery of a unique strain from a cluster of patients infected with a nosocomially acquired pathogen. Until recently, the microbiologic tools available to any hospital epidemiologist permitted identification of novel strains by speciation and antibiogram. Thus, most outbreak descriptions consisted of the identification of an unusual species or the appearance of a new antibiotic resistance phenotype in a recognized nosocomial pathog

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36

Touati, A., Y. Blouin, P. Sirand-Pugnet, et al. "Molecular Epidemiology of Mycoplasma pneumoniae: Genotyping Using Single Nucleotide Polymorphisms and SNaPshot Technology." Journal of Clinical Microbiology 53, no. 10 (2015): 3182–94. http://dx.doi.org/10.1128/jcm.01156-15.

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Molecular typing ofMycoplasma pneumoniaeis an important tool for identifying grouped cases and investigating outbreaks. In the present study, we developed a new genotyping method based on single nucleotide polymorphisms (SNPs) selected from the whole-genome sequencing of eightM. pneumoniaestrains, using the SNaPshot minisequencing assay. Eight SNPs, localized in housekeeping genes, predicted lipoproteins, and adhesin P1 genes were selected for genotyping. These SNPs were evaluated on 140M. pneumoniaeclinical isolates previously genotyped by multilocus variable-number tandem-repeat analysis (ML

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37

Muir, Peter, Ulrike Kämmerer, Klaus Korn, et al. "Molecular Typing of Enteroviruses: Current Status and Future Requirements." Clinical Microbiology Reviews 11, no. 1 (1998): 202–27. http://dx.doi.org/10.1128/cmr.11.1.202.

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Human enteroviruses have traditionally been typed according to neutralization serotype. This procedure is limited by the difficulty in culturing some enteroviruses, the availability of antisera for serotyping, and the cost and technical complexity of serotyping procedures. Furthermore, the impact of information derived from enterovirus serotyping is generally perceived to be low. Enteroviruses are now increasingly being detected by PCR rather than by culture. Classical typing methods will therefore no longer be possible in most instances. An alternative means of enterovirus typing, employing P

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38

Roellig, Dawn M., Emily L. Brown, Christian Barnabé, Michel Tibayrenc, Frank J. Steurer, and Michael J. Yabsley. "Molecular Typing ofTrypanosoma cruziIsolates, United States." Emerging Infectious Diseases 14, no. 7 (2008): 1123–25. http://dx.doi.org/10.3201/eid1407.080175.

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39

Shokoohizadeh, Leili. "Molecular Methods for Bacterial Strain Typing." Medical Laboratory Journal 10, no. 2 (2016): 1–7. http://dx.doi.org/10.18869/acadpub.mlj.10.2.1.

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40

YAKUBU, DAVIS E., FARIBORZ J. R. ABADI, and T. HUGH PENNINGTON. "Molecular typing methods for Neisseria meningitidis." Journal of Medical Microbiology 48, no. 12 (1999): 1055–64. http://dx.doi.org/10.1099/00222615-48-12-1055.

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41

Williamson, L. M., D. Bruce, A. Lubenko, H. J. Chana, and W. H. Ouwehand. "Molecular biology for platelet alloantigen typing." Transfusion Medicine 2, no. 4 (1992): 255–64. http://dx.doi.org/10.1111/j.1365-3148.1992.tb00167.x.

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42

Grossman, Tamar, Shifra Ken-Dror, Elsa Pavlotzky, et al. "Molecular typing of Cryptosporidium in Israel." PLOS ONE 14, no. 9 (2019): e0219977. http://dx.doi.org/10.1371/journal.pone.0219977.

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43

Bubela, T., and S. Yanow. "Molecular Typing Technology: a Legal Perspective." Public Health Ethics 5, no. 3 (2012): 317–20. http://dx.doi.org/10.1093/phe/phs030.

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44

Hänni, Catherine, Agnès Begue, Vincent Laudet, et al. "Molecular typing of neolithic human bones." Journal of Archaeological Science 22, no. 5 (1995): 649–58. http://dx.doi.org/10.1016/s0305-4403(95)80150-2.

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45

Jackson, K., R. Edwards, D. E. Leslie, and J. Hayman. "Molecular method for typing Mycobacterium ulcerans." Journal of clinical microbiology 33, no. 9 (1995): 2250–53. http://dx.doi.org/10.1128/jcm.33.9.2250-2253.1995.

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46

Guérin-Faublée, Véronique, Dominique Decoret, Angeli Kodjo, et al. "Molecular typing of actinomyces pyogenes isolates." Zentralblatt für Bakteriologie 281, no. 2 (1994): 174–82. http://dx.doi.org/10.1016/s0934-8840(11)80567-0.

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47

Li, A. X., L. Mao, S. Wang, et al. "Bead microarray for HLA molecular typing." Human Immunology 63, no. 10 (2002): S9. http://dx.doi.org/10.1016/s0198-8859(02)00480-9.

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48

Helmuth, R., and A. Schroeter. "Molecular typing methods for S. enteridis." International Journal of Food Microbiology 21, no. 1-2 (1994): 69–77. http://dx.doi.org/10.1016/0168-1605(94)90201-1.

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49

Edlund, Hanna, and Marie Allen. "SNP typing using molecular inversion probes." Forensic Science International: Genetics Supplement Series 1, no. 1 (2008): 473–75. http://dx.doi.org/10.1016/j.fsigss.2007.11.014.

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50

Bronson, Sandra Rosen. "Tissue typing in the molecular era." Clinical Immunology Newsletter 13, no. 12 (1993): 153. http://dx.doi.org/10.1016/0197-1859(93)90001-z.

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