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Dissertations / Theses on the topic 'Oligonucleotide Oligonucleotide'

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1

Scotson, James L. "Understanding oligonucleotide synthesis." Thesis, University of Huddersfield, 2016. http://eprints.hud.ac.uk/id/eprint/32090/.

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Oligonucleotides are synthesised almost exclusively via the solid-supported phosphoramidite method. However popular this method may be, the expensive reagents used in large excess during the synthesis as well as the large amounts of organic and aqueous solvents and purification steps makes the scale-up of oligonucleotide synthesis costly and possibly harmful to the environment. The therapeutic use of anti-sense oligonucleotides (ASOs) is hindered by their susceptibility to nuclease catalysed hydrolysis and to overcome this problem ASOs have been modified commonly by the introduction of a phosp
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2

Barnekow, Frank. "Darstellung einzelsträngiger DNA-Polymeraseprodukte über eine kovalente Membrananbindung und deren enzymatische Umsetzungen." [S.l. : s.n.], 1998. http://deposit.ddb.de/cgi-bin/dokserv?idn=957430485.

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3

Bauer, Oliver. "Technology development for oligonucleotide fingerprinting applying multiplexed PNA hybridizations and MALDI-TOF mass spectrometry detection /." [S.l. : s.n.], 2003. http://www.diss.fu-berlin.de/2003/326/index.html.

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4

Torres, Adrian Gabriel. "MicroRNA targeting with oligonucleotide analogues." Thesis, University of Cambridge, 2012. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.610040.

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5

Steck, Anna-Lena [Verfasser]. "Oligonucleotide-modified Nuclotides / Anna-Lena Steck." Konstanz : Bibliothek der Universität Konstanz, 2013. http://d-nb.info/1058325981/34.

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6

Luchi, Daniela de. "Crystallographic study on oligonucleotide coiled-coils." Doctoral thesis, Universitat Politècnica de Catalunya, 2008. http://hdl.handle.net/10803/6457.

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En la presente tesis doctoral se han realizado estudios estructurales de DNA. Estudios previos han demostrado que los coiled-coils de d(ATATATATATAT) y d(ATATATATAT) tienen unos parámetros geométricos muy diferentes. El objetivo de esta tesis es aclarar las propiedades de los coiled-coils.<br/>Con esta finalidad se han estudiado por cristalografía de Rayos X oligonucleótidos con diferentes secuencias y con extremos cohesivos que fijen la geometría de los coiled-coils. Se han utilizado oligonucleótidos con la secuencia d(CG)n(AT)m o (AT)m(CG)n y otros semejantes. En la mayor parte de ellos n=1
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7

Pritchard, Clare Elizabeth. "Studies in solid supported oligonucleotide synthesis." Thesis, University of Edinburgh, 1990. http://hdl.handle.net/1842/11282.

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8

Wolfe, Justin Mahoney. "Peptide conjugation to enhance oligonucleotide delivery." Thesis, Massachusetts Institute of Technology, 2018. http://hdl.handle.net/1721.1/118278.

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Thesis: Ph. D. in Biological Chemistry, Massachusetts Institute of Technology, Department of Chemistry, 2018.<br>Cataloged from PDF version of thesis.<br>Includes bibliographical references.<br>The intracellular delivery of functional macromolecules remains an outstanding challenge in biomedicine. While small molecules can diffuse through the plasma membrane, many large therapeutic molecules are not internalized to an appreciable extent. One strategy to improve cell uptake involves linking the molecule of interest to a cell-penetrating peptide (CPP). CPPs are widely employed to enhance macromo
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9

Razumovitch, Julia. "Hybridization of surface-tethered oligonucleotide brushes /." [S.l.] : [s.n.], 2009. http://edoc.unibas.ch/diss/DissB_8744.

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10

Douglas, Andrew Graham Lim. "Oligonucleotide-based therapies for neuromuscular disease." Thesis, University of Oxford, 2015. http://ora.ox.ac.uk/objects/uuid:d14706a3-c436-46ff-87c4-40bbbad6dc01.

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11

Brandsch, Thomas. "Untersuchungen zur Selbstreplikation von Oligonucleotiden an Oberflächen." [S.l.] : [s.n.], 2003. http://deposit.ddb.de/cgi-bin/dokserv?idn=969698585.

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12

Schöneborn, Holger. "Selbstreplizierende Oligonucleotide zum Einfluss der Matrizenlänge bei kinetischen Untersuchungen auf der Basis des Fluoreszenz-Resonanz-Energie-Transfers /." [S.l.] : [s.n.], 2002. http://deposit.ddb.de/cgi-bin/dokserv?idn=964541297.

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13

Siegert, Carsten. "Chemische und enzymatische Synthese modifizierter Nukleinsäuren für die Analytik mit Hilfe der MALDI-TOF-Massenspektrometrie." [S.l. : s.n.], 1999. http://deposit.ddb.de/cgi-bin/dokserv?idn=958300763.

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14

Feyerabend, Sven. "Darstellung von Konjugaten aus hexahistidinmodifizierter bakterieller alkalischer Phosphatase und NTA-funktionalisierten Oligonukleotiden." [S.l. : s.n.], 1999. http://deposit.ddb.de/cgi-bin/dokserv?idn=957586213.

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15

Hausch, Felix. "Multifunktionale Nukleinsäure-Konjugate zur Selektion von katalytischen Oligonukleotiden." [S.l. : s.n.], 2000. http://www.diss.fu-berlin.de/2000/75/index.html.

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16

Hohlfeld, Andreas. "[Alpha]-Hydroxy-2-nitrobenzylphosphonat-modifizierte [Alpha-Hydroxy-2-nitrobenzylphosphonat-modifizierte] Oligonucleotide Synthese, Eigenschaften und neue Synthesekonzepte /." [S.l. : s.n.], 2005. http://deposit.ddb.de/cgi-bin/dokserv?idn=974524123.

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17

Schliepe, Jürgen. "Synthese von metallmodifizierten Oligonucleotiden mit genregulatorischen Eigenschaften." [S.l. : s.n.], 1999. http://deposit.ddb.de/cgi-bin/dokserv?idn=966515021.

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18

Gräsl, Sonja. "Synthese C8-Arylamin-modifizierter 2'-Desoxyguanosinderivate und deren Einbau in Oligonucleotide." [S.l. : s.n.], 2005. http://deposit.ddb.de/cgi-bin/dokserv?idn=974451452.

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19

Engstrom, Julia U. "Mammalian cell cycle regulates oligonucleotide-mediated repair." Access to citation, abstract and download form provided by ProQuest Information and Learning Company; downloadable PDF file, 219 p, 2008. http://proquest.umi.com/pqdweb?did=1481658501&sid=9&Fmt=2&clientId=8331&RQT=309&VName=PQD.

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20

May, Jonathan Paul. "Development of oligonucleotide probes for genetic analysis." Thesis, University of Southampton, 2003. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.269932.

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21

Lin, Zhaoru. "Characterisation of antisense oligonucleotide-stimulated ribosomal frameshifting." Thesis, University of Cambridge, 2011. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.609380.

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22

Reshat, Reshat. "Evaluating the genotoxic potential of oligonucleotide pharmaceuticals." Thesis, Imperial College London, 2012. http://hdl.handle.net/10044/1/10928.

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According to regulatory guidelines, routine genotoxicity tests are not appropriate for biotechnology derived pharmaceuticals, including oligonucleotide based therapeutics, as they are not expected to interact with genomic DNA. However, reports of oligonucleotides capable of binding duplex DNA in a sequence specific manner to form triple-helix (triplex) or displacement-loop (D-loop) structures that in turn cause mutation have raised concern. The European Medicines Agency (EMA) has questioned the capability of antisense oligonucleotide (ASO) therapeutics to form such structures at genomic DNA. A
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23

Campàs, i. Homs Mònica. "Functional oligonucleotide recognition nanomodules for electrochemical DNA biosensors." Doctoral thesis, Universitat Rovira i Virgili, 2002. http://hdl.handle.net/10803/8509.

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The goal of this thesis has been to design, characterise and optimise an electrochemical DNA sensor array. In order to investigate the oligonucleotide probe immobilisation and the hybridisation detection, preliminary experiments with an easy system were performed. This system demonstrated the suitability of oligonucleotide self-assembled monolayers (SAMs) on gold surfaces as immobilisation method. Due to the rapid DNA sensor development towards DNA arrays, a modified strategy was proposed. This strategy was based on the site-directed electrodeposition of biorecognition nanomodules on electrode
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24

Disterer, Petra. "Oligonucleotide-mediated gene editing of Apolipoprotein A-I." Thesis, University College London (University of London), 2008. http://discovery.ucl.ac.uk/1444267/.

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Apolipoprotein A-I (ApoA-I) is the major protein constituent of high density lipoprotein (HDL) and controls reverse cholesterol transport, an important process in preventing atherosclerosis. A natural point mutation, ApoA-lMiiano (ApoA-Im) enhances the atheroprotective potential of HDL. Here, I attempt to introduce this specific modification into the genome of mammalian cells using the gene therapy strategy of oligonucleotide-mediated gene editing. I showed successful APOA-I gene editing in recombinant Chinese hamster ovary (CHO-AI) and human hepatocellular carcinoma (HepG2) cells by polymeras
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25

Arteaga-Salas, Jose Manuel. "Statistical treatment of spatial flaws in oligonucleotide microarrays." Thesis, University of Essex, 2009. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.510491.

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26

Tjaden, Brian C. "Computational methods for transcription anlysis using oligonucleotide microarrays /." Thesis, Connect to this title online; UW restricted, 2003. http://hdl.handle.net/1773/6907.

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27

Eichelsheim, Tanja. "Oligonucleotide based ligands in homogeneous transition metal catalysis." Thesis, University of St Andrews, 2012. http://hdl.handle.net/10023/3168.

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Catalysis plays an important part in our society. Numerous transition metal catalysts have been developed which can convert many different substrates in a wide range of reactions. Catalysis also plays an important role in nature and therefore special catalysts, enzymes, have evolved over time. Enzymes are tremendously efficient giving high yields and selectivities both regio and chemical but have a limited substrate and reaction scope. It was speculated that by combining the two, an ideal catalyst can be obtained. We planned to achieve this by introducing a transition metal, the catalytic cent
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28

Regberg, Jakob. "Cell-penetrating peptide based nanocomplexes for oligonucleotide delivery." Doctoral thesis, Stockholms universitet, Institutionen för neurokemi, 2016. http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-133794.

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Oligonucleotide-based drugs hold great promise for the treatment of many types of diseases, ranging from genetic disorders to viral infections and cancer. The problem is that efficient delivery across the cell membrane is required for oligonucleotides to have their desired effect. Cell-penetrating peptides (CPPs) provide a solution to this problem. CPPs are capable of transporting cargoes such as drugs or nucleic acids for gene therapy into the cell, either by covalent conjugation to the cargo or by non-covalent complex formation. This thesis is focused on the development of a class of peptide
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29

Tazioli, Lia Ashley Maria. "Synthetic approaches to novel, Triazole-containing Oligonucleotide analogues." Thesis, Heriot-Watt University, 2010. http://hdl.handle.net/10399/2442.

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The work reported in this thesis focuses on the development of synthetic approaches to prepare novel triazole-containing nucleic acid (TCNA) monomers for subsequent incorporation into oligomers. The triazole moiety was designed to be prepared using “click chemistry”. Initial studies involved development of viable synthetic pathways for preparation of both the required azide component, derived from L-serine methyl ester and the nucleobase-containing alkyne component. The azide has been successfully synthesised from either protected or unprotected L-serine methyl ester by direct diazotransfer em
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30

Wallis, Mark P. "Nucleoside and oligonucleotide approaches towards potential HIV chemotherapies." Thesis, Aston University, 1996. http://publications.aston.ac.uk/10936/.

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The use of oligonucleotides directed against the mRNA of HIV promises site-specific inhibition of viral replication. In this work, the effect of aralkyl substituents on oligonucleotide duplex stability was studied using model oligonucleotide sequences in an attempt to improve targeting of oligonucleotides to viral mRNA. Arakyl-substituted oligonucleotides were made by solid phase synthesis using either the appropriate aralkyl-substituted phosphoramidite or by post-synthetic substitution of a pentafluorophenoxy substituent by N-methylphenethylamine. The presence of phenethyl or benzoyl substitu
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31

Turner, Gillian. "A new protecting group strategy for oligonucleotide synthesis." Thesis, University of Edinburgh, 1990. http://hdl.handle.net/1842/13149.

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This thesis describes the development of the various methods available for the synthesis of deoxyoligoribonucleotides. The use of the 2,2-bis (4-nitro-phenyl)ethyl group was investigated, mainly as a 5'-hydroxyl protecting group on 2'-deoxyribonucleotides, but also as a base protecting group for the O4-function of thymidinc and the Nc-exocyclic amine of adenosine. The deprotection conditions required for the removal of this group and its subsequent use in the synthesis of 2'-deoxyribonucleotides utilising phosphoramidite methodology arc described. An investigation, by 81P n.m.r., of the coupli
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32

Udall, Joshua, Lex Flagel, Foo Cheung, et al. "Spotted cotton oligonucleotide microarrays for gene expression analysis." BioMed Central, 2007. http://hdl.handle.net/10150/610000.

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BACKGROUND:Microarrays offer a powerful tool for diverse applications plant biology and crop improvement. Recently, two comprehensive assemblies of cotton ESTs were constructed based on three Gossypium species. Using these assemblies as templates, we describe the design and creation and of a publicly available oligonucleotide array for cotton, useful for all four of the cultivated species.RESULTS:Synthetic oligonucleotide probes were generated from exemplar sequences of a global assembly of 211,397 cotton ESTs derived from >50 different cDNA libraries representing many different tissue types a
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33

Haker, Ute. "Modifizierung von Silizium-Oberflächen zur Immobilisierung von Biomolekülen." [S.l. : s.n.], 2000. http://deposit.ddb.de/cgi-bin/dokserv?idn=959565698.

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34

Kodo, Y. "Synthesis of oligonucleotides and genes." Thesis, University of Oxford, 1988. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.233499.

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35

Peng, Chang Geng. "Synthesis, characterizations and applications of C2'-modified oligonucleotide analogues." Thesis, McGill University, 2007. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=103030.

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During the past two decades, oligonucleotide analogues have drawn considerable attention as potential therapeutic and diagnostic agents. Gene silencing through "RNA interference" (siRNA) or the more mature "antisense" technology (AONs) have proven to be powerful tools for studying gene functions. Chemical modifications of these compounds are generally required to improve their "drug-like" properties such as potency, selectivity and delivery, particularly in the development of oligonucleotide-based therapeutics. Aptamers are another emerging class of oligonucleotide therapeutics and diagnostics
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36

Brunner, Jens. "Metallkomplex-funktionalisierte Oligonucleotide und Peptidnucleinsäuren für die DNA-Sequenzerkennung." [S.l. : s.n.], 2004. http://deposit.ddb.de/cgi-bin/dokserv?idn=973945338.

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37

Chen, Zhongxue. "Probe-level data analysis for high-density oligonucleotide arrays." Ann Arbor, Mich. : ProQuest, 2007. http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqdiss&rft_dat=xri:pqdiss:3258524.

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Thesis (Ph.D. in Statistical Science)--S.M.U., 2007.<br>Title from PDF title page (viewed Mar. 18, 2008). Source: Dissertation Abstracts International, Volume: 68-04, Section: B, page: 2429. Adviser: Monnie McGee. Includes bibliographical references.
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38

Crawford, Victoria. "The synthesis and study of cell-penetrating oligonucleotide probes." Thesis, University of Strathclyde, 2009. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.510903.

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39

Stevens, Lee Anthony. "Relationship between solid support structure and oligonucleotide synthesis performance." Thesis, University of Nottingham, 2008. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.519427.

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40

Battaggia, S. "Approaches toward the synthesis of oligonucleotide 2'0,3'0-cyclic phosphates." Thesis, Queen's University Belfast, 2003. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.273172.

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41

Hamma, Tomoko. "Biophysical and biochemical studies of anti-HIV oligonucleotide analogs." Available to US Hopkins community, 2002. http://wwwlib.umi.com/dissertations/dlnow/3068163.

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42

Vilela, Patrick. "Inorganic nanoparticle-oligonucleotide conjugates for bio-sensing and therapeutics." Thesis, University of Southampton, 2017. https://eprints.soton.ac.uk/426884/.

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In recent years, advances in conjugation techniques have allowed for the development of a vast range of hybrid materials nanomaterials with biomolecules. The use of hybrid nanomaterials has improved the imaging, treatment and diagnostics of specific biological processes. In this project, the main aim was to explore the uses of nanoparticle-oligonucleotide conjugates for biomedical applications. Gold nanoparticle-DNA probes for the intracellular detection of Vimentin mRNA were synthesized. These probes showed great target specificity and biocompatibility. Additionally, by means of light sheet m
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43

Leung, Ka Ho. "Oligonucleotide-based lunimescent detection platform utilizing iridium (III) complexes." HKBU Institutional Repository, 2015. https://repository.hkbu.edu.hk/etd_oa/163.

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Luminescent transition metal complexes have arisen as viable alternatives to organic dyes for sensory applications due to their notable advantages. This thesis aimed to synthesize different kinds of Ir(III) complexes, explore their interactions with DNAs and investigate their application for the construction of label-free oligonucleotide-based sensing platforms. A series of Ir(III) complexes incorporating a variety of C^N and N^N donor ligands were synthesized and were shown to exhibit G-quadruplex-selective binding properties via emission titration, UV/vis titration, fluorescence resonance en
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44

Durand, Adeline. "Synthesis of oligonucleotide analogues for use in DNA nanostructures." Thesis, University of Southampton, 2010. https://eprints.soton.ac.uk/173975/.

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Thanks to its ability to form duplexes through selective base-pair recognition, DNA is a unique material for orderly self-assembled construction at the nanoscale. To develop a nanotechnology platform on a grid of addressable molecular building blocks using DNA node structures, DNA complexes need to be fixed onto surfaces. To fulfil this requirement on lipid membranes, phosphoramidites monomers modified with a cholesterol moiety and a spacer unit were synthesised. The hydrophobic spacer provides separation between the hydrophobic cholesterol moiety and the phosphate backbone of the DNA strand.
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45

Ferrier, David Christopher. "Nucleic acid detection using oligonucleotide cross-linked polymer composites." Thesis, University of Edinburgh, 2017. http://hdl.handle.net/1842/28944.

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There has been much interest in recent years about the potential of microRNA as a new source of biomarkers for the diagnosis of disease. The delivery of new diagnostic tools based on this potential has been limited by shortcomings in current microRNA detection techniques. This thesis explores the development of a new method of microRNA detection through the incorporation of conductive particles into oligonucleotide-functionalised polymers to form oligonucleotide cross-linked polymer composites. Such composites could provide a simple, rapid, and low-cost means of microRNA detection that could b
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46

Rodier, Denise N. "Degenerate Oligonucleotide Primed-PCR: Thermalcycling Modifications and Comparison Studies." VCU Scholars Compass, 2006. http://scholarscompass.vcu.edu/etd/1496.

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Degenerate Oligonucleotide Primed-PCR (DOP-PCR) can potentially enhance analysis of low copy number DNA samples. Theoretically, this procedure replicates fragments of the genome that can then be used for downstream multiplex STR analysis. The objective of this study is to optimize DOP-PCR by examining ramplelongation times and cycle numbers in the non-specific amplification portion of DOP-PCR, and by modifying the degenerate primer. Additionally, other methods such as Multiple Displacement Amplification (MDA) and Low Copy Number PCR (LCN PCR) were examined for their ability to create accurate
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47

Patel, Ramila. "Delivery and stability of antisense oligonucleotide conjugates in vitro." Thesis, Aston University, 1998. http://publications.aston.ac.uk/10983/.

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The aim of this project was to study the delivery of ODNs to macrophages and to assess the stability of two ODN conjugates, in vitro. The first conjugate aimed to improve uptake of ODNs via mannose receptor mediated delivery, the second investigated the improved delivery of ODN conjugates via non-specific lipophilic interaction with the cell membrane. A mono-mannose phosphoramidite derivative was designed and synthesised and a mono-mannose ODN conjugate synthesised by standard phosphoramidite chemistry. Delivery of this conjugate was enhanced to RAW264.7 and J774 macrophage cell lines via a me
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48

Guterstam, Peter. "Specificity of antisense oligonucleotide derivatives and cellular delivery by cell-penetrating peptides." Doctoral thesis, Stockholm : Department of Neurochemistry, Stockholm University, 2009. http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-31226.

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Diss. (sammanfattning) Stockholm : Stockholms universitet, 2009.<br>At the time of doctoral defense, the following papers were unpublished and had s status as follows: Paper 4: Accepted.Peper 5: In press. Härtill 5 uppsatser.
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49

Williams, Aled. "Developing a new generation of peptidyl-oligonucleotide conjugates with desired biocatalytic properties." Thesis, University of Manchester, 2015. https://www.research.manchester.ac.uk/portal/en/theses/developing-a-new-generation-of-peptidyloligonucleotide-conjugates-with-desired-biocatalytic-properties(a53c3b27-bf03-47d6-b21c-47afb6e96018).html.

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Artificial ribonucleases (ARs) are recognised as a potential strategy to selectively target and cleave biologically significant RNA in cells. However, in order to work as true enzymes they must exhibit catalytic turnover. Many of the reported ARs incorporate metal-containing centres (e.g. dysprosium, copper) in order to induce substantial phosphodiester cleavage, which is not amenable to use in vivo. Therefore, new strategic directions employing metal-independent ARs, such as peptidyl-oligonucleotide conjugates (POCs), need to be investigated. Previous work has shown that poor or non-complemen
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50

Böhme, Dominik. "Oligonucleotide mit Metallionen-vermittelten Basenpaaren Azol-Nucleoside und ein azyklisches Nucleosidanalogon mit dreizähnigem Liganden." Göttingen Sierke, 2007. http://d-nb.info/987521918/04.

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