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Journal articles on the topic 'Non-coding RNA'

Author: Grafiati

Published: 4 June 2021

Last updated: 25 July 2025

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1

Mattick, John S., and Igor V. Makunin. "Non-coding RNA." Human Molecular Genetics 15, suppl_1 (2006): R17—R29. http://dx.doi.org/10.1093/hmg/ddl046.

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2

TAKAHASHI, Kenji, Yohei KITANO, Yuichi MAKINO, and Masakazu HANEDA. "Long non-coding RNAs in pancreatic cancer." Suizo 31, no. 1 (2016): 32–40. http://dx.doi.org/10.2958/suizo.31.32.

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3

Diederichs, Sven. "Non-coding RNA and disease." RNA Biology 9, no. 6 (2012): 701–2. http://dx.doi.org/10.4161/rna.20972.

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4

Ma, Xiaoxia, Chaogang Shao, Yongfeng Jin, Huizhong Wang, and Yijun Meng. "Long non-coding RNAs." RNA Biology 11, no. 4 (2014): 373–90. http://dx.doi.org/10.4161/rna.28725.

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5

Kazimierczyk, Marek, and Jan Wrzesinski. "Long Non-Coding RNA Epigenetics." International Journal of Molecular Sciences 22, no. 11 (2021): 6166. http://dx.doi.org/10.3390/ijms22116166.

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Long noncoding RNAs exceeding a length of 200 nucleotides play an important role in ensuring cell functions and proper organism development by interacting with cellular compounds such as miRNA, mRNA, DNA and proteins. However, there is an additional level of lncRNA regulation, called lncRNA epigenetics, in gene expression control. In this review, we describe the most common modified nucleosides found in lncRNA, 6-methyladenosine, 5-methylcytidine, pseudouridine and inosine. The biosynthetic pathways of these nucleosides modified by the writer, eraser and reader enzymes are important to underst

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6

Jovanovic, Ivan, Maja Zivkovic, Snezana Jesic, and Aleksandra Stankovic. "Non‐coding RNA and cholesteatoma." Laryngoscope Investigative Otolaryngology 7, no. 1 (2022): 60–66. http://dx.doi.org/10.1002/lio2.728.

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7

Ren, Bing. "Enhancers make non-coding RNA." Nature 465, no. 7295 (2010): 173–74. http://dx.doi.org/10.1038/465173a.

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8

Presutti, Carlo, Jessica Rosati, Sara Vincenti, and Sergio Nasi. "Non coding RNA and brain." BMC Neuroscience 7, Suppl 1 (2006): S5. http://dx.doi.org/10.1186/1471-2202-7-s1-s5.

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9

Panni, Simona, Ruth C. Lovering, Pablo Porras, and Sandra Orchard. "Non-coding RNA regulatory networks." Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1863, no. 6 (2020): 194417. http://dx.doi.org/10.1016/j.bbagrm.2019.194417.

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10

Stower, Hannah. "Long non-coding RNA stability." Nature Reviews Genetics 13, no. 5 (2012): 298. http://dx.doi.org/10.1038/nrg3234.

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11

Ciccodicola, Alfredo, Maria Rosaria Ambrosio, Margherita Scarpato, and Valerio Costa. "Non-coding RNA in Neurodegeneration." Current Geriatrics Reports 1, no. 4 (2012): 219–28. http://dx.doi.org/10.1007/s13670-012-0023-4.

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12

Beylerli, O. A., and I. F. Gareev. "Long non-coding RNA — perspectives?" Profilakticheskaya meditsina 23, no. 2 (2020): 124. http://dx.doi.org/10.17116/profmed202023021124.

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13

Adyan, Aram, Evgeny Bezsonov, Eugene Grebenshchikov, Alexandr Grinev, and Denis Bogomolov. "Non-coding RNA and Atherosclerosis." Gene Expression 000, no. 000 (2024): 000. http://dx.doi.org/10.14218/ge.2023.00117.

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14

Firoozeh, Chamandoosti. "About non – coding RNAs." International Journal of Environmental & Agriculture Research 4, no. 4 (2018): 17–27. https://doi.org/10.5281/zenodo.1238784.

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<strong><em>Abstract</em></strong><strong>—</strong> <em>The central dogma of molecular biology states that DNA makes RNA and RNA makes protein. Recently, a large number of RNAs have been identified in animal and plants that have little or no protein – coding potential. Such RNA molecules have been discovered by the extensive applications of high – throughput sequencing technology. Non – coding RNAs (ncRNAs), which comprise a significant output of the genomes of prokaryotes and especially eukaryotes, are increasingly implicated in the molecular mechanisms that are being

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15

Frith, Martin C., Timothy L. Bailey, Takeya Kasukawa, et al. "Discrimination of Non-Protein-Coding Transcripts from Protein-Coding mRNA." RNA Biology 3, no. 1 (2006): 40–48. http://dx.doi.org/10.4161/rna.3.1.2789.

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16

Luykx, Giuliani, Giuliani, and Veldink. "Coding and Non-Coding RNA Abnormalities in Bipolar Disorder." Genes 10, no. 11 (2019): 946. http://dx.doi.org/10.3390/genes10110946.

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The molecular mechanisms underlying bipolar disorder (BPD) have remained largely unknown. Postmortem brain tissue studies comparing BPD patients with healthy controls have produced a heterogeneous array of potentially implicated protein-coding RNAs. We hypothesized that dysregulation of not only coding, but multiple classes of RNA (coding RNA, long non-coding (lnc) RNA, circular (circ) RNA, and/or alternative splicing) underlie the pathogenesis of BPD. Using non-polyadenylated libraries we performed RNA sequencing in postmortem human medial frontal gyrus tissue from BPD patients and healthy co

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17

Liu, Xiu-Fen, Ji-Long Hao, Tian Xie, et al. "The BRAF activated non-coding RNA: A pivotal long non-coding RNA in human malignancies." Cell Proliferation 51, no. 4 (2018): e12449. http://dx.doi.org/10.1111/cpr.12449.

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18

Paschoal, Alexandre Rossi, Vinicius Maracaja-Coutinho, João Carlos Setubal, Zilá Luz Paulino Simões, Sergio Verjovski-Almeida, and Alan Mitchell Durham. "Non-coding transcription characterization and annotation." RNA Biology 9, no. 3 (2012): 274–82. http://dx.doi.org/10.4161/rna.19352.

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19

Heueis, Nona, Michael-Paul Vockenhuber, and Beatrix Suess. "Small non-coding RNAs in streptomycetes." RNA Biology 11, no. 5 (2014): 464–69. http://dx.doi.org/10.4161/rna.28262.

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20

蔡, 雅莉. "Research Progress of Long Non-Coding RNA." International Journal of Psychiatry and Neurology 05, no. 03 (2016): 54–58. http://dx.doi.org/10.12677/ijpn.2016.53009.

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21

GAO, Yuan, Ning HUI, and Shan-rong LIU. "Long non-coding RNA: research progress." Academic Journal of Second Military Medical University 31, no. 7 (2011): 790–94. http://dx.doi.org/10.3724/sp.j.1008.2011.00790.

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22

Hauptman, Nina, and Damjan Glavač. "Long Non-Coding RNA in Cancer." International Journal of Molecular Sciences 14, no. 3 (2013): 4655–69. http://dx.doi.org/10.3390/ijms14034655.

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23

Micheel, Julia, Aram Safrastyan, and Damian Wollny. "Advances in Non-Coding RNA Sequencing." Non-Coding RNA 7, no. 4 (2021): 70. http://dx.doi.org/10.3390/ncrna7040070.

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Non-coding RNAs (ncRNAs) comprise a set of abundant and functionally diverse RNA molecules. Since the discovery of the first ncRNA in the 1960s, ncRNAs have been shown to be involved in nearly all steps of the central dogma of molecular biology. In recent years, the pace of discovery of novel ncRNAs and their cellular roles has been greatly accelerated by high-throughput sequencing. Advances in sequencing technology, library preparation protocols as well as computational biology helped to greatly expand our knowledge of which ncRNAs exist throughout the kingdoms of life. Moreover, RNA sequenci

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24

Anastasiadou, Eleni, Leni S. Jacob, and Frank J. Slack. "Non-coding RNA networks in cancer." Nature Reviews Cancer 18, no. 1 (2017): 5–18. http://dx.doi.org/10.1038/nrc.2017.99.

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25

O'Gorman, William, Kon Yew Kwek, Benjamin Thomas, and Alexandre Akoulitchev. "Non-coding RNA in transcription initiation." Biochemical Society Symposia 73 (January 1, 2006): 131–40. http://dx.doi.org/10.1042/bss0730131.

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Diverse classes of non-coding RNAs, including snRNAs (small nuclear RNAs), play fundamental regulatory roles in gene expression. For example, 7SK RNA and the components of the splicing apparatus U1–U6 snRNAs are implicated in the regulation of transcriptional elongation. The first evidence for the involvement of RNA in the regulation of transcriptional initiation is now emerging. TFIIH (transcription factor IIH), a general transcription initiation factor, appears to associate specifically with U1 snRNA, a core splicing component. Reconstituted transcription in vitro demonstrates an increase in

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26

Glasgow, Arlene M. A., Chiara De Santi, and Catherine M. Greene. "Non-coding RNA in cystic fibrosis." Biochemical Society Transactions 46, no. 3 (2018): 619–30. http://dx.doi.org/10.1042/bst20170469.

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Non-coding RNAs (ncRNAs) are an abundant class of RNAs that include small ncRNAs, long non-coding RNAs (lncRNA) and pseudogenes. The human ncRNA atlas includes thousands of these specialised RNA molecules that are further subcategorised based on their size or function. Two of the more well-known and widely studied ncRNA species are microRNAs (miRNAs) and lncRNAs. These are regulatory RNAs and their altered expression has been implicated in the pathogenesis of a variety of human diseases. Failure to express a functional cystic fibrosis (CF) transmembrane receptor (CFTR) chloride ion channel in

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27

Zhang, J., X. Hao, M. Yin, T. Xu, and F. Guo. "Long non-coding RNA in osteogenesis." Bone & Joint Research 8, no. 2 (2019): 73–80. http://dx.doi.org/10.1302/2046-3758.82.bjr-2018-0074.r1.

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28

Yamashita, Akira, Ryo Kariyazono, and Yoshinori Watanabe. "Meiotic pairing by non‐coding RNA?" EMBO reports 13, no. 9 (2012): 766. http://dx.doi.org/10.1038/embor.2012.124.

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29

Hofmann, Patrick, and Reinier A. Boon. "Non-coding RNA enhances cardiac development." Journal of Molecular and Cellular Cardiology 76 (November 2014): 205–7. http://dx.doi.org/10.1016/j.yjmcc.2014.09.005.

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30

Walter, Nils G. "Editorial for “Non-coding RNA methods”." Methods 63, no. 2 (2013): 93–94. http://dx.doi.org/10.1016/j.ymeth.2013.09.008.

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31

Matrajt, Mariana. "Non-coding RNA in apicomplexan parasites." Molecular and Biochemical Parasitology 174, no. 1 (2010): 1–7. http://dx.doi.org/10.1016/j.molbiopara.2010.06.002.

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32

Ayers, Duncan, and Charles Scerri. "Non-coding RNA influences in dementia." Non-coding RNA Research 3, no. 4 (2018): 188–94. http://dx.doi.org/10.1016/j.ncrna.2018.09.002.

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33

Flintoft, Louisa. "Non-coding RNA changes enzyme specificity." Nature Reviews Genetics 14, no. 5 (2013): 302. http://dx.doi.org/10.1038/nrg3485.

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34

CHEN, LingLing, ShanShan FENG, ZuSen FAN, et al. "Progress in non-coding RNA research." SCIENTIA SINICA Vitae 49, no. 12 (2019): 1573–605. http://dx.doi.org/10.1360/ssv-2019-0179.

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35

Tomaru, Yasuhiro, and Yoshihide Hayashizaki. "Cancer research with non-coding RNA." Cancer Science 97, no. 12 (2006): 1285–90. http://dx.doi.org/10.1111/j.1349-7006.2006.00337.x.

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36

Le Bot, Nathalie. "Large non-coding RNA in pluripotency." Nature Cell Biology 15, no. 5 (2013): 449. http://dx.doi.org/10.1038/ncb2760.

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37

Herron, Todd Joseph. "Stiffness triggers non-coding RNA pathology." Nature Biomedical Engineering 3, no. 2 (2019): 85–86. http://dx.doi.org/10.1038/s41551-019-0352-0.

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38

Romano, Giulia, Dario Veneziano, Mario Acunzo, and Carlo M. Croce. "Small non-coding RNA and cancer." Carcinogenesis 38, no. 5 (2017): 485–91. http://dx.doi.org/10.1093/carcin/bgx026.

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39

Li, Yi, Gang Li, Xiangyang Guo, Haochen Yao, Guoqing Wang, and Chong Li. "Non-coding RNA in bladder cancer." Cancer Letters 485 (August 2020): 38–44. http://dx.doi.org/10.1016/j.canlet.2020.04.023.

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40

Saxena, Alka, and Piero Carninci. "Long non-coding RNA modifies chromatin." BioEssays 33, no. 11 (2011): 830–39. http://dx.doi.org/10.1002/bies.201100084.

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41

Schaefer, Jeremy, and Trevor Schnupp. "Non-coding RNA regulation of immunity." Journal of Immunology 200, no. 1_Supplement (2018): 167.9. http://dx.doi.org/10.4049/jimmunol.200.supp.167.9.

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Abstract Non-coding RNAs (ncRNAs) comprise a diverse range of biologically functional RNA species that include long ncRNAs (lncRNA) and short ncRNAs such as piwi-interacting RNAs (piRNA) and microRNAs (miRNA). These ncRNAs are capable of regulating gene expression via distinct mechanisms depending on their structure---miRNAs bind specific messenger RNAs (mRNA) to block translation while lncRNAs tend to bind chromatin to modify chromatin states to interfere with gene expression. NcRNAs have been identified in numerous diseases as having altered expression. To further elucidate the role of ncRNA

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42

Aurilia, Cinzia, Gaia Palmini, Simone Donati, Irene Falsetti, Teresa Iantomasi, and Maria Luisa Brandi. "Long non coding RNA in osteoporosis." International Journal of Bone Fragility 2, no. 3 (2022): 102–5. http://dx.doi.org/10.57582/ijbf.220203.102.

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Osteoporosis (OP) is the most common skeletal disease, caused by a lack of balance between osteoclast and osteoblast activity. This results in erosion overriding the deposition of new bone matrix, consequently leading to low-quality bone and an increased risk of incurring fragility fractures. Dual energy X-ray absorptiometry is the gold standard for the diagnosis of OP, while anti-osteoporotic drugs are the gold standard for its treatment. However, due to limitations to their use, researchers have turned to epigenetics as a substantial source of molecules that could potentially be used as diag

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43

Richard Boland, C. "Non-coding RNA: It’s Not Junk." Digestive Diseases and Sciences 62, no. 5 (2017): 1107–9. http://dx.doi.org/10.1007/s10620-017-4506-1.

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44

Goodrich, James A., and Jennifer F. Kugel. "Non-coding-RNA regulators of RNA polymerase II transcription." Nature Reviews Molecular Cell Biology 7, no. 8 (2006): 612–16. http://dx.doi.org/10.1038/nrm1946.

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45

Eddy, Sean R. "Non–coding RNA genes and the modern RNA world." Nature Reviews Genetics 2, no. 12 (2001): 919–29. http://dx.doi.org/10.1038/35103511.

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46

Yang, Yun, XinXin Zhou, and YongFeng Jin. "ADAR-mediated RNA editing in non-coding RNA sequences." Science China Life Sciences 56, no. 10 (2013): 944–52. http://dx.doi.org/10.1007/s11427-013-4546-5.

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47

Shome, Sayane, and Robert L. Jernigan. "Functional Annotation of Coding and Non-Coding RNA in Non-Model Organisms." Biophysical Journal 118, no. 3 (2020): 461a. http://dx.doi.org/10.1016/j.bpj.2019.11.2564.

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48

Abendroth, Ulrike, Cornelius Schmidtke, and Ulla Bonas. "Small non-coding RNAs in plant-pathogenicXanthomonasspp." RNA Biology 11, no. 5 (2014): 457–63. http://dx.doi.org/10.4161/rna.28240.

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49

Hekimoglu, Betül, and Leonie Ringrose. "Non-coding RNAs in Polycomb/Trithorax regulation." RNA Biology 6, no. 2 (2009): 129–37. http://dx.doi.org/10.4161/rna.6.2.8178.

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50

IWAKIRI, Junichi, and Michiaki HAMADA. "Computational Approaches for Long Non-coding RNA Research." Seibutsu Butsuri 56, no. 4 (2016): 217–20. http://dx.doi.org/10.2142/biophys.56.217.

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