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1

Yang, Ling-Ling, Zhao Jiang, Yan Li, En-Tao Wang, and Xiao-Yang Zhi. "Plasmids Related to the Symbiotic Nitrogen Fixation Are Not Only Cooperated Functionally but Also May Have Evolved over a Time Span in Family Rhizobiaceae." Genome Biology and Evolution 12, no. 11 (2020): 2002–14. http://dx.doi.org/10.1093/gbe/evaa152.

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Abstract Rhizobia are soil bacteria capable of forming symbiotic nitrogen-fixing nodules associated with leguminous plants. In fast-growing legume-nodulating rhizobia, such as the species in the family Rhizobiaceae, the symbiotic plasmid is the main genetic basis for nitrogen-fixing symbiosis, and is susceptible to horizontal gene transfer. To further understand the symbioses evolution in Rhizobiaceae, we analyzed the pan-genome of this family based on 92 genomes of type/reference strains and reconstructed its phylogeny using a phylogenomics approach. Intriguingly, although the genetic expansi
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2

Velázquez, Encarna, Alvaro Peix, José Luis Zurdo-Piñiro, et al. "The Coexistence of Symbiosis and Pathogenicity-Determining Genes in Rhizobium rhizogenes Strains Enables Them to Induce Nodules and Tumors or Hairy Roots in Plants." Molecular Plant-Microbe Interactions® 18, no. 12 (2005): 1325–32. http://dx.doi.org/10.1094/mpmi-18-1325.

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Bacteria belonging to the family Rhizobiaceae may establish beneficial or harmful relationships with plants. The legume endosymbionts contain nod and nif genes responsible for nodule formation and nitrogen fixation, respectively, whereas the pathogenic strains carry vir genes responsible for the formation of tumors or hairy roots. The symbiotic and pathogenic strains currently belong to different species of the genus Rhizobium and, until now, no strains able to establish symbiosis with legumes and also to induce tumors or hairy roots in plants have been reported. Here, we report for the first
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3

Palacios, J. M., H. Manyani, M. Martínez, et al. "Genetics and biotechnology of the H2-uptake [NiFe] hydrogenase from Rhizobium leguminosarum bv. viciae, a legume endosymbiotic bacterium." Biochemical Society Transactions 33, no. 1 (2005): 94–96. http://dx.doi.org/10.1042/bst0330094.

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A limited number of strains belonging to several genera of Rhizobiaceae are capable of expressing a hydrogenase system that allows partial or full recycling of hydrogen evolved by nitrogenase, thus increasing the energy efficiency of the nitrogen fixation process. This review is focused on the genetics and biotechnology of the hydrogenase system from Rhizobium leguminosarum bv. viciae, a frequent inhabitant of European soils capable of establishing symbiotic association with peas, lentils, vetches and other legumes.
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Menéndez, Esther, Jose David Flores-Félix, Martha Helena Ramírez-Bahena, et al. "Genome Analysis of Endobacterium cerealis, a Novel Genus and Species Isolated from Zea mays Roots in North Spain." Microorganisms 8, no. 6 (2020): 939. http://dx.doi.org/10.3390/microorganisms8060939.

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In the present work, we analyse the genomic and phenotypic characteristics of a strain named RZME27T isolated from roots of a Zea mays plant grown in Spain. The phylogenetic analyses of 16S rRNA gene and whole genome sequences showed that the strain RZME27T clustered with the type strains of Neorhizobium galegae and Pseudorhizobium pelagicum from the family Rhizobiaceae. This family encompasses several genera establishing symbiosis with legumes, but the genes involved in nodulation and nitrogen fixation are absent in its genome. Nevertheless, genes related to plant colonization, such as those
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5

Crespo-Rivas, Juan, Pilar Navarro-Gómez, Cynthia Alias-Villegas, et al. "Sinorhizobium fredii HH103 RirA Is Required for Oxidative Stress Resistance and Efficient Symbiosis with Soybean." International Journal of Molecular Sciences 20, no. 3 (2019): 787. http://dx.doi.org/10.3390/ijms20030787.

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Members of Rhizobiaceae contain a homologue of the iron-responsive regulatory protein RirA. In different bacteria, RirA acts as a repressor of iron uptake systems under iron-replete conditions and contributes to ameliorate cell damage during oxidative stress. In Rhizobium leguminosarum and Sinorhizobium meliloti, mutations in rirA do not impair symbiotic nitrogen fixation. In this study, a rirA mutant of broad host range S. fredii HH103 has been constructed (SVQ780) and its free-living and symbiotic phenotypes evaluated. No production of siderophores could be detected in either the wild-type o
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6

Kumari, Diksha, and Dipjyoti Chakraborty. "Drought stress mitigation in Vigna radiata by the application of root-nodulating bacteria." Plant Science Today 4, no. 4 (2017): 209–12. http://dx.doi.org/10.14719/pst.2017.4.4.343.

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Plant growth promoting rhizobacteria (PGPR) facilitates plant growth and are of potential use as bio-fertilizer. Pulses are an important protein source in the vegetarian diet and being legumes harbour members of the Rhizobiaceae that form symbiotic relationships and nodules involved in nitrogen fixation. Vigna radiata is one such pulse crop popular in India. Nodulating bacteria were also found to mitigate biotic and abiotc stress and may be used as an alternative to chemical fertilizer for a sustainable agriculture. Here, we review rhizobial species isolated from V. radiata that have offered a
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7

Frendo, Pierre, Judith Harrison, Christel Norman, et al. "Glutathione and Homoglutathione Play a Critical Role in the Nodulation Process of Medicago truncatula." Molecular Plant-Microbe Interactions® 18, no. 3 (2005): 254–59. http://dx.doi.org/10.1094/mpmi-18-0254.

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Legumes form a symbiotic interaction with bacteria of the Rhizobiaceae family toproduce nitrogen-fixing root nodules under nitrogen-limiting conditions. This process involves the recognition of the bacterial Nod factors by the plant which mediates the entry of the bacteria into the root and nodule organogenesis. We have examined the importance of the low molecular weight thiols, glutathione (GSH) and homoglutathione (hGSH), during the nodulation process in the model legume Medicago truncatula. Using both buthionine sulfoximine, a specific inhibitor of GSH and hGSH synthesis, and transgenic roo
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8

Safronova, Vera I., Polina V. Guro, Anna L. Sazanova, et al. "Rhizobial Microsymbionts of Kamchatka Oxytropis Species Possess Genes of the Type III and VI Secretion Systems, Which Can Affect the Development of Symbiosis." Molecular Plant-Microbe Interactions® 33, no. 10 (2020): 1232–41. http://dx.doi.org/10.1094/mpmi-05-20-0114-r.

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A collection of rhizobial strains isolated from root nodules of the narrowly endemic legume species Oxytropis erecta, O. anadyrensis, O. kamtschatica, and O. pumilio originating from the Kamchatka Peninsula (Russian Federation) was obtained. Analysis of the 16S ribosomal RNA gene sequence showed a significant diversity of isolates belonging to families Rhizobiaceae (genus Rhizobium), Phyllobacteriaceae (genera Mesorhizobium, Phyllobacterium), and Bradyrhizobiaceae (genera Bosea, Tardiphaga). A plant nodulation assay showed that only strains belonging to genus Mesorhizobium could form nitrogen-
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9

Trevaskis, Ben, Gillian Colebatch, Guilhem Desbrosses, et al. "Differentiation of Plant Cells During Symbiotic Nitrogen Fixation." Comparative and Functional Genomics 3, no. 2 (2002): 151–57. http://dx.doi.org/10.1002/cfg.155.

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Nitrogen-fixing symbioses between legumes and bacteria of the family Rhizobiaceae involve differentiation of both plant and bacterial cells. Differentiation of plant root cells is required to build an organ, the nodule, which can feed and accommodate a large population of bacteria under conditions conducive to nitrogen fixation. An efficient vascular system is built to connect the nodule to the root, which delivers sugars and other nutrients to the nodule and removes the products of nitrogen fixation for use in the rest of the plant. Cells in the outer cortex differentiate to form a barrier to
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10

Brencic, Anja, and Stephen C. Winans. "Detection of and Response to Signals Involved in Host-Microbe Interactions by Plant-Associated Bacteria." Microbiology and Molecular Biology Reviews 69, no. 1 (2005): 155–94. http://dx.doi.org/10.1128/mmbr.69.1.155-194.2005.

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SUMMARY Diverse interactions between hosts and microbes are initiated by the detection of host-released chemical signals. Detection of these signals leads to altered patterns of gene expression that culminate in specific and adaptive changes in bacterial physiology that are required for these associations. This concept was first demonstrated for the members of the family Rhizobiaceae and was later found to apply to many other plant-associated bacteria as well as to microbes that colonize human and animal hosts. The family Rhizobiaceae includes various genera of rhizobia as well as species of A
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11

Giraud, Eric, and Darrell Fleischman. "Nitrogen-fixing symbiosis between photosynthetic bacteria and legumes." Photosynthesis Research 82, no. 2 (2004): 115–30. http://dx.doi.org/10.1007/s11120-004-1768-1.

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12

Sy, Abdoulaye, Eric Giraud, Philippe Jourand, et al. "Methylotrophic MethylobacteriumBacteria Nodulate and Fix Nitrogen in Symbiosis with Legumes." Journal of Bacteriology 183, no. 1 (2001): 214–20. http://dx.doi.org/10.1128/jb.183.1.214-220.2001.

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ABSTRACT Rhizobia described so far belong to three distinct phylogenetic branches within the α-2 subclass ofProteobacteria. Here we report the discovery of a fourth rhizobial branch involving bacteria of theMethylobacterium genus. Rhizobia isolated fromCrotalaria legumes were assigned to a new species, “Methylobacterium nodulans,” within theMethylobacterium genus on the basis of 16S ribosomal DNA analyses. We demonstrated that these rhizobia facultatively grow on methanol, which is a characteristic ofMethylobacterium spp. but a unique feature among rhizobia. Genes encoding two key enzymes of m
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13

Masson-Boivin, Catherine, Eric Giraud, Xavier Perret, and Jacques Batut. "Establishing nitrogen-fixing symbiosis with legumes: how many rhizobium recipes?" Trends in Microbiology 17, no. 10 (2009): 458–66. http://dx.doi.org/10.1016/j.tim.2009.07.004.

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14

Marchetti, Marta, Alain Jauneau, Delphine Capela, et al. "Shaping Bacterial Symbiosis With Legumes by Experimental Evolution." Molecular Plant-Microbe Interactions® 27, no. 9 (2014): 956–64. http://dx.doi.org/10.1094/mpmi-03-14-0083-r.

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Nitrogen-fixing symbionts of legumes have appeared after the emergence of legumes on earth, approximately 70 to 130 million years ago. Since then, symbiotic proficiency has spread to distant genera of α- and β-proteobacteria, via horizontal transfer of essential symbiotic genes and subsequent recipient genome remodeling under plant selection pressure. To tentatively replay rhizobium evolution in laboratory conditions, we previously transferred the symbiotic plasmid of the Mimosa symbiont Cupriavidus taiwanensis in the plant pathogen Ralstonia solanacearum, and selected spontaneous nodulating v
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15

Day, David A., and Penelope M. C. Smith. "Iron Transport across Symbiotic Membranes of Nitrogen-Fixing Legumes." International Journal of Molecular Sciences 22, no. 1 (2021): 432. http://dx.doi.org/10.3390/ijms22010432.

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Iron is an essential nutrient for the legume-rhizobia symbiosis and nitrogen-fixing bacteroids within root nodules of legumes have a very high demand for the metal. Within the infected cells of nodules, the bacteroids are surrounded by a plant membrane to form an organelle-like structure called the symbiosome. In this review, we focus on how iron is transported across the symbiosome membrane and accessed by the bacteroids.
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16

Werner, Gijsbert D. A., William K. Cornwell, Johannes H. C. Cornelissen, and E. Toby Kiers. "Evolutionary signals of symbiotic persistence in the legume–rhizobia mutualism." Proceedings of the National Academy of Sciences 112, no. 33 (2015): 10262–69. http://dx.doi.org/10.1073/pnas.1424030112.

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Understanding the origins and evolutionary trajectories of symbiotic partnerships remains a major challenge. Why are some symbioses lost over evolutionary time whereas others become crucial for survival? Here, we use a quantitative trait reconstruction method to characterize different evolutionary stages in the ancient symbiosis between legumes (Fabaceae) and nitrogen-fixing bacteria, asking how labile is symbiosis across different host clades. We find that more than half of the 1,195 extant nodulating legumes analyzed have a high likelihood (>95%) of being in a state of high symbiotic pers
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17

Bazin, Jérémie, Pilar Bustos-Sanmamed, Caroline Hartmann, Christine Lelandais-Brière, and Martin Crespi. "Complexity of miRNA-dependent regulation in root symbiosis." Philosophical Transactions of the Royal Society B: Biological Sciences 367, no. 1595 (2012): 1570–79. http://dx.doi.org/10.1098/rstb.2011.0228.

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The development of root systems may be strongly affected by the symbiotic interactions that plants establish with soil organisms. Legumes are able to develop symbiotic relationships with both rhizobial bacteria and arbuscular mycorrhizal fungi leading to the formation of nitrogen-fixing nodules and mycorrhizal arbuscules, respectively. Both of these symbiotic interactions involve complex cellular reprogramming and profound morphological and physiological changes in specific root cells. In addition, the repression of pathogenic defence responses seems to be required for successful symbiotic int
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18

Singh, R. J., G. H. Chung, and R. L. Nelson. "Landmark research in legumes." Genome 50, no. 6 (2007): 525–37. http://dx.doi.org/10.1139/g07-037.

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Legumes are members of the family Fabaceae or Leguminosae and include economically important grain legumes, oilseed crops, forage crops, shrubs, and tropical or subtropical trees. Legumes are a rich source of quality protein for humans and animals. They also enrich the soil by producing their own nitrogen in symbiosis with nitrogen-fixing bacteria. International centers and national institutes collect, maintain, distribute, and produce high-yielding legumes (grain-pulses, oilseeds, forages, nutraceuticals, medicinal shrubs, and trees). Legume breeders are confined within the primary gene pools
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19

Sharma, Vinay, Samrat Bhattacharyya, Rakesh Kumar, et al. "Molecular Basis of Root Nodule Symbiosis between Bradyrhizobium and ‘Crack-Entry’ Legume Groundnut (Arachis hypogaea L.)." Plants 9, no. 2 (2020): 276. http://dx.doi.org/10.3390/plants9020276.

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Nitrogen is one of the essential plant nutrients and a major factor limiting crop productivity. To meet the requirements of sustainable agriculture, there is a need to maximize biological nitrogen fixation in different crop species. Legumes are able to establish root nodule symbiosis (RNS) with nitrogen-fixing soil bacteria which are collectively called rhizobia. This mutualistic association is highly specific, and each rhizobia species/strain interacts with only a specific group of legumes, and vice versa. Nodulation involves multiple phases of interactions ranging from initial bacterial atta
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20

Klinger, Christie R., Jennifer A. Lau, and Katy D. Heath. "Ecological genomics of mutualism decline in nitrogen-fixing bacteria." Proceedings of the Royal Society B: Biological Sciences 283, no. 1826 (2016): 20152563. http://dx.doi.org/10.1098/rspb.2015.2563.

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Anthropogenic changes can influence mutualism evolution; however, the genomic regions underpinning mutualism that are most affected by environmental change are generally unknown, even in well-studied model mutualisms like the interaction between legumes and their nitrogen (N)-fixing rhizobia. Such genomic information can shed light on the agents and targets of selection maintaining cooperation in nature. We recently demonstrated that N-fertilization has caused an evolutionary decline in mutualistic partner quality in the rhizobia that form symbiosis with clover. Here, population genomic analys
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21

Vaz Martins, Teresa, and Valerie N. Livina. "What Drives Symbiotic Calcium Signalling in Legumes? Insights and Challenges of Imaging." International Journal of Molecular Sciences 20, no. 9 (2019): 2245. http://dx.doi.org/10.3390/ijms20092245.

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We review the contribution of bioimaging in building a coherent understanding of Ca 2 + signalling during legume-bacteria symbiosis. Currently, two different calcium signals are believed to control key steps of the symbiosis: a Ca 2 + gradient at the tip of the legume root hair is involved in the development of an infection thread, while nuclear Ca 2 + oscillations, the hallmark signal of this symbiosis, control the formation of the root nodule, where bacteria fix nitrogen. Additionally, different Ca 2 + spiking signatures have been associated with specific infection stages. Bioimaging is intr
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22

Bala, Neeru, P. K. Sharma, and K. Lakshminarayana. "Nodulation and nitrogen fixation by salinity-tolerant rhizobia in symbiosis with tree legumes." Agriculture, Ecosystems & Environment 33, no. 1 (1990): 33–46. http://dx.doi.org/10.1016/0167-8809(90)90142-z.

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23

Patriarca, Eduardo J., Rosarita Tatè, and Maurizio Iaccarino. "Key Role of Bacterial NH4+ Metabolism in Rhizobium-Plant Symbiosis." Microbiology and Molecular Biology Reviews 66, no. 2 (2002): 203–22. http://dx.doi.org/10.1128/mmbr.66.2.203-222.2002.

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SUMMARY Symbiotic nitrogen fixation is carried out in specialized organs, the nodules, whose formation is induced on leguminous host plants by bacteria belonging to the family Rhizobiaceae. Nodule development is a complex multistep process, which requires continued interaction between the two partners and thus the exchange of different signals and metabolites. NH4 + is not only the primary product but also the main regulator of the symbiosis: either as ammonium and after conversion into organic compounds, it regulates most stages of the interaction, from the production of nodule inducers to th
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Barros, Felipe Martins do Rêgo, Giselle Gomes Monteiro Fracetto, Felipe José Cury Fracetto, José Petrônio Mendes Júnior, Victor Lucas Vieira Prudêncio de Araújo, and Mario Andrade Lira Junior. "Silvopastoral systems drive the nitrogen-cycling bacterial community in soil." Ciência e Agrotecnologia 42, no. 3 (2018): 281–90. http://dx.doi.org/10.1590/1413-70542018423031117.

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ABSTRACT Intercropping tree legumes with forage grasses in a silvopastoral system can avoid pasture degradation benefiting the soil. In such a system, nitrogen (N) is supplied by symbiosis between legumes and bacteria. However, the pasture quality determines the action of free-living nitrogen-fixing bacteria, which possess nifH genes, which encode nitrogenase enzyme. Ammonium-oxidizing bacteria (AOB), involved in the nitrification step, can be evaluated by specific regions of the 16S rRNA corresponding to AOB. Thus, we investigated the influence of the introduction of tree legumes into a silvo
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Arnold, Markus F. F., Jon Penterman, Mohammed Shabab, Esther J. Chen, and Graham C. Walker. "Important Late-Stage Symbiotic Role of theSinorhizobium melilotiExopolysaccharide Succinoglycan." Journal of Bacteriology 200, no. 13 (2018): e00665-17. http://dx.doi.org/10.1128/jb.00665-17.

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ABSTRACTSinorhizobium melilotienters into beneficial symbiotic interactions withMedicagospecies of legumes. Bacterial exopolysaccharides play critical signaling roles in infection thread initiation and growth during the early stages of root nodule formation. After endocytosis ofS. melilotiby plant cells in the developing nodule, plant-derived nodule-specific cysteine-rich (NCR) peptides mediate terminal differentiation of the bacteria into nitrogen-fixing bacteroids. Previous transcriptional studies showed that the intensively studied cationic peptide NCR247 induces expression of theexogenes t
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MOREIRA, Fatima Maria de Souza, Katia Pereira COELHO, Paula Rose de Almeida RIBEIRO, and Amanda Azarias GUIMARÃES. "Nursery growth and rhizobia symbiosis of scandent Leguminosae species native to the Amazon region." Acta Amazonica 46, no. 4 (2016): 367–76. http://dx.doi.org/10.1590/1809-4392201600392.

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ABSTRACT A great number of species and individuals of scandent legumes establishing symbiosis with nitrogen fixing bacteria occurs in the Amazon Forest. These symbiosis probably play an important role in contributing to nitrogen incorporation in this ecossystem. The objectives of this study were to evaluate the growth of eight species of scandent legumes in five nursery substrates; to compare nodulation with rhizobia strains introduced or native to these substrates; and to characterize phenotypically and genetically these rhizobia. The experiment was carried out in a completely randomized desi
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Fagorzi, Camilla, Alice Checcucci, George diCenzo, et al. "Harnessing Rhizobia to Improve Heavy-Metal Phytoremediation by Legumes." Genes 9, no. 11 (2018): 542. http://dx.doi.org/10.3390/genes9110542.

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Rhizobia are bacteria that can form symbiotic associations with plants of the Fabaceae family, during which they reduce atmospheric di-nitrogen to ammonia. The symbiosis between rhizobia and leguminous plants is a fundamental contributor to nitrogen cycling in natural and agricultural ecosystems. Rhizobial microsymbionts are a major reason why legumes can colonize marginal lands and nitrogen-deficient soils. Several leguminous species have been found in metal-contaminated areas, and they often harbor metal-tolerant rhizobia. In recent years, there have been numerous efforts and discoveries rel
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Alloing, Geneviève, Karine Mandon, Eric Boncompagni, Françoise Montrichard, and Pierre Frendo. "Involvement of Glutaredoxin and Thioredoxin Systems in the Nitrogen-Fixing Symbiosis between Legumes and Rhizobia." Antioxidants 7, no. 12 (2018): 182. http://dx.doi.org/10.3390/antiox7120182.

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Leguminous plants can form a symbiotic relationship with Rhizobium bacteria, during which plants provide bacteria with carbohydrates and an environment appropriate to their metabolism, in return for fixed atmospheric nitrogen. The symbiotic interaction leads to the formation of a new organ, the root nodule, where a coordinated differentiation of plant cells and bacteria occurs. The establishment and functioning of nitrogen-fixing symbiosis involves a redox control important for both the plant-bacteria crosstalk and the regulation of nodule metabolism. In this review, we discuss the involvement
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Chaulagain, Diptee, and Julia Frugoli. "The Regulation of Nodule Number in Legumes Is a Balance of Three Signal Transduction Pathways." International Journal of Molecular Sciences 22, no. 3 (2021): 1117. http://dx.doi.org/10.3390/ijms22031117.

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Nitrogen is a major determinant of plant growth and productivity and the ability of legumes to form a symbiotic relationship with nitrogen-fixing rhizobia bacteria allows legumes to exploit nitrogen-poor niches in the biosphere. But hosting nitrogen-fixing bacteria comes with a metabolic cost, and the process requires regulation. The symbiosis is regulated through three signal transduction pathways: in response to available nitrogen, at the initiation of contact between the organisms, and during the development of the nodules that will host the rhizobia. Here we provide an overview of our know
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Bonaldi, Katia, Benjamin Gourion, Joel Fardoux, et al. "Large-Scale Transposon Mutagenesis of Photosynthetic Bradyrhizobium Sp. Strain ORS278 Reveals New Genetic Loci Putatively Important for Nod-Independent Symbiosis with Aeschynomene indica." Molecular Plant-Microbe Interactions® 23, no. 6 (2010): 760–70. http://dx.doi.org/10.1094/mpmi-23-6-0760.

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Photosynthetic Bradyrhizobium strains possess the unusual ability to form nitrogen-fixing nodules on a specific group of legumes in the absence of Nod factors. To obtain insight into the bacterial genes involved in this Nod-independent symbiosis, we screened 15,648 Tn5 mutants of Bradyrhizobium sp. strain ORS278 for clones affected in root symbiosis with Aeschynomene indica. From the 268 isolated mutants, 120 mutants were altered in nodule development (Ndv–) and 148 mutants were found to be deficient in nitrogen fixation (Fix–). More than 50% of the Ndv– mutants were found to be altered in pur
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31

Kinkema, Mark, Paul T. Scott, and Peter M. Gresshoff. "Legume nodulation: successful symbiosis through short- and long-distance signalling." Functional Plant Biology 33, no. 8 (2006): 707. http://dx.doi.org/10.1071/fp06056.

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Nodulation in legumes provides a major conduit of available nitrogen into the biosphere. The development of nitrogen-fixing nodules results from a symbiotic interaction between soil bacteria, commonly called rhizobia, and legume plants. Molecular genetic analysis in both model and agriculturally important legume species has resulted in the identification of a variety of genes that are essential for the establishment, maintenance and regulation of this symbiosis. Autoregulation of nodulation (AON) is a major internal process by which nodule numbers are controlled through prior nodulation events
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Berger, Antoine, Alexandre Boscari, Pierre Frendo, and Renaud Brouquisse. "Nitric oxide signaling, metabolism and toxicity in nitrogen-fixing symbiosis." Journal of Experimental Botany 70, no. 17 (2019): 4505–20. http://dx.doi.org/10.1093/jxb/erz159.

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AbstractInteractions between legumes and rhizobia lead to the establishment of a symbiotic relationship characterized by the formation of a new organ, the nodule, which facilitates the fixation of atmospheric nitrogen (N2) by nitrogenase through the creation of a hypoxic environment. Significant amounts of nitric oxide (NO) accumulate at different stages of nodule development, suggesting that NO performs specific signaling and/or metabolic functions during symbiosis. NO, which regulates nodule gene expression, accumulates to high levels in hypoxic nodules. NO accumulation is considered to assi
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Uchiumi, Toshiki, Takuji Ohwada, Manabu Itakura, et al. "Expression Islands Clustered on the Symbiosis Island of the Mesorhizobium loti Genome." Journal of Bacteriology 186, no. 8 (2004): 2439–48. http://dx.doi.org/10.1128/jb.186.8.2439-2448.2004.

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ABSTRACT Rhizobia are symbiotic nitrogen-fixing soil bacteria that are associated with host legumes. The establishment of rhizobial symbiosis requires signal exchanges between partners in microaerobic environments that result in mutualism for the two partners. We developed a macroarray for Mesorhizobium loti MAFF303099, a microsymbiont of the model legume Lotus japonicus, and monitored the transcriptional dynamics of the bacterium during symbiosis, microaerobiosis, and starvation. Global transcriptional profiling demonstrated that the clusters of genes within the symbiosis island (611 kb), a t
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Hoang, Nhung T., Katalin Tóth, and Gary Stacey. "The role of microRNAs in the legume–Rhizobium nitrogen-fixing symbiosis." Journal of Experimental Botany 71, no. 5 (2020): 1668–80. http://dx.doi.org/10.1093/jxb/eraa018.

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Abstract Under nitrogen starvation, most legume plants form a nitrogen-fixing symbiosis with Rhizobium bacteria. The bacteria induce the formation of a novel organ called the nodule in which rhizobia reside as intracellular symbionts and convert atmospheric nitrogen into ammonia. During this symbiosis, miRNAs are essential for coordinating the various plant processes required for nodule formation and function. miRNAs are non-coding, endogenous RNA molecules, typically 20–24 nucleotides long, that negatively regulate the expression of their target mRNAs. Some miRNAs can move systemically within
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Prévost, Danielle, Pascal Drouin, Serge Laberge, Annick Bertrand, Jean Cloutier, and Gabriel Lévesque. "Cold-adapted rhizobia for nitrogen fixation in temperate regions." Canadian Journal of Botany 81, no. 12 (2003): 1153–61. http://dx.doi.org/10.1139/b03-113.

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Rhizobia from Canadian soils were selected for cold adaptation with the aim of improving productivity of legumes that are subjected to cool temperatures during the growing season. One approach was to use rhizobia associated with legume species indigenous to arctic and subarctic regions: (i) Mesorhizobium sp. isolated from Astragalus and Oxytropis spp. and (ii) Rhizobium leguminosarum from Lathryrus spp. The majority of these rhizobia are considered psychrotrophs because they can grow at 0 °C. The advantages of cold adaptation of arctic Mesorhizobium to improve legume symbiosis were demonstrate
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36

Scheublin, Tanja R., Karyn P. Ridgway, J. Peter W. Young, and Marcel G. A. van der Heijden. "Nonlegumes, Legumes, and Root Nodules Harbor Different Arbuscular Mycorrhizal Fungal Communities." Applied and Environmental Microbiology 70, no. 10 (2004): 6240–46. http://dx.doi.org/10.1128/aem.70.10.6240-6246.2004.

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ABSTRACT Legumes are an important plant functional group since they can form a tripartite symbiosis with nitrogen-fixing Rhizobium bacteria and phosphorus-acquiring arbuscular mycorrhizal fungi (AMF). However, not much is known about AMF community composition in legumes and their root nodules. In this study, we analyzed the AMF community composition in the roots of three nonlegumes and in the roots and root nodules of three legumes growing in a natural dune grassland. We amplified a portion of the small-subunit ribosomal DNA and analyzed it by using restriction fragment length polymorphism and
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Tsikou, Daniela, Zhe Yan, Dennis B. Holt, et al. "Systemic control of legume susceptibility to rhizobial infection by a mobile microRNA." Science 362, no. 6411 (2018): 233–36. http://dx.doi.org/10.1126/science.aat6907.

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Nitrogen-fixing root nodules on legumes result from two developmental processes, bacterial infection and nodule organogenesis. To balance symbiosis and plant growth, legume hosts restrict nodule numbers through an inducible autoregulatory process. Here, we present a mechanism where repression of a negative regulator ensures symbiotic susceptibility of uninfected roots of the host Lotus japonicus. We show that microRNA miR2111 undergoes shoot-to-root translocation to control rhizobial infection through posttranscriptional regulation of the symbiosis suppressor TOO MUCH LOVE in roots. miR2111 ma
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Rigg, Jessica L., Ashlea T. Webster, Deirdre M. Harvey, et al. "Cross-host compatibility of commercial rhizobial strains for new and existing pasture legume cultivars in south-eastern Australia." Crop and Pasture Science 72, no. 9 (2021): 652. http://dx.doi.org/10.1071/cp20234.

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Perennial legumes have potential to increase pasture productivity in the high rainfall zone (600–850 mm) of south-eastern Australia through their ability to use summer rainfall and fix nitrogen (N2). Various perennial legumes are being evaluated for this environment; however, little information exists on legume–rhizobia cross-host compatibility and its consequences for biological N2 fixation. This is especially important when legumes are sown into fields with a background of competitive rhizobia such as WSM1325 or sown as a pasture mix with different host–symbiont pairs. We studied the effecti
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Staehelin, Christian, Lennart S. Forsberg, Wim D'Haeze, et al. "Exo-Oligosaccharides of Rhizobium sp. Strain NGR234 Are Required for Symbiosis with Various Legumes." Journal of Bacteriology 188, no. 17 (2006): 6168–78. http://dx.doi.org/10.1128/jb.00365-06.

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ABSTRACT Rhizobia are nitrogen-fixing bacteria that establish endosymbiotic associations with legumes. Nodule formation depends on various bacterial carbohydrates, including lipopolysaccharides, K-antigens, and exopolysaccharides (EPS). An acidic EPS from Rhizobium sp. strain NGR234 consists of glucosyl (Glc), galactosyl (Gal), glucuronosyl (GlcA), and 4,6-pyruvylated galactosyl (PvGal) residues with β-1,3, β-1,4, β-1,6, α-1,3, and α-1,4 glycoside linkages. Here we examined the role of NGR234 genes in the synthesis of EPS. Deletions within the exoF, exoL, exoP, exoQ, and exoY genes suppressed
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Ruiz, Bryan, Åsa Frostegård, Claude Bruand, and Eliane Meilhoc. "Rhizobia: highways to NO." Biochemical Society Transactions 49, no. 1 (2021): 495–505. http://dx.doi.org/10.1042/bst20200989.

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The interaction between rhizobia and their legume host plants conduces to the formation of specialized root organs called nodules where rhizobia differentiate into bacteroids which fix atmospheric nitrogen to the benefit of the plant. This beneficial symbiosis is of importance in the context of sustainable agriculture as legumes do not require the addition of nitrogen fertilizer to grow. Interestingly, nitric oxide (NO) has been detected at various steps of the rhizobium–legume symbiosis where it has been shown to play multifaceted roles. Both bacterial and plant partners are involved in NO sy
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Messinese, Elsa, Jeong-Hwan Mun, Li Huey Yeun, et al. "A Novel Nuclear Protein Interacts With the Symbiotic DMI3 Calcium- and Calmodulin-Dependent Protein Kinase of Medicago truncatula." Molecular Plant-Microbe Interactions® 20, no. 8 (2007): 912–21. http://dx.doi.org/10.1094/mpmi-20-8-0912.

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Many higher plants establish symbiotic relationships with arbuscular mycorrhizal (AM) fungi that improve their ability to acquire nutrients from the soil. In addition to establishing AM symbiosis, legumes also enter into a nitrogen-fixing symbiosis with bacteria known as rhizobia that results in the formation of root nodules. Several genes involved in the perception and transduction of bacterial symbiotic signals named “Nod factors” have been cloned recently in model legumes through forward genetic approaches. Among them, DMI3(Doesn't Make Infections 3) is a calcium- and calmodulin-dependent k
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42

Arrighi, Jean-François, Fabienne Cartieaux, Spencer C. Brown, et al. "Aeschynomene evenia, a Model Plant for Studying the Molecular Genetics of the Nod-Independent Rhizobium-Legume Symbiosis." Molecular Plant-Microbe Interactions® 25, no. 7 (2012): 851–61. http://dx.doi.org/10.1094/mpmi-02-12-0045-ta.

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Research on the nitrogen-fixing symbiosis has been focused, thus far, on two model legumes, Medicago truncatula and Lotus japonicus, which use a sophisticated infection process involving infection thread formation. However, in 25% of the legumes, the bacterial entry occurs more simply in an intercellular fashion. Among them, some Aeschynomene spp. are nodulated by photosynthetic Bradyrhizobium spp. that do not produce Nod factors. This interaction is believed to represent a living testimony of the ancestral state of the rhizobium–legume symbiosis. To decipher the mechanisms of this Nod-indepen
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Schrader, James A., Mark Kroggel, and William R. Graves. "Nodulation and Nitrogen-fixing Capacity of Rhizobial Isolates from China in Symbiosis with Maackia amurensis." Journal of Environmental Horticulture 25, no. 1 (2007): 47–50. http://dx.doi.org/10.24266/0738-2898-25.1.47.

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Abstract Maackia amurensis Rupr. & Maxim (Amur maackia) is a leguminous Asian tree capable of forming N2-fixing symbioses with soil-borne Bradyrhizobium spp. This trait sets Amur maackia apart from many legumes now produced in North American nurseries. Two determinants of N2-fixing capacity in legumes are the compatibility of the host plant and its bacterial microsymbiont and the metabolic efficiency of compatible bacteria. Our objectives were to isolate numerous rhizobia from the root zones of indigenous Amur maackia in China and to select isolates that form superior N2-fixing relationshi
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Pawlowski, Katharina, Susan Swensen, Changhui Guan, Az-Eddine Hadri, Alison M. Berry, and Ton Bisseling. "Distinct Patterns of Symbiosis-Related Gene Expression in Actinorhizal Nodules from Different Plant Families." Molecular Plant-Microbe Interactions® 16, no. 9 (2003): 796–807. http://dx.doi.org/10.1094/mpmi.2003.16.9.796.

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Phylogenetic analyses suggest that, among the members of the Eurosid I clade, nitrogen-fixing root nodule symbioses developed multiple times independently, four times with rhizobia and four times with the genus Frankia. In order to understand the degree of similarity between symbiotic systems of different phylogenetic subgroups, gene expression patterns were analyzed in root nodules of Datisca glomerata and compared with those in nodules of another actinorhizal plant, Alnus glutinosa, and with the expression patterns of homologous genes in legumes. In parallel, the phylogeny of actinorhizal pl
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Ballard, R. A., and N. Charman. "Nodulation and growth of pasture legumes with naturalised soil rhizobia. 1. Annual Medicago spp." Australian Journal of Experimental Agriculture 40, no. 7 (2000): 939. http://dx.doi.org/10.1071/ea99112.

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The ability of 11 species of annual medics (Medicago doliata, M. laciniata, M. littoralis, M. minima, M. orbicularis, M. polymorpha, M. praecox, M. rigidula, M. rigiduloides, M. tornata and M. truncatula) to nodulate and fix nitrogen with naturalised rhizobia from 28 South Australian soils was assessed. The number of rhizobia in the soils was estimated. Medic shoot dry matter production and nodulation were measured, after inoculation of medic seedlings with a soil suspension, in 2 glasshouse experiments. The number of medic rhizobia ranged from 0.4 10 2 to 1.5 10 6 per gram soil. Medicago laci
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Gully, Djamel, Daniel Gargani, Katia Bonaldi, et al. "A Peptidoglycan-Remodeling Enzyme Is Critical for Bacteroid Differentiation in Bradyrhizobium spp. During Legume Symbiosis." Molecular Plant-Microbe Interactions® 29, no. 6 (2016): 447–57. http://dx.doi.org/10.1094/mpmi-03-16-0052-r.

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In response to the presence of compatible rhizobium bacteria, legumes form symbiotic organs called nodules on their roots. These nodules house nitrogen-fixing bacteroids that are a differentiated form of the rhizobium bacteria. In some legumes, the bacteroid differentiation comprises a dramatic cell enlargement, polyploidization, and other morphological changes. Here, we demonstrate that a peptidoglycan-modifying enzyme in Bradyrhizobium strains, a DD-carboxypeptidase that contains a peptidoglycan-binding SPOR domain, is essential for normal bacteroid differentiation in Aeschynomene species. T
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47

Dantas, Edilândia Farias, Ana Dolores Santiago de Freitas, Maria do Carmo Catanho Pereira de Lyra, et al. "Biological fixation, transfer and balance of nitrogen in passion fruit (Passiflora edulis Sims) orchard intercropped with different green manure crops." 2019 13, (03) 2019 (2019): 465–71. http://dx.doi.org/10.21475/ajcs.19.13.03.p1559.

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Green manures can replace or supplement mineral fertilization and add organic matter to the soils, ensuring greater sustainability to fruit growing in semiarid regions. Biological fixation, transfer and balance of nitrogen were determined on an irrigated yellow passion fruit orchard (Passiflora edulis Sims) intercropped separately with three cover crops: sunn hemp, Crotalaria juncea (L.); pigeon pea, Cajanus cajan (L.) Mill; and jack bean, Canavalia ensiformis (L.) DC. In a fourth treatment, legumes were not planted, but spontaneous vegetation was left to grow freely. The legumes were croped f
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48

Regus, John U., Kelsey A. Gano, Amanda C. Hollowell, and Joel L. Sachs. "Efficiency of partner choice and sanctions in Lotus is not altered by nitrogen fertilization." Proceedings of the Royal Society B: Biological Sciences 281, no. 1781 (2014): 20132587. http://dx.doi.org/10.1098/rspb.2013.2587.

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Eukaryotic hosts must exhibit control mechanisms to select against ineffective bacterial symbionts. Hosts can minimize infection by less-effective symbionts (partner choice) and can divest of uncooperative bacteria after infection (sanctions). Yet, such host-control traits are predicted to be context dependent, especially if they are costly for hosts to express or maintain. Legumes form symbiosis with rhizobia that vary in symbiotic effectiveness (nitrogen fixation) and can enforce partner choice as well as sanctions. In nature, legumes acquire fixed nitrogen from both rhizobia and soils, and
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Dolgikh, Alexandra V., Elizaveta S. Rudaya, and Elena A. Dolgikh. "Identification of BELL Transcription Factors Involved in Nodule Initiation and Development in the Legumes Pisum sativum and Medicago truncatula." Plants 9, no. 12 (2020): 1808. http://dx.doi.org/10.3390/plants9121808.

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Single three-amino acid loop extension (TALE) homeodomain proteins, including the KNOTTED-like (KNOX) and BEL-like (BELL) families in plants, usually work as heterodimeric transcription factor complexes to regulate different developmental processes, often via effects on phytohormonal pathways. Nitrogen-fixing nodule formation in legumes is regulated by different families of homeodomain transcription factors. Whereas the role of KNOX transcription factors in the control of symbiosis was studied early, BELL transcription factors have received less attention. Here, we report the identification an
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van Velzen, Robin, Rens Holmer, Fengjiao Bu, et al. "Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses." Proceedings of the National Academy of Sciences 115, no. 20 (2018): E4700—E4709. http://dx.doi.org/10.1073/pnas.1721395115.

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Nodules harboring nitrogen-fixing rhizobia are a well-known trait of legumes, but nodules also occur in other plant lineages, with rhizobia or the actinomycete Frankia as microsymbiont. It is generally assumed that nodulation evolved independently multiple times. However, molecular-genetic support for this hypothesis is lacking, as the genetic changes underlying nodule evolution remain elusive. We conducted genetic and comparative genomics studies by using Parasponia species (Cannabaceae), the only nonlegumes that can establish nitrogen-fixing nodules with rhizobium. Intergeneric crosses betwe
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