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Journal articles on the topic 'Oryza granulata'

Author: Grafiati

Published: 5 June 2025

Last updated: 1 August 2025

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1

Zhang, Fen, Haiqi Kang, and Lizhi Gao. "Complete Mitochondrial Genome Assembly of an Upland Wild Rice Species, Oryza granulata and Comparative Mitochondrial Genomic Analyses of the Genus Oryza." Life 13, no. 11 (2023): 2114. http://dx.doi.org/10.3390/life13112114.

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Wild upland rice species, including Oryza granulata, possess unique characteristics that distinguish them from other Oryza species. For instance, O. granulata characteristically has a GG genome and is accordingly classified as a basal lineage of the genus Oryza. Here, we deployed a versatile hybrid approach by integrating Illumina and PacBio sequencing data to generate a high-quality mitochondrial genome (mitogenome) assembly for O. granulata. The mitogenome of O. granulata was 509,311 base pairs (bp) with sixty-seven genes comprising two circular chromosomes, five ribosomal RNA (rRNA) coding

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2

Grover, Anil, and Deepak Pental. "Interrelationships of Oryza species based on electrophoretic patterns of alcohol dehydrogenase." Canadian Journal of Botany 70, no. 2 (1992): 352–58. http://dx.doi.org/10.1139/b92-047.

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Nineteen different species belonging to the genus Oryza were studied for variation in electrophoretic patterns of alcohol dehydrogenase (ADH) extracted from germinating seeds. The ADH patterns were similar for aerobically and anaerobically germinating seeds of all the species. Oryza saliva accessions, both indica and japonica, revealed a five-band pattern on polyacrylamide gels. African cultivated rice, Oryza glaberrima, had an alcohol dehydrogenase pattern similar to that of O. sativa. Oryza perennis complex comprising of Oryza nivara, Oryza rufipogon in Asia, Oryza barthii, Oryza longistamin

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3

Itoh, Akira, Shinta Nakazato, Hiroki Wakabayashi, et al. "Functional kaurene-synthase-like diterpene synthases lacking a gamma domain are widely present in Oryza and related species." Bioscience, Biotechnology, and Biochemistry 85, no. 9 (2021): 1945–52. http://dx.doi.org/10.1093/bbb/zbab127.

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ABSTRACT Various diterpene synthases have been functionally identified in cultivated rice (Oryza sativa). These are the homologs of ent-copalyl diphosphate (ent-CDP) synthase and ent-kaurene synthase (KS) that are responsible for the biosynthesis of gibberellins, diterpenoid phytohormones. We isolated a cDNA encoding full-length OsKSL12, a previously uncharacterized KS like (KSL) enzyme that consists of a β-domain and an α-domain with an active center, but lacks an N-terminal γ-domain. Functional analysis using a bacterial expression system showed that recombinant OsKSL12 converted ent-CDP int

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Luo, Yu, Guang-Lei Lv, Wen-Ting Wu, Shan-Na Chen, and Zai-Quan Cheng. "Analysis of genome expression in the response of Oryza granulata to Xanthomonas oryzae pv oryzae." Molecular Biology Reports 37, no. 2 (2009): 875–92. http://dx.doi.org/10.1007/s11033-009-9694-0.

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5

Pradheep, K., R. Parimalan, K. Joseph John, et al. "A Note on Taxonomy and Genetic Resource Potential of Oryza meyeriana var. indandamanica, a Rare Wild Relative of Rice from the Andaman Islands." Indian Journal of Plant Genetic Resources 36, no. 03 (2023): 422–28. http://dx.doi.org/10.61949/0976-1926.2023.v36i03.11.

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The narrow endemic taxon, Oryza meyeriana (Zoll. & Moritzi) Baill. var. indandamanica (J.L.Ellis) Veldkamp, was often merged with either O. meyeriana (Zoll. & Moritzi) Baill. or O. granulata Nees & Arn. ex Watt. or all three taxa were subsumed to O. meyeriana. A critical analysis of protologues, herbarium specimens and earlier taxonomic works pertaining to these three taxa coupled with the detailed morphological study of germplasm (IC641181) of var. indandamanica, which was originally collected from the Saddle Peak National Park of the North Andaman Island, was undertaken. Morpholo

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Yang, Chunyun, Xinxiang A, Cuifeng Tang, et al. "A TFAIII-Type Transcription Factor OsZFPH Regulating a Signaling Pathway Confers Resistance to Xanthomonas oryzae pv. Oryzae in Rice." Genes 16, no. 3 (2025): 240. https://doi.org/10.3390/genes16030240.

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Background: Rice bacterial leaf blight, caused by the Gram-negative bacterium Xanthomonas oryzae pv. Oryzae (Xoo), significantly impacts rice production. To address this disease, research efforts have focused on discovering and utilizing novel disease-resistant genes and examining their functional mechanisms. Methods and Results: In this study, a variety of bacterial strains were utilized. CX28-3, AX-11, JC12-2, and X10 were isolated from the high-altitude japonica rice-growing region on the Yunnan Plateau. Additionally, PXO61, PXO86, PXO99, and PXO339, sourced from the International Rice Rese

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7

Baset, Abdul, Edward C. Cocking, and Robert P. Finch. "Regeneration of Fertile Plants from Protoplasts of the Wild Rice Species Oryza granulata." Journal of Plant Physiology 141, no. 2 (1993): 245–47. http://dx.doi.org/10.1016/s0176-1617(11)80768-6.

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8

Yang, Rui, Jing Li, Hui Zhang, et al. "Transcriptome Analysis and Functional Identification of Xa13 and Pi‐ta Orthologs in Oryza granulata." Plant Genome 11, no. 3 (2018): 170097. http://dx.doi.org/10.3835/plantgenome2017.11.0097.

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9

Qian, Wei, Song Ge, and De-yuan Hong. "Genetic Diversity in Accessions of Wild Rice Oryza granulata from South and Southeast Asia." Genetic Resources and Crop Evolution 53, no. 1 (2006): 197–204. http://dx.doi.org/10.1007/s10722-004-6691-y.

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10

Gao, Dongying, Zhiyun Gong, Rod A. Wing, Jiming Jiang, and Scott A. Jackson. "Molecular and Cytological Characterization of Centromeric Retrotransposons in a Wild Relative of Rice, Oryza granulata." Tropical Plant Biology 4, no. 3-4 (2011): 217–27. http://dx.doi.org/10.1007/s12042-011-9083-4.

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11

Suhartini, Tintin. "Spesies Padi Liar (Oryza sp.) sebagai Sumber Gen Ketahanan Cekaman Abiotik dan Biotik pada Padi Budidaya." Jurnal Penelitian dan Pengembangan Pertanian 35, no. 4 (2017): 197. http://dx.doi.org/10.21082/jp3.v35n4.2016.p197-207.

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<p>ABSTRACT<br />Wild rice species could be used for improvement of rice varieties because they have a good character for resistance to biotic and abiotic stresses. Some of Indonesian wild rice species are Oryza meyeriana, O. granulata, O. longiglumis, O. officinalis, O. ridleyi, O. rufipogon and O. schlechteri. IRRI has a collection of 2,500 accesions of wild rice and 18 species were collected in ICABIOGRAD, Bogor. Some species of wild rice are known to have resistance genes to biotic and abiotic stresses. A number of<br />accessions of O. officinalis contained resistance ge

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Lu, B. R. "Need to conserve wild rice species in Nepal." International Rice Research Notes 24, no. 1 (1999): 43. https://doi.org/10.5281/zenodo.7000779.

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This article 'Need to conserve wild rice species in Nepal' appeared in the International Rice Research Notes series, created by the International Rice Research Institute (IRRI) to expedite communication among scientists concerned with the development of improved technology for rice and rice-based systems. The series is a mechanism to help scientists keep each other informed of current rice research findings. The concise scientific notes are meant to encourage rice scientists to communicate with one another to obtain details on the research reported.

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13

Aggarwal, R. K., D. S. Brar, N. Huang, and G. S. Khush. "Molecular analysis of introgression in Oryza sativa/O. brachyantha and O. sativa/O.granulata derivatives." International Rice Research Notes 21, no. 2/3 (1996): 14–15. https://doi.org/10.5281/zenodo.6824990.

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This article 'Molecular analysis of introgression in Oryza sativa/O. brachyantha and O. sativa/O.granulata derivatives' appeared in the International Rice Research Notes series, created by the International Rice Research Institute (IRRI) to expedite communication among scientists concerned with the development of improved technology for rice and rice-based systems. The series is a mechanism to help scientists keep each other informed of current rice research findings. The concise scientific notes are meant to encourage rice scientists to communicate with one another to obtain details o

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14

Yi, Chuandeng, Mingsen Wang, Wei Jiang, et al. "Isolation and Identification of a Functional Centromere Element in the Wild Rice Species Oryza granulata with the GG Genome." Journal of Genetics and Genomics 42, no. 12 (2015): 699–702. http://dx.doi.org/10.1016/j.jgg.2015.09.009.

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15

Qian, W., S. Ge, and D. Y. Hong. "Genetic variation within and among populations of a wild rice Oryza granulata from China detected by RAPD and ISSR markers." Theoretical and Applied Genetics 102, no. 2-3 (2001): 440–49. http://dx.doi.org/10.1007/s001220051665.

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16

Zhou, Y., Y. P. Zhou, D. Y. Hong, B. R. Lu, X. Q. Gong, and S. Y. Chen. "ITS1 sequences of nuclear ribosome DNA in rice species from China and their phylogenetic implications." International Rice Research Notes 22, no. 2 (1997): 4. https://doi.org/10.5281/zenodo.6880686.

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This article 'ITS1 sequences of nuclear ribosome DNA in rice species from China and their phylogenetic implications' appeared in the International Rice Research Notes series, created by the International Rice Research Institute (IRRI) to expedite communication among scientists concerned with the development of improved technology for rice and rice-based systems. The series is a mechanism to help scientists keep each other informed of current rice research findings. The concise scientific notes are meant to encourage rice scientists to communicate with one another to obtain details on the resea

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17

Yuan, Zhi-lin, Zhen-zhu Su, Li-juan Mao, et al. "Distinctive endophytic fungal assemblage in stems of wild rice (Oryza granulata) in China with special reference to two species of Muscodor (xylariaceae)." Journal of Microbiology 49, no. 1 (2011): 15–23. http://dx.doi.org/10.1007/s12275-011-0213-3.

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18

Yuan, Zhi-Lin, Fu-Cheng Lin, Chu-Long Zhang, and Christian P. Kubicek. "A new species of Harpophora (Magnaporthaceae) recovered from healthy wild rice (Oryza granulata) roots, representing a novel member of a beneficial dark septate endophyte." FEMS Microbiology Letters 307, no. 1 (2010): 94–101. http://dx.doi.org/10.1111/j.1574-6968.2010.01963.x.

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19

Gao, Li‐zhi, Song Ge, and De‐yuan Hong. "Low Levels of Genetic Diversity within Populations and High Differentiation among Populations of a Wild Rice, Oryza granulata Nees et Arn. ex Watt., from China." International Journal of Plant Sciences 161, no. 4 (2000): 691–97. http://dx.doi.org/10.1086/314289.

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20

Wu, Cheng-Jun, Zai-Quan Cheng, Xing-Qi Huang, Shou-Hua Yin, Kai-Ming Cao, and Chong-Rong Sun. "Genetic diversity among and within populations of Oryza granulata from Yunnan of China revealed by RAPD and ISSR markers: implications for conservation of the endangered species." Plant Science 167, no. 1 (2004): 35–42. http://dx.doi.org/10.1016/j.plantsci.2004.02.022.

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21

XIONG, Zhiyong. "Comparative physical mapping of rice BAC clones linked to resistance genes Glh, Bph-3 and xa-5 in Oryza sativa L. and O. granulata Nees et Arn. ex Watt." Chinese Science Bulletin 49, no. 6 (2004): 591. http://dx.doi.org/10.1360/03wc0533.

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22

Ayuni, Helda Riska, Dimas Adrianto, and Krismayadi Krismayadi. "Pemanfaatan limbah sekam padi (Oryza sativa L.) sebagai pengisi pada tablet yang dibuat dengan granulasi kering." Indonesian Journal of Health Science 4, no. 5 (2024): 441–52. http://dx.doi.org/10.54957/ijhs.v4i5.968.

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Limbah Sekam padi mengandung mikrokristalin selulosa yang dapat digunakan sebagai bahan pengisi tablet menggunakan metode granulasi kering. Tablet merupakan sediaan yang banyak digunakan dalam sediaan farmasi dibandingkan sediaan lain karena pemberiannya dilakukan secara oral. Penelitian ini dilakukan secara eksperimental dan bertujuan untuk membandingkan variasi formula yang berbeda pada bahan pengisi sekam padi (Oryza sativa L.) dengan konsentrasi 15%, 20%, dan 25% dengan bahan pengisi yang biasa digunakan pada granulasi kering yaitu Pregelatine starch dengan konsentrasi 20%. Penelitian ini

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23

Yuan, Zhi-lin, Chu-long Zhang, Fu-cheng Lin, and Christian P. Kubicek. "Identity, Diversity, and Molecular Phylogeny of the Endophytic Mycobiota in the Roots of Rare Wild Rice (Oryza granulate) from a Nature Reserve in Yunnan, China." Applied and Environmental Microbiology 76, no. 5 (2009): 1642–52. http://dx.doi.org/10.1128/aem.01911-09.

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ABSTRACT Rice (Oryza sativa L.) is, on a global scale, one of the most important food crops. Although endophytic fungi and bacteria associated with rice have been investigated, little is known about the endophytic fungi of wild rice (Oryza granulate) in China. Here we studied the root endophytic mycobiota residing in roots of O. granulate by the use of an integrated approach consisting of microscopy, cultivation, ecological indices, and direct PCR. Microscopy confirmed the ubiquitousness of dark septate endophytes (DSEs) and sclerotium-like structures in root tissues. Isolations from 204 root

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24

I. S.K. CHAUDHARY, S.K. THAKUR, and R.B. THAKUR. "Effect of sources and methods of nitrogen application on growth, yield and N uptake of transplanted lowland rice (Oryza sativa) and their residual effect on succeeding wheat (~n'ticuk aestivum)." Indian Journal of Agronomy 51, no. 1 (2001): 44958. http://dx.doi.org/10.59797/ija.v51i1.4951.

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A fitd experiment was conducted during 1998-2000 on silty-clay soil at University research farm, Pusa (Bihar), to evaluate the relative efficiency of few slow-release N fertilizers, viz. prilled urea (PU), Mussoorie rock phosphate-coated urea (MRPU), nimin-coated urea (NCU) and large granulated urea (LGU) with basal and split application in transplanted lowland rice (Oryza sativa L.) and their effect on succeeding wheat (Triticum aestivum L. emend. Fiori & Paol.). Modified urea fertilizers exhibited their superiority by recording significantly higher value of all the yield-contributing cha

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S., R. Weerakoon. "Neglected wild rice (Oryza spp.) in Sri Lanka." INTERNATIONAL JOURNAL OF LIFE SCIENCE AND AGRICULTURE RESEARCH 01, no. 02 (2022): 20–31. https://doi.org/10.5281/zenodo.10441691.

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ABSTRACT In Sri Lanka, five wild rice species are reported; <em>Oryza nivara</em> [AA], <em>O. rufipogan</em> (AA) <em>O. eichengeri</em> [CC], <em>O. rhizomatis</em> (CC) and <em>O. granulate</em> (GG). Wild rice is the presumed progenitor/s of cultivated rice and is distributed in tropical wetland ecosystems of the world.  Wild rice specie often thrives and evolve in wetlands are now neglected. Out of the total of five wild rice species, three are commonly grown in wetlands.  The present review describes five wild rice species indiv

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Sreelekshmi, S., and VS Devi. "Yield enhancement and nutrient uptake through soil amelioration and foliar nutrition in rice (Oryza sativa L.) in Vaikom Kari soils." Oryza-An International Journal on Rice 61, no. 4 (2024): 318–25. https://doi.org/10.35709/ory.2024.61.4.6.

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A field experiment was carried out in Vaikom kari soils of Kuttanad, during puncha season from October 2020 to February 2021 with an objective to augment the yield and nutrient uptake of rice in Vaikom kari soils through soil amelioration practices for managing soil acidity, and by supplementing nutrition at panicle initiation stage through foliar application of potassium and micronutrients. The experiment was laid out in Factorial Randomized Block Design with two factors in which factor A consisted of three levels of dolomite application in soil : No dolomite application (D0), Ordinary dolomi

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Riyadi, Ahmad. "Pengaruh Pemberian Pupuk Organik Granul terhadap Pertumbuhan dan Hasil Tanaman Padi (Oryza sativa L.) Varietas Ciherang pada Lahan Rawa Lebak." RAWA SAINS : JURNAL SAINS STIPER AMUNTAI 2, no. 1 (2012): 48–52. http://dx.doi.org/10.36589/rs.v2i1.9.

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Rice is a food that produces rice. This food is a staple food for most Indonesians. Even as a staple food, rice can be replaced or substituted by other food ingredients, but rice has its own value for people who are accustomed to eating rice and cannot be easily replaced by other food ingredients. This study aims (i) to know the effect, and (ii) to get the best dose of granule organic fertilizer on the growth and yield of rice plants of Ciherang Varieties on lebak lowland. This research was conducted in Harusan Village, Amuntai Tengah District, North Hulu Regency, from February to May 2011. Th

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Khairiah, Ardian, Sulyanah Sulyanah, and Dasumiati Dasumiati. "Respon Pertumbuhan dan Produksi Padi (Oryza sativa L.) Pada Kombinasi Pupuk Organik Granular dan Anorganik." Al-Kauniyah: Jurnal Biologi 17, no. 1 (2023): 220–29. http://dx.doi.org/10.15408/kauniyah.v17i1.35754.

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AbstrakPenggunaan pupuk anorganik dalam budi daya tanaman yang berlebihan dapat mengakibat kerusakan lingkungan. Pemberian Pupuk Organik Granul (POG) diharapkan dapat mengurangi penggunaan pupuk anorganik sekaligus meningkatkan produksi padi Galur Mukti Padi (GMP) 04. Penelitian bertujuan untuk mengetahui pengaruh kombinasi penggunaan POG dan pupuk anorganik terhadap pertumbuhan dan produksi padi GMP 04, dan memperoleh dosis POG yang dapat mengurangi penggunaan pupuk anorganik. Penelitian menggunakan Rancangan Acak Kelompok (RAK) split plot dua faktor. Faktor pertama dosis POG (0, 70, dan 140

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Wang, Z. Y., J. X. He, Z. G. Xu, Z. Xu, and L. Ma. "Cutaneous granuloma caused by Rhizopus oryzae with a novel mutation in the CYBB gene in a monozygotic male twin." Journal of the European Academy of Dermatology and Venereology 32, no. 5 (2018): e184-e185. http://dx.doi.org/10.1111/jdv.14711.

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Musa, Mustapha Hauwa, Jude Kelechi Agomuo, Munir Abba Dandago, Kazeem Sogunle Atanda, Danbaba Nahemiah, and Amon Terpase. "Functional and micro-structural properties of starch and flour produced from one indigenous and three improved local rice (<i>Oryza sativa</i>) varieties." Dutse Journal of Pure and Applied Sciences 10, no. 2a (2024): 38–49. http://dx.doi.org/10.4314/dujopas.v10i2a.4.

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Study on the functional and micro-structural quality of starch and flour obtained from four (4) varieties of rice was assessed. The quality aspect of the rice varieties was compared between local and improved variety (Faro 44, 52, 61 and Kwandala). The samples were processed to obtain flours and starches. The Proximate composition, micro-structure and functional attributes of the samples were analyzed. The percentage moisture contents in rice flours ranged from (8.39-8.68 %) while those of starches ranged from (8.68-9.98%). The percentage ash content of the flour samples analyzed ranged from (

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31

Li, Rongxin, Bo Wang, Suqin Xiao, et al. "Characterization of the complete chloroplast genome and comparative analysis of the phylogeny and codon usage bias of three Yunnan wild rice species." Frontiers in Plant Science 16 (July 2, 2025). https://doi.org/10.3389/fpls.2025.1555104.

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BackgroundWild rice species with a rich genetic diversity, wide adaptability, and high photosynthetic rates provide a valuable genetic reservoir for rice breeding.MethodsIn this study, the chloroplast (cp) genomes of three Yunnan wild rice species, namely Oryza rufipogon, Oryza officinalis, and Oryza granulata, were sequenced using second-generation sequencing technology, followed by assembly and annotation. Phylogeny and codon usage bias were analyzed using MEGA and RStudio.ResultsThe total lengths of the cp genomes of the three species ranged from 134,556 to 135,937 bp, with a GC content of

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U. R. Yamasinghe and D. Gunawardana. "Solation and Characterization of Putative Nitrogen-Fixing Endophytes from Three Distinct Wild Rice Species in Sri Lanka." Vidyodaya Journal of Science 25, no. 02 (2022). http://dx.doi.org/10.31357/vjs.v25i02.6173.

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There are 22 recorded wild rice species on earth, of which 5 are found in Sri Lanka. Knowledgeon the endophytic diazotrophs of wild rice species, which can be adopted for paddy cultivation, is still ata fledgling stage of discovery. The identification of stably maintained endophytic diazotrophic bacteria inthe genus Oryza requires further attention, especially due to skyrocketing global prices of chemicalfertilizers. The main objective of our study was the isolation and characterization of endophytic and rootsurfacecolonizing nitrogen fixers from three distinct wild rice species found in Sri L

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Zhu, Jia-Nan, Yi-Jun Yu, Meng-Di Dai, et al. "A New Species in Pseudophialophora From Wild Rice and Beneficial Potential." Frontiers in Microbiology 13 (March 11, 2022). http://dx.doi.org/10.3389/fmicb.2022.845104.

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Wild rice (Oryza granulata) is a natural resource pool containing abundant unknown endophytic fungi species. There are few reports on the endophytic fungi in wild rice. Here, one isolate recovered from wild rice roots was identified as a new species Pseudophialophora oryzae sp. nov based on the molecular phylogeny and morphological characteristics. Fluorescent protein-expressing P. oryzae was used to monitor the fungal colonization pattern. Hyphae invaded the epidermis to the inner cortex but not into the root stele. The inoculation of P. oryzae promoted the rice growth, with the growth parame

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Shi, Cong, Wei Li, Qun-Jie Zhang, et al. "The draft genome sequence of an upland wild rice species, Oryza granulata." Scientific Data 7, no. 1 (2020). http://dx.doi.org/10.1038/s41597-020-0470-2.

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Tripathy, Kabita, Gauri Misra, Balwant Singh, and Nagendra K. Singh. "Identification, distribution and comparative analysis of microsatellites in the chloroplast genome of Oryza species." Indian Journal of Genetics and Plant Breeding (The) 79, no. 3 (2019). http://dx.doi.org/10.31742/ijgpb.79.3.2.

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Chloroplast genome is important because of its maternally inherited, conserved within species and stable in structure. This allows elucidation of inter-specific comparison, identification and establishment of evolutionary relationship among different species. Different classes of DNA elements were present in chloroplast genome of Oryza species, among them chloroplast microsatellites were supposed to be highly variable. In this study, a total of 102 sequences of chloroplast genome of 23 species of Oryza genus belonging to ten different genome types were downloaded from NCBI nucleotide database.

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Wu, Zhigang, Dongming Fang, Rui Yang, et al. "De novo genome assembly of Oryza granulata reveals rapid genome expansion and adaptive evolution." Communications Biology 1, no. 1 (2018). http://dx.doi.org/10.1038/s42003-018-0089-4.

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37

Kajiya-Kanegae, Hiromi, Hajime Ohyanagi, Toshinobu Ebata, et al. "OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species." Rice 14, no. 1 (2021). http://dx.doi.org/10.1186/s12284-021-00468-x.

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Abstract Background OryzaGenome (http://viewer.shigen.info/oryzagenome21detail/index.xhtml), a feature within Oryzabase (https://shigen.nig.ac.jp/rice/oryzabase/), is a genomic database for wild Oryza species that provides comparative and evolutionary genomics approaches for the rice research community. Results Here we release OryzaGenome2.1, the first major update of OryzaGenome. The main feature in this version is the inclusion of newly sequenced genotypes and their meta-information, giving a total of 217 accessions of 19 wild Oryza species (O. rufipogon, O. barthii, O. longistaminata, O. me

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Zhang, Wen, Yuzhe Sun, Jia Liu, et al. "DNA barcoding of Oryza: conventional, specific, and super barcodes." Plant Molecular Biology, September 3, 2020. http://dx.doi.org/10.1007/s11103-020-01054-3.

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Abstract Key message We applied the phylogenomics to clarify the concept of rice species, aid in the identification and use of rice germplasms, and support rice biodiversity. Abstract Rice (genus Oryza) is one of the most important crops in the world, supporting half of the world’s population. Breeding of high-yielding and quality cultivars relies on genetic resources from both cultivated and wild species, which are collected and maintained in seed banks. Unfortunately, numerous seeds are mislabeled due to taxonomic issues or misidentifications. Here, we applied the phylogenomics of 58 complet

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Tong, Shuai, Johan Emil Kjær, Lucas León Peralta Ogorek, et al. "Responses of key root traits in the genus Oryza to soil flooding mimicked by stagnant, deoxygenated nutrient solution." Journal of Experimental Botany, January 11, 2023. http://dx.doi.org/10.1093/jxb/erad014.

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Abstract Excess water can induce flooding stress resulting in yield loss of crops, even in wetland plants such as rice. However, traits from species of wild Oryza have already been used to improve tolerance to abiotic stress in cultivated rice. This study aimed to establish root responses to sudden soil flooding among 8 wild relatives of rice with different habitat preferences benchmarked against 3 genotypes of O. sativa. Plants were raised in hydroponics, mimicking drained or flooded soils, to assess the plasticity of adventitious roots. Traits included were apparent permeance (PA) to O2 of t

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Orozco-Arias, Simon, Mariana S. Candamil-Cortes, Paula A. Jaimes, et al. "Automatic curation of LTR retrotransposon libraries from plant genomes through machine learning." Journal of Integrative Bioinformatics, July 12, 2022. http://dx.doi.org/10.1515/jib-2021-0036.

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Abstract Transposable elements are mobile sequences that can move and insert themselves into chromosomes, activating under internal or external stimuli, giving the organism the ability to adapt to the environment. Annotating transposable elements in genomic data is currently considered a crucial task to understand key aspects of organisms such as phenotype variability, species evolution, and genome size, among others. Because of the way they replicate, LTR retrotransposons are the most common transposable elements in plants, accounting in some cases for up to 80% of all DNA information. To ann

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Dissanayake, R., S. Guruge, M. Udugama, et al. "Economic valuation of conservation of genetic resources of wild rice relatives : Assessing the preferences of adjacent community for conserving Oryza granulata in the Wavulpane area." Proceedings of International Forestry and Environment Symposium 14 (March 23, 2012). http://dx.doi.org/10.31357/fesympo.v14i0.385.

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Chen, Hao, Shanshan Dong, Zhizhou He, et al. "Effects of land use change on population survival of three wild rice species in China since 2001." Frontiers in Plant Science 13 (September 6, 2022). http://dx.doi.org/10.3389/fpls.2022.951903.

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Abstract:

Land use change stemming from human activities, particularly cropland expansion, heavily threatens the survival of crop wild relatives that usually occur nearby or scatter in farming systems. Understanding the impacts of land use change on wild populations is critical in forming the conservation decision-making of wild relatives. Based on the investigations on the population survival of three wild rice species (Oryza rufipogon, O. officinalis, and O. granulata) in China over the past 40 years (1978–2019), the effect of land use change during the past 20 years (2001–2019) on the natural populat

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