Relevant bibliographies by topics / Multi-organisms interactions

Contents

  1. Journal articles
  2. Dissertations / Theses
  3. Book chapters
  4. Conference papers
  5. Reports

Academic literature on the topic 'Multi-organisms interactions'

Author: Grafiati
Published: 4 May 2024
Last updated: 31 July 2025

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Journal articles on the topic "Multi-organisms interactions"

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Sun, Xuelong, Cheng Hu, Tian Liu, Shigang Yue, Jigen Peng, and Qinbing Fu. "Translating Virtual Prey-Predator Interaction to Real-World Robotic Environments: Enabling Multimodal Sensing and Evolutionary Dynamics." Biomimetics 8, no. 8 (2023): 580. http://dx.doi.org/10.3390/biomimetics8080580.

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Prey-predator interactions play a pivotal role in elucidating the evolution and adaptation of various organism’s traits. Numerous approaches have been employed to study the dynamics of prey-predator interaction systems, with agent-based methodologies gaining popularity. However, existing agent-based models are limited in their ability to handle multi-modal interactions, which are believed to be crucial for understanding living organisms. Conversely, prevailing prey-predator integration studies often rely on mathematical models and computer simulations, neglecting real-world constraints and noi
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Henriques, Gil J. B., Simon van Vliet, and Michael Doebeli. "Multilevel selection favors fragmentation modes that maintain cooperative interactions in multispecies communities." PLOS Computational Biology 17, no. 9 (2021): e1008896. http://dx.doi.org/10.1371/journal.pcbi.1008896.

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Reproduction is one of the requirements for evolution and a defining feature of life. Yet, across the tree of life, organisms reproduce in many different ways. Groups of cells (e.g., multicellular organisms, colonial microbes, or multispecies biofilms) divide by releasing propagules that can be single-celled or multicellular. What conditions determine the number and size of reproductive propagules? In multicellular organisms, existing theory suggests that single-cell propagules prevent the accumulation of deleterious mutations (e.g., cheaters). However, groups of cells, such as biofilms, somet
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Leggett, Helen C., Sam P. Brown, and Sarah E. Reece. "War and peace: social interactions in infections." Philosophical Transactions of the Royal Society B: Biological Sciences 369, no. 1642 (2014): 20130365. http://dx.doi.org/10.1098/rstb.2013.0365.

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One of the most striking facts about parasites and microbial pathogens that has emerged in the fields of social evolution and disease ecology in the past few decades is that these simple organisms have complex social lives, indulging in a variety of cooperative, communicative and coordinated behaviours. These organisms have provided elegant experimental tests of the importance of relatedness, kin discrimination, cooperation and competition, in driving the evolution of social strategies. Here, we briefly review the social behaviours of parasites and microbial pathogens, including their contribu
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Golombek, Diego A., Ivana L. Bussi, and Patricia V. Agostino. "Minutes, days and years: molecular interactions among different scales of biological timing." Philosophical Transactions of the Royal Society B: Biological Sciences 369, no. 1637 (2014): 20120465. http://dx.doi.org/10.1098/rstb.2012.0465.

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Biological clocks are genetically encoded oscillators that allow organisms to keep track of their environment. Among them, the circadian system is a highly conserved timing structure that regulates several physiological, metabolic and behavioural functions with periods close to 24 h. Time is also crucial for everyday activities that involve conscious time estimation. Timing behaviour in the second-to-minutes range, known as interval timing, involves the interaction of cortico-striatal circuits. In this review, we summarize current findings on the neurobiological basis of the circadian system,
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Kaitaniemi, Pekka, Annette Scheiner, Tero Klemola, and Kai Ruohomäki. "Multi-objective optimization shapes ecological variation." Proceedings of the Royal Society B: Biological Sciences 279, no. 1729 (2011): 820–25. http://dx.doi.org/10.1098/rspb.2011.1371.

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Ecological systems contain a huge amount of quantitative variation between and within species and locations, which makes it difficult to obtain unambiguous verification of theoretical predictions. Ordinary experiments consider just a few explanatory factors and are prone to providing oversimplified answers because they ignore the complexity of the factors that underlie variation. We used multi-objective optimization (MO) for a mechanistic analysis of the potential ecological and evolutionary causes and consequences of variation in the life-history traits of a species of moth. Optimal life-hist
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Cairns, Johannes, Matti Jalasvuori, Ville Ojala, Michael Brockhurst, and Teppo Hiltunen. "Conjugation is necessary for a bacterial plasmid to survive under protozoan predation." Biology Letters 12, no. 2 (2016): 20150953. http://dx.doi.org/10.1098/rsbl.2015.0953.

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Horizontal gene transfer by conjugative plasmids plays a critical role in the evolution of antibiotic resistance. Interactions between bacteria and other organisms can affect the persistence and spread of conjugative plasmids. Here we show that protozoan predation increased the persistence and spread of the antibiotic resistance plasmid RP4 in populations of the opportunist bacterial pathogen Serratia marcescens . A conjugation-defective mutant plasmid was unable to survive under predation, suggesting that conjugative transfer is required for plasmid persistence under the realistic condition o
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Lyu, Yanfen, Ting Xiong, Shuaibo Shi, et al. "Prediction of the Trimer Protein Interface Residue Pair by CNN-GRU Model Based on Multi-Feature Map." Nanomaterials 15, no. 3 (2025): 188. https://doi.org/10.3390/nano15030188.

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Most life activities of organisms are realized through protein–protein interactions, and these interactions are mainly achieved through residue–residue contact between monomer proteins. Consequently, studying residue–residue contact at the protein interaction interface can contribute to a deeper understanding of the protein–protein interaction mechanism. In this paper, we focus on the research of the trimer protein interface residue pair. Firstly, we utilize the amino acid k-interval product factor descriptor () to integrate the positional information and physicochemical properties of amino ac
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Prayogo, Doddy, Min-Yuan Cheng, Yu-Wei Wu, et al. "A Novel Hybrid Metaheuristic Algorithm for Optimization of Construction Management Site Layout Planning." Algorithms 13, no. 5 (2020): 117. http://dx.doi.org/10.3390/a13050117.

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Symbiotic organisms search (SOS) is a promising metaheuristic algorithm that has been studied recently by numerous researchers due to its capability to solve various hard and complex optimization problems. SOS is a powerful optimization technique that mimics the simulation of the typical symbiotic interactions among organisms in an ecosystem. This study presents a new SOS-based hybrid algorithm for solving the challenging construction site layout planning (CSLP) discrete problems. A new algorithm called the hybrid symbiotic organisms search with local operators (HSOS-LO) represents a combinati
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Lan, Qiuhong, Zhongtuan Zheng, Zhen Tang, Xuehua Qiu, and Zhixiang Yin. "Protein-protein interaction prediction using bidirectional GRUs with explicit ensemble." PLOS One 20, no. 7 (2025): e0326960. https://doi.org/10.1371/journal.pone.0326960.

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Protein-protein interactions is essential for cellular processes in all organisms. The accurate in-silico identification of these interactions is a significant area of research in biology-related fields, which is crucial for protein function prediction and drug design. Protein sequence data serves as the primary source for computational protein prediction. However, existing models for predicting protein-protein interactions based on sequence information typically consider only a limited set of physicochemical properties of amino acids. Consequently, they fail to comprehensively characterize pr
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Araújo, Cristiano V. M., Abdelmourhit Laissaoui, Daniel C. V. R. Silva, et al. "Not Only Toxic but Repellent: What Can Organisms’ Responses Tell Us about Contamination and What Are the Ecological Consequences When They Flee from an Environment?" Toxics 8, no. 4 (2020): 118. http://dx.doi.org/10.3390/toxics8040118.

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The ability of aquatic organisms to sense the surrounding environment chemically and interpret such signals correctly is crucial for their ecological niche and survival. Although it is an oversimplification of the ecological interactions, we could consider that a significant part of the decisions taken by organisms are, to some extent, chemically driven. Accordingly, chemical contamination might interfere in the way organisms behave and interact with the environment. Just as any environmental factor, contamination can make a habitat less attractive or even unsuitable to accommodate life, condi
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Dissertations / Theses on the topic "Multi-organisms interactions"

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Guillonneau, Richard. "Diversité des interactions microbiennes au sein de l'environnement marin ˸ : De biofilms multi-spécifiques à multi-organismes." Electronic Thesis or Diss., Toulon, 2018. http://www.theses.fr/2018TOUL0009.

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La formation de biofilm multi-organismes est rarement étudiée en particulier avec des organismes marins. Ce travail a d’abord mis en évidence une hétérogénéité des capacités de formation du biofilm et de la matrice de bactéries isolées de Méditerranée. L’étude de biofilms multi-espèces a permis de révéler des effets antagonistes et bénéfiques de certaines souches sur le développement du biofilm de leurs partenaires. Les interactions entre amibes et bactéries marines inoculées à un faible ratio ont ensuite montré que toutes les souches testées ont été phagocytées par Acanthamoeba castellanii. C
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Shrivastava, Gitika. "Production and Roles of Volatile Secondary Metabolites in Interactions of the Host Plant Tomato (Solanum lycopersicum L.) with Other Organisms at Multi-Trophic Levels." 2011. http://trace.tennessee.edu/utk_graddiss/1226.

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Tomato (Solanum lycopersicum L.) produces an array of volatile secondary metabolites that act as constitutive and induced defenses against a variety of insect pests and diseases. We studied the effect of beneficial microorganisms, an arbuscular mycorrhiza fungus (AM), Glomus intraradices, an entomopathogenic fungus (Bb), Beauveria bassiana and a combination of both (AM+Bb), as well as, pests, such as rootknot nematode (RKN) (Meloidogyne incognita) and beet armyworm (BAW) (Spodoptera exiguae H.) on the production of volatile compounds in the leaves and roots of tomato. Benzyl alcohol, 3-hexenoi
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Book chapters on the topic "Multi-organisms interactions"

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Ranimol, G., C. B. Devipriya, and Swetha Sunkar. "Docking and Molecular Dynamics Simulation Studies for the Evaluation of Laccase Mediated Biodegradation of Triclosan." In Proceedings of the Conference BioSangam 2022: Emerging Trends in Biotechnology (BIOSANGAM 2022). Atlantis Press International BV, 2022. http://dx.doi.org/10.2991/978-94-6463-020-6_20.

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AbstractTriclosan (TCA) is an antibacterial and antimicrobial compound that is incorporated into toothpaste, soap, and liquid dishwasher. Continuous TCA exposure may contribute to the emergence of antibiotic-resistant bacteria in the microbiome. Triclosan also reacts to form dioxins, which bioaccumulate and are toxic to aquatic organisms, impedes the thyroid hormone metabolism of the human body. Laccases are multi copper-containing enzymes that can degrade the aromatic compounds and thus reduce their toxicity. To effectively degrade the compound, it is essential to understand the molecular fun
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Selleck, Scott B., and Sally E. Stringer. "Extracellular Matrix and Signaling during Development." In Inborn Errors Of Development. Oxford University PressNew York, NY, 2008. http://dx.doi.org/10.1093/oso/9780195306910.003.0163.

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Abstract There was a time when the biology of the extracellular matrix was considered quite separately from study of signaling or morphogenesis. This was even reMected in the terminology of the 2eld, where “ground substance” was used to refer to the extracellular matrix. “Ground substance” certainly does not evoke images of dynamic pro- cesses that involve interactions between cells and their environment. We now know that it is impossible to understand the biology of multi- cellular organisms without appreciating that cells create the extracellular matrix that surrounds them and that the matri
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Ghosh Biswas, R., A. Jenne, M. Bastawrous, L. Labine, R. Soong, and A. Simpson. "Comprehensive Multiphase NMR: Natural Samples in Their Natural State." In The Environment in a Magnet. Royal Society of Chemistry, 2024. http://dx.doi.org/10.1039/bk9781837671250-00092.

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In their native states, most natural samples exist as complex heterogeneous mixtures, with conformation, associations between phases, and transfer across phases being critical to biological function and environmental reactivity. Often analytical techniques to observe natural samples tend to be destructive to the sample itself and/or can only monitor individual phases (solution or solid). Comprehensive multiphase NMR (CMP-NMR) is a non-invasive technique capable of monitoring all phases (solution, gel, and solid) and their interactions such as binding and phase transformation in intact samples
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Sugil, A. Jasmine, and Dr K. Merriliance. "BIOINFORMATICS:PROTEIN BIOLOGY CONCEPTS ON ITS STABILITY AND APPLICATIONS." In Futuristic Trends in Computing Technologies and Data Sciences Volume 3 Book 7. Iterative International Publishers, Selfypage Developers Pvt Ltd, 2024. http://dx.doi.org/10.58532/v3bkct7p1ch2.

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This chapter focuses on the interdisciplinary area, bioinformatics. It introduces the field of bioinformatics as well as adescription of bioinformatics methodologies, its implications in protein stability and how they are used in the study of proteins. For any living thing to operate properly, proteins and amino acids are a crucial biomolecule. Experimental study on protein stability prediction is cumbersome and in accurate. Hence drug design for protein-based diseases has look tedious. In this context, Bio informatics is playing a critical role in predicting the thermodynamics stability of pr
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Ahmed Rather, Gulzar, Saqib Hassan, Surajit Pal, Mohd Hashim Khan, Heshu Sulaiman Rahman, and Johra Khan. "Antimicrobial Efficacy of Biogenic Silver and Zinc Nanocrystals/Nanoparticles to Combat the Drug Resistance in Human Pathogens." In Nanocrystals [Working Title]. IntechOpen, 2021. http://dx.doi.org/10.5772/intechopen.99200.

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The emergence of biogenic nanomaterials as novel antimicrobials introduces a new paradigm in human health care. Based on the recent reports of the World Health Organization, infectious diseases pose one of the greatest health challenges. Increased multi-drug resistance prevalence among human pathogens, due to the inefficiency of commercially available antimicrobial drugs in the market is a great threat to humans. The poor solubility, stability and side effects of the antibacterial therapy prompted the researchers to explore new innovative strategies for developing new antimicrobials. Recently,
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Conference papers on the topic "Multi-organisms interactions"

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Poursina, Mohammad, Kishor Bhalerao, and Kurt Anderson. "Divide-and-Conquer Based Adaptive Coarse Grained Simulation of RNA." In ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology. ASMEDC, 2010. http://dx.doi.org/10.1115/nemb2010-13123.

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Molecular modeling has gained increasing importance in recent years for predicting important structural properties of large biomolecular systems such as RNA which play a critical role in various biological processes. Given the complexity of biopolymers and their interactions within living organisms, efficient and adaptive multi-scale modeling approaches are necessary if one is to reasonably perform computational studies of interest. These studies nominally involve multiple important physical phenomena occurring at different spatial and temporal scales. These systems are typically characterized
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Camiz, Alessandro. "Diachronic transformations of urban routes for the theory of attractors." In 24th ISUF 2017 - City and Territory in the Globalization Age. Universitat Politècnica València, 2017. http://dx.doi.org/10.4995/isuf2017.2017.5639.

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Alessandro Camiz ¹ ¹ Department of Architecture, Girne American University, Cyprus, Association for Historical Dialogue and Research, Home for Cooperation (H4C), 28 Marcou Dracou Street, Nicosia, Cyprus, 1102. E-mail: alessandrocamiz@gau.edu.tr Keywords (3-5): urban tissues, urban morphology, urban routes, theory, history Conference topics and scale: Tools of analysis in urban morphology Recent urban morphology studies consider urban tissues as living organisms changing in time (Strappa, Carlotti, Camiz, 2016), following this assumption the theory should examine more analytically what Muratori
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Reports on the topic "Multi-organisms interactions"

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Ficht, Thomas, Gary Splitter, Menachem Banai, and Menachem Davidson. Characterization of B. Melinensis REV 1 Attenuated Mutants. United States Department of Agriculture, 2000. http://dx.doi.org/10.32747/2000.7580667.bard.

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Brucella Mutagenesis (TAMU) The working hypothesis for this study was that survival of Brucella vaccines was directly related to their persistence in the host. This premise is based on previously published work detailing the survival of the currently employed vaccine strains S19 and Rev 1. The approach employed signature-tagged mutagenesis to construct mutants interrupted in individual genes, and the mouse model to identify mutants with attenuated virulence/survival. Intracellular survival in macrophages is the key to both reproductive disease in ruminants and reticuloendothelial disease obser
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