Academic literature on the topic 'N-end rule like pathway'

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Journal articles on the topic "N-end rule like pathway"

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Kwon, Yong Tae, Zanxian Xia, Ilia V. Davydov, Stewart H. Lecker та Alexander Varshavsky. "Construction and Analysis of Mouse Strains Lacking the Ubiquitin Ligase UBR1 (E3α) of the N-End Rule Pathway". Molecular and Cellular Biology 21, № 23 (2001): 8007–21. http://dx.doi.org/10.1128/mcb.21.23.8007-8021.2001.

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ABSTRACT The N-end rule relates the in vivo half-life of a protein to the identity of its N-terminal residue. In the yeast Saccharomyces cerevisiae, the UBR1-encoded ubiquitin ligase (E3) of the N-end rule pathway mediates the targeting of substrate proteins in part through binding to their destabilizing N-terminal residues. The functions of the yeast N-end rule pathway include fidelity of chromosome segregation and the regulation of peptide import. Our previous work described the cloning of cDNA and a gene encoding the 200-kDa mouse UBR1 (E3α). Here we show that mouse UBR1, in the presence of
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Tasaki, Takafumi, Lubbertus C. F. Mulder, Akihiro Iwamatsu, et al. "A Family of Mammalian E3 Ubiquitin Ligases That Contain the UBR Box Motif and Recognize N-Degrons." Molecular and Cellular Biology 25, no. 16 (2005): 7120–36. http://dx.doi.org/10.1128/mcb.25.16.7120-7136.2005.

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ABSTRACT A subset of proteins targeted by the N-end rule pathway bear degradation signals called N-degrons, whose determinants include destabilizing N-terminal residues. Our previous work identified mouse UBR1 and UBR2 as E3 ubiquitin ligases that recognize N-degrons. Such E3s are called N-recognins. We report here that while double-mutant UBR1 −/− UBR2 −/− mice die as early embryos, the rescued UBR1 −/− UBR2 −/− fibroblasts still retain the N-end rule pathway, albeit of lower activity than that of wild-type fibroblasts. An affinity assay for proteins that bind to destabilizing N-terminal resi
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Xie, Youming, and Alexander Varshavsky. "The N-end rule pathway is required for import of histidine in yeast lacking the kinesin-like protein Cin8p." Current Genetics 36, no. 3 (1999): 113–23. http://dx.doi.org/10.1007/s002940050480.

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Dissmeyer, Nico, Susana Rivas, and Emmanuelle Graciet. "Life and death of proteins after protease cleavage: protein degradation by the N-end rule pathway." New Phytologist 218, no. 3 (2017): 929–35. http://dx.doi.org/10.1111/nph.14619.

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Muñoz-Escobar, Juliana, Guennadi Kozlov, Jean-François Trempe, and Kalle Gehring. "An UBR-box from a non-N-recognin: Crystal Structure of the UBR domain of UBR6." Acta Crystallographica Section A Foundations and Advances 70, a1 (2014): C306. http://dx.doi.org/10.1107/s2053273314096934.

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The degradation of many short-lived proteins in eukaryotic cells is carried out by the Ubiquitin Proteasome System. The N-end rule pathway links the half-life of proteins to the identity of its N-terminal residue, also called N-degron. Destabilizing N-degrons, are recognized by E3 ubiquitin ligases termed N-recognins. N-degrons are grouped into type 1, composed of basic residues, and type 2, composed of bulky hydrophobic residues. In mammals, four N-recognins mediate the N-end rule pathway: UBR1, UBR2, UBR4 and UBR5. These proteins share a ~70-residue zinc finger-like motif termed the Ubiquiti
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Kwon, Yong Tae, Seth A. Balogh, Ilia V. Davydov, et al. "Altered Activity, Social Behavior, and Spatial Memory in Mice Lacking the NTAN1p Amidase and the Asparagine Branch of the N-End Rule Pathway." Molecular and Cellular Biology 20, no. 11 (2000): 4135–48. http://dx.doi.org/10.1128/mcb.20.11.4135-4148.2000.

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ABSTRACT The N-end rule relates the in vivo half-life of a protein to the identity of its N-terminal residue. N-terminal asparagine and glutamine are tertiary destabilizing residues, in that they are enzymatically deamidated to yield secondary destabilizing residues aspartate and glutamate, which are conjugated to arginine, a primary destabilizing residue. N-terminal arginine of a substrate protein is bound by theUbr1-encoded E3α, the E3 component of the ubiquitin-proteasome-dependent N-end rule pathway. We describe the construction and analysis of mouse strains lacking the asparagine-specific
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Schnupf, Pamela, Jianmin Zhou, Alexander Varshavsky, and Daniel A. Portnoy. "Listeriolysin O Secreted by Listeria monocytogenes into the Host Cell Cytosol Is Degraded by the N-End Rule Pathway." Infection and Immunity 75, no. 11 (2007): 5135–47. http://dx.doi.org/10.1128/iai.00164-07.

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ABSTRACT The intracellular pathogen Listeria monocytogenes escapes from a phagosomal compartment into the cytosol by secreting the pore-forming cytolysin listeriolysin O (LLO). During the proliferation of L. monocytogenes bacteria in the mammalian cell cytosol, the secreted LLO is targeted for degradation by the ubiquitin system. We report here that LLO is a substrate of the ubiquitin-dependent N-end rule pathway, which recognizes LLO through its N-terminal Lys residue. Specifically, we demonstrated by reverse-genetic and pharmacological methods that LLO was targeted for degradation by the N-e
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Dissmeyer, Nico. "Conditional Protein Function via N-Degron Pathway–Mediated Proteostasis in Stress Physiology." Annual Review of Plant Biology 70, no. 1 (2019): 83–117. http://dx.doi.org/10.1146/annurev-arplant-050718-095937.

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The N-degron pathway, formerly the N-end rule pathway, regulates functions of regulatory proteins. It impacts protein half-life and therefore directs the actual presence of target proteins in the cell. The current concept holds that the N-degron pathway depends on the identity of the amino (N)-terminal amino acid and many other factors, such as the follow-up sequence at the N terminus, conformation, flexibility, and protein localization. It is evolutionarily conserved throughout the kingdoms. One possible entry point for substrates of the N-degron pathway is oxidation of N-terminal Cys residue
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Kim, Leehyeon, Do Hoon Kwon, Jiwon Heo, Mi Rae Park, and Hyun Kyu Song. "Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway." Journal of Biological Chemistry 295, no. 9 (2020): 2590–600. http://dx.doi.org/10.1074/jbc.ra119.010912.

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The N-degron pathway, formerly the N-end rule pathway, is a protein degradation process that determines the half-life of proteins based on their N-terminal residues. In contrast to the well-established in vivo studies over decades, in vitro studies of this pathway, including biochemical characterization and high-resolution structures, are relatively limited. In this study, we have developed a unique fusion technique using microtubule-associated protein 1A/1B light chain 3B, a key marker protein of autophagy, to tag the N terminus of the proteins involved in the N-degron pathway, which enables
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Aitken, Stuart, Ross D. Alexander, and Jean D. Beggs. "A rule-based kinetic model of RNA polymerase II C-terminal domain phosphorylation." Journal of The Royal Society Interface 10, no. 86 (2013): 20130438. http://dx.doi.org/10.1098/rsif.2013.0438.

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The complexity of many RNA processing pathways is such that a conventional systems modelling approach is inadequate to represent all the molecular species involved. We demonstrate that rule-based modelling permits a detailed model of a complex RNA signalling pathway to be defined. Phosphorylation of the RNA polymerase II (RNAPII) C-terminal domain (CTD; a flexible tail-like extension of the largest subunit) couples pre-messenger RNA capping, splicing and 3′ end maturation to transcriptional elongation and termination, and plays a central role in integrating these processes. The phosphorylation
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Dissertations / Theses on the topic "N-end rule like pathway"

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Apitz, Janina. "Charakterisierung von Arabidopsis HEMA-Mutanten und in vivo-Analyse funktioneller Domänen der pflanzlichen Glutamyl-tRNA-Reduktasen." Doctoral thesis, Humboldt-Universität zu Berlin, Lebenswissenschaftliche Fakultät, 2016. http://dx.doi.org/10.18452/17527.

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Die Tetrapyrrolbiosynthese (TBS) führt zu wichtigen Endprodukten wie Häm und Chlorophyll. Das gemeinsame Vorstufenmolekül aller Tetrapyrrole ist die 5-Aminolävulinsäure (ALA), die in Pflanzen über den C5-Weg aus Glutamat synthetisiert wird. Das erste spezifische Enzym der ALA-Synthese und somit auch der TBS ist die Glutamyl-tRNA Reduktase (GluTR). Sie unterliegt als Schlüsselenzym einer strengen Regulation. Aufgrund der unterschiedlichen Expression der HEMA-Gene in Arabidopsis wird ein differenzieller Beitrag der GluTR-Isoformen zu den Endprodukten der TBS vermutet. Analysen von knockout-Muta
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Jones, Peter Dafydd. "The function of the N-end rule pathway in Arabidopsis seed germination." Thesis, University of Nottingham, 2011. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.546566.

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Dissmeyer, Nico [Verfasser]. "Protein recognition and degradation via the N-end rule pathway : [kumulative Habilitation] / Nico Dissmeyer." Halle, 2018. http://d-nb.info/1168627575/34.

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Rooney, D. J. "An investigation into the mechanism and function of cysteine oxidation in the plant N-end rule pathway." Thesis, University of Nottingham, 2017. http://eprints.nottingham.ac.uk/39348/.

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Flooding events are becoming more common throughout the world as a result of climate change, resulting in reduced crop yields. It was recently discovered that plants sense low oxygen (O2) (associated with flooding) through regulated proteolysis of the group VII Ethylene Response Factor transcription factors (ERFVIIs), via the Cys-Arg/N-end rule pathway of ubiquitin mediated proteolysis, which also senses another gas, nitric oxide (NO). The N-terminal (Nt) Cys of physiological (e.g. ERFVIIs) and artificial substrates was shown to be key for N-end rule function, and work in mammalian systems sug
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Wang, Xu. "The role of ethylene and the N-end rule pathway in the regulation of Arabidopsis seed dormancy." Electronic Thesis or Diss., Sorbonne université, 2019. http://www.theses.fr/2019SORUS421.

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L'éthylène comme la stratification au froid et le GA3, stimule la germination des graines d'Arabidopsis thaliana (Col-0) ayant une dormance primaire, à 25 °C et à l'obscurité. L'élimination de la dormance au froid n'exige pas ETR1, EIN4 et EIN2, alors que l'effet du GA3 nécessite ETR1. L'effet stimulateur de l'éthylène est associé à une réduction de l'expression des gènes impliqués dans les voies de signalisation des GAs (DELLAs) et de l'ABA (ABI5). Les graines du mutant prt6 affectées dans la voie "N-end rule" de la protéolyse, sont insensibles à l'éthylène, montrant que PRT6 intervient dans
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Román, Hernández Giselle. "The N-end rule degradation pathway : substrate recognition and staged delivery to the CIpAP protease by the CIpS adaptor protein." Thesis, Massachusetts Institute of Technology, 2011. http://hdl.handle.net/1721.1/65296.

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Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Biology, June 2011.<br>"June 2011." Cataloged from PDF version of thesis.<br>Includes bibliographical references (p. 158-165).<br>Regulated protein degradation is crucial in the regulation of many physiological processes as well as in protein quality control. In all organisms, ranging from bacteria to mammals, ATP-dependent proteases carry out regulated protein degradation in order to maintain homeostasis as well as to respond to stress. ATP-dependent proteases are responsible for the degradation of a broad array of substrates an
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Costa, Broseta Álvaro. "Regulation of the nitric oxide synthesis and signaling by posttranslational modifications and N-end rule pathway-mediated proteolysis in Arabidopsis thaliana." Doctoral thesis, Universitat Politècnica de València, 2019. http://hdl.handle.net/10251/114825.

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El óxido nítrico (NO) es una molécula gaseosa altamente reactiva que regula el crecimiento y el desarrollo de las plantas así como sus respuestas de defensa. El NO se produce principalmente a partir de nitrito por las nitrato reductasas (NRs) en balance con las nitrito reductasas (NiRs), y es percibido a través de un mecanismo en el que está involucrada la proteólisis dirigida por la secuencia aminoterminal del grupo VII de los factores de transcripción ERF (ERFVIIs). El NO ejerce especialmente su función señalizadora al causar modificaciones postraduccionales en las proteínas y alterar su fun
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Prasad, Geeta. "To investigate the relationship between substrates of the N-end rule pathway and genes regulated by 'GCCGCC' cis-elements in Arabidopsis thaliana." Thesis, University of Nottingham, 2016. http://eprints.nottingham.ac.uk/33082/.

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The N-end rule pathway of targeted proteolysis is regulated by Group VII ethylene response factors (ERFVII’s). The aim of this research work was to analyse the relationship between substrates (ERFVII’s) of the N-end rule pathway and genes, which have promoters containing a double ‘GCCGCC’ Ethylene-Responsive Element Binding Protein (EBP) cis-element. Several genes were identified containing double EBP elements. Cloning and transformation of the promoters from five of these genes (PYL, ERD4, AT1G14810, AT3G13440 and AT5G44420) carrying two copies of the GCC-boxes present in the 5' UTR (5’ untra
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Pazo, Pelegrí Esther 1993. "New pathways regulating MBF-dependent transcription in fission yeast." Doctoral thesis, TDX (Tesis Doctorals en Xarxa), 2021. http://hdl.handle.net/10803/672476.

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At the end of G1 phase, cells have to decide between continue proliferation or remain in a quiescent state (G0). This decision point, known as “Start” in yeast and “Restriction Point” in metazoans, marks irreversibly the commitment to the completion of a new cell cycle, and is regulated mainly by the activity of the G1 CDK and the induction of the G1-to-S transcriptional program. The MBF transcription factor complex (functional homolog of pRB-E2F in metazoans) drives the G1-to-S transcriptional wave in the fission yeast Schizosaccharomyces pombe. We have previously described how the co-repress
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Rovere, Martina. "Étude fonctionnelle de la famille des facteurs de transcription ERF-VIIs chez Medicago truncatula : régulateurs clés de l’adaptation au manque d’oxygène." Thesis, Université Côte d'Azur (ComUE), 2018. http://www.theses.fr/2018AZUR4037/document.

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Les légumineuses sont connues pour leurs capacités à établir une relation symbiotique avec des bactéries du sol fixatrices de l'azote atmosphérique. Cette interaction aboutit à la formation d'un nouvel organe au niveau des racines, la nodosité, au sein duquel le symbiote convertit l'azote atmosphérique (N2) en ammoniac, qui peut être directement consommé par les plantes. A l’intérieur de cette nodosité, la concentration en oxygène (O2) est maintenue à un très faible niveau car la réaction de réduction du N2 par l’enzyme bactérienne nitrogénase est inhibée par des traces d’oxygène. Un mécanisme
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Book chapters on the topic "N-end rule like pathway"

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Varshavsky, A., C. Byrd, I. V. Davydov, et al. "The N-End Rule Pathway." In Ubiquitin and the Biology of the Cell. Springer US, 1998. http://dx.doi.org/10.1007/978-1-4899-1922-9_8.

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Morrow, Gary W. "The Acetate Pathway: Biosynthesis of Polyketides and Related Compounds." In Bioorganic Synthesis. Oxford University Press, 2016. http://dx.doi.org/10.1093/oso/9780199860531.003.0008.

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We saw in the previous chapter how Otto Wallach’s early proposal regarding the structural origin of terpenoid natural products was later refined by the insightful work of Leopold Rudzicka, leading to the biogenetic isoprene rule and all that it implies. In a nearly parallel fashion, we find in our present chapter a second, unrelated class of naturally occurring compounds whose characteristic structural features prompted an initial innovative hypothesis by J. N. Collie near the turn of the 20th century. Collie proposed that certain natural compounds might arise from precursors containing repeated “ketide” (–CH2CO–) units which could then undergo subsequent condensations and other reactions typical of carbonyl compounds to produce some of the observed structures. Unfortunately, Collie’s work was more or less ignored and largely forgotten for nearly a half century, only to be reimagined and expanded in the middle of the century by A. J. Birch, another pioneer whose proposals met with considerable initial resistance. But unlike his predecessor, Birch ultimately prevailed by providing experimental results that supported a comprehensive theory of the biochemical origin of the group of compounds now universally known as “polyketide” natural products. This structurally diverse family includes some of the most useful medicinal agents now known to us, with many members possessing powerful antibacterial, antifungal, anticancer, immunosuppressant, and even cholesterol-lowering biological properties. As we see in Fig. 5.1, such structures range from the relatively simple to the exceedingly complex and may include large macrocyclic lactone rings (macrolides) such as erythromycin, polycyclic ethers such as monensin A, polycyclic structures which may be partly or mostly aromatic as in tetracycline, griseofulvin, or daunorubicin, or nonaromatic polycyclics such as tacrolimus and lovastatin. Some also contain noncyclic linear components that may be saturated, oxygenated, or unsaturated, as seen in different regions of amphotericin B which, like erythromycin, daunorubicin, and many other polyketides, also possesses an aglycone core which has been glycosylated with a carbohydrate component at a specific position. But in spite of this range of structures, many polyketide compounds share some common features that ultimately become more evident upon closer inspection; six-membered rings (either aromatic or nonaromatic) and multiple oxygens which tend to appear in a repeating 1,3-relationship to one another on both acyclic, cyclic, and aromatic structures.
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Varshavsky, Alexander. "The Ubiquitin System and the N-End Rule Pathway." In The Ubiquitin-Proteasome Proteolytic System. WORLD SCIENTIFIC, 2002. http://dx.doi.org/10.1142/9789812776877_0002.

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Zenker, Martin. "UBR1, the N-End-Rule Pathway, and the Johanson-Blizzard Syndrome." In Epstein's Inborn Errors of Development. Oxford University Press, 2016. http://dx.doi.org/10.1093/med/9780199934522.003.0166.

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Sobanski, Piotr. "Palliative and end-of-life care in elderly subjects with cardiovascular disease." In ESC CardioMed. Oxford University Press, 2018. http://dx.doi.org/10.1093/med/9780198784906.003.0711.

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Palliative care (PC) is holistic care that encompasses prevention, assessment, and treatment of symptoms, and addresses the psychological, social, and spiritual problems of ill people and their relatives with the goal of improving quality of life and, finally, dying. It is not an alternative but a supplement to curative treatment, making symptom alleviation and quality of life equally important goals for management and care as healing along the whole disease trajectory. The SENSE model describes elements of PC: Symptom management, dEcision-making, Networking, Support, and End-of-life care. People with heart disease, particularly those with advanced heart failure (HF), benefit from PC care. Pain, breathlessness, tiredness, depression, anxiety, and dry mouth are frequent symptoms among people with HF and could be effectively alleviated with PC. Many of these symptoms, almost constantly present in HF patients, are usually not specifically targeted by medical interventions. Preparedness for anticipatory death improves quality of life during dying for patients and their relatives, and improves satisfaction with care. The greatest challenge still lies in recognizing unmet PC needs and involving a PC team appropriately early, not simply in the very last hours of life. A number of specific issues, such as the modification of implantable cardioverter defibrillator activity or withdrawal of ventricular assist device support, can be addressed by preparing advance directives leading to protecting patients from unwished, usually futile, therapies when they become imminently dying and/or incompetent for decision-making. PC also gives support to cardiology teams in difficult communications on end-of-life issues. Modern PC manages or prevents suffering in people with advanced diseases, independent of diagnosis and prognosis and care for their relatives. It can be provided additionally to disease-specific management as a parallel care, or sometimes as the main care pathway in people close to death as end-of-life care. Parallel PC care should be needs driven; end-of-life care can additionally be prognosis driven. In the majority of cardiological patients PC can/should be delivered by the cardio team that has been treating the person to date and who applies the general PC rules (symptom and distress assessment and management). The PC specialist should ensure consultations in case of difficult/resistant problems, and take the lead in treatment only rarely, if needed. PC acknowledges four dimensions influencing a person’s quality of life: physical, psychological/emotional, spiritual, and social. Each of them needs to be addressed effectively which may require the involvement of a multidisciplinary team. A PC team can provide important support to the treatment team in analysing/solving complex management-related ethical issues.
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Conference papers on the topic "N-end rule like pathway"

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Samanta, Asokendu, and P. Kurinjivelan. "Fatigue Life Assessment of Offshore Patrol Vessel." In ASME 2009 28th International Conference on Ocean, Offshore and Arctic Engineering. ASMEDC, 2009. http://dx.doi.org/10.1115/omae2009-79005.

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Fatigue is a phenomenon, which needs to be considered in the present day’s vessel design. The welded joints are particularly affected by the fatigue damage due to high stress concentrations caused by the metallurgical discontinuities present in the weld. For oil tankers and bulk carriers adequate guidelines for the fatigue strength assessment have been established by the classification societies. But for navy vessel, like offshore patrol vessel, the design guidelines for the fatigue strength analysis are not widely available. In the present paper, an attempt has been made to calculate the fati
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