Relevant bibliographies by topics / Oryza sativa japonica

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  1. Journal articles
  2. Dissertations / Theses
  3. Book chapters
  4. Conference papers
  5. Reports

Academic literature on the topic 'Oryza sativa japonica'

Author: Grafiati
Published: 18 April 2022
Last updated: 30 July 2025

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Journal articles on the topic "Oryza sativa japonica"

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Kim, Bongsong. "Classifying Oryza sativa accessions into Indica and Japonica using logistic regression model with phenotypic data." PeerJ 7 (November 7, 2019): e7259. http://dx.doi.org/10.7717/peerj.7259.

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In Oryza sativa, indica and japonica are pivotal subpopulations, and other subpopulations such as aus and aromatic are considered to be derived from indica or japonica. In this regard, Oryza sativa accessions are frequently viewed from the indica/japonica perspective. This study introduces a computational method for indica/japonica classification by applying phenotypic variables to the logistic regression model (LRM). The population used in this study included 413 Oryza sativa accessions, of which 280 accessions were indica or japonica. Out of 24 phenotypic variables, a set of seven phenotypic
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Long, Weixiong, Yonghui Li, Zhengqing Yuan, et al. "Development of InDel markers for Oryza sativa ssp. javanica based on whole-genome resequencing." PLOS ONE 17, no. 10 (2022): e0274418. http://dx.doi.org/10.1371/journal.pone.0274418.

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Oryza sativa ssp. javanica rice varieties exhibit a wide variation in the phenotypes of several important agronomic traits, including grain quality, grain shape, plant architecture, disease resistance, and high adaption to an unfavorable environment, indicating a great potential for rice improvement. DNA molecular markers are basic and critical tools in genetic analysis and gene mining. However, only a few whole-genome variation analyses have been performed in Oryza sativa ssp. Javanica (tropical japonica rice), and this has hampered the utilization of such an important resource. In this study
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Uhrinová, A., and N. Poľančíková. "Antioxidant Activity of the Fungus Cordyceps sinensis Grown on Two Different Media." Folia Veterinaria 62, no. 3 (2018): 68–73. http://dx.doi.org/10.2478/fv-2018-0030.

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Abstract Cordyceps sinensis, a species of the genus Ascomycetes, is recognised as the most famous tonic herb and natural remedy in traditional Chinese medicine for centuries. Various pharmacological actions of the chemical constituents of C. sinensis have been reported, including: antitumour effects, hepatoprotective and anti-inflammatory effects, and antioxidant, nephroprotective and anti-apoptotic properties. In this study we tested the antioxidant activity of extracts of the fungus C. sinensis grown on two subspecies of rice, Oryza sativa var. Indica and Oryza sativa var. Japonica. The extr
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Zhou, Mingao, Yifei Jiang, Xuhui Liu, et al. "Genome-Wide Identification and Evolution Analysis of the CYP76 Subfamily in Rice (Oryza sativa)." International Journal of Molecular Sciences 24, no. 10 (2023): 8522. http://dx.doi.org/10.3390/ijms24108522.

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The CYP76 subfamily, a member of the CYP superfamily, plays crucial roles in the biosynthesis of phytohormones in plants, involving biosynthesis of secondary metabolites, hormone signaling, and response to environmental stresses. Here, we conducted a genome-wide analysis of the CYP76 subfamily in seven AA genome species: Oryza sativa ssp. japonica, Oryza sativa ssp. indica, Oryza rufipogon, Oryza glaberrima, Oryza meridionalis, Oryza barthii, and Oryza glumaepatula. These were identified and classified into three groups, and it was found that Group 1 contained the largest number of members. An
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Nascimento, Silva dos Passos Kévila Kelma, and de Morais Jéssica Santana. "POR QUE A CASCA DA BANANA ESCURECE? UMA ANÁLISE GENÉTICA E FILOGENÉTICA DO GENE EIL1 NA REGULAÇÃO DO AMADURECIMENTO DA BANANA MUSA ACUMINATA SUBSP. MALACCENSIS." I ENCONTRO REGIONAL DE CIÊNCIAS AGRÁRIAS 01 (September 20, 2024): 11. https://doi.org/10.5281/zenodo.13800561.

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Este estudo foca na análise filogenética e genética do gene EIL1 (ETHYLENE INSENSITIVE3-like 1 protein) em Musa acuminata e em outras espécies de plantas, utilizando dados do bancode dados NCBI e ferramentas de bioinformática. O objetivo principal é compreender o grau deparentesco e os processos evolutivos relacionados ao gene EIL1 e ao gene 18S. O alinhamentodas sequências revelou que Musa acuminata compartilha sinapomorfias com Arabidopsisthaliana e Solanum lycopersicum, enquanto Oryza sativa subsp. japonica está mais distante,indicando
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Lee, Yoo-Jin, Michael J. Thomson, and Joong Hyoun Chin. "Application of indica–japonica single-nucleotide polymorphism markers for diversity analysis of Oryza AA genome species." Plant Genetic Resources 12, S1 (2014): S36—S40. http://dx.doi.org/10.1017/s1479262114000215.

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High-throughput genotyping using single-nucleotide polymorphisms (SNP) is one tool that can be used to study the genetic relationships between wild rice relatives and cultivated rice. In this study, a set of 96 indica–japonica SNP markers, which can differentiate indica and japonica subspecies of rice, were used to characterize 227 Oryza accessions including 93 AA genome accessions from seven wild Oryza species. A total of 72 markers of the 96 markers were selected for the phylogenetic study and allele polymorphism survey. A subset of SNP markers were present only in Oryza sativa and evolution
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GAO, LI-ZHI, CHI-HONG ZHANG, LI-PING CHANG, JI-ZENG JIA, ZONG-EN QIU, and YU-SHEN DONG. "Microsatellite diversity within Oryza sativa with emphasis on indica–japonica divergence." Genetical Research 85, no. 1 (2005): 1–14. http://dx.doi.org/10.1017/s0016672304007293.

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The molecular evolution of cultivated rice Oryza sativa L. has long been a subject of rice evolutionists. To investigate genetic diversity within and differentiation between the indica and japonica subspecies, 22 accessions of indica and 35 of japonica rice were examined by five microsatellite loci from each chromosome totalling 60 loci. Mean gene diversity value in the indica rice (H=0·678) was 1·18 times larger than in the japonica rice (H=0·574). Taking the sampling effect into consideration, average allele number in the indica rice was 1·40 times higher than that in the japonica rice (14·6
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Grover, Anil, and Deepak Pental. "Interrelationships of Oryza species based on electrophoretic patterns of alcohol dehydrogenase." Canadian Journal of Botany 70, no. 2 (1992): 352–58. http://dx.doi.org/10.1139/b92-047.

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Nineteen different species belonging to the genus Oryza were studied for variation in electrophoretic patterns of alcohol dehydrogenase (ADH) extracted from germinating seeds. The ADH patterns were similar for aerobically and anaerobically germinating seeds of all the species. Oryza saliva accessions, both indica and japonica, revealed a five-band pattern on polyacrylamide gels. African cultivated rice, Oryza glaberrima, had an alcohol dehydrogenase pattern similar to that of O. sativa. Oryza perennis complex comprising of Oryza nivara, Oryza rufipogon in Asia, Oryza barthii, Oryza longistamin
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Lu, Yingqing. "Gene Genealogy-Based Mutation Analysis Reveals Emergence of Aus, Tropical japonica, and Aromatic of Oryza sativa during the Later Stage of Rice Domestication." Genes 14, no. 7 (2023): 1412. http://dx.doi.org/10.3390/genes14071412.

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Asian rice (Oryza sativa L.) has become a model for understanding gene functions and domestication in recent decades; however, its own diversification is still controversial. Although the division of indica and japonica and five subgroups (aus, indica (sensu stricto), japonica (sensu stricto), tropical japonica, and aromatic) are broadly accepted, how they are phylogenetically related is not transparent. To clarify their relationships, a sample of 121 diverse genes was chosen here from 12 Oryza genomes (two parental and ten O. sativa (Os)) in parallel to allow gene genealogy-based mutation (GG
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Li, Li, Che Wang, Qian Liang, Dian Rong Ma, and Wen Fu Chen. "Microtubules Dynamics Regulates Mesocotyl Elongation in Rice." Applied Mechanics and Materials 513-517 (February 2014): 4277–80. http://dx.doi.org/10.4028/www.scientific.net/amm.513-517.4277.

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Mesocotyl elongation in rice is essential for seedling emergence. Our previous screening identified weedy rice accessions (Oryza sativa f. spontanea L.) (WR04-6) with unusual long mesocotyl. In this study, using rice cultivar Akihikari (Oryza sativa, subspecies japonica) as control, we observed that weedy rice accessions display more extensive microtubules (MTs) depolymerization in the early stage of mesocotyl elongation. At the end of mesocotyl elongation, the predominant MTs in weedy rice are transversely oriented, while, Akihikari has oblique MTs arrays.
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Dissertations / Theses on the topic "Oryza sativa japonica"

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Lima, Júlio César de. "Ferritina : silenciamento gênico, caracterização molecular de mutantes e expressão em plantas de arroz (Oryza sativa L. ssp. japonica cv Nipponbare)." reponame:Biblioteca Digital de Teses e Dissertações da UFRGS, 2007. http://hdl.handle.net/10183/15470.

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O ferro é um micronutiente essencial em plantas, como também para praticamente todos os demais organismos. Porém, as formas livres de ferro intracelular podem ser extremamente danosas. A proteína ferritina tem papel crucial neste contexto, com a função de acumular ferro de uma forma segura e biodisponível. Cada proteína pode acumular aproximadamente 4500 átomos de ferro em sua cavidade interna. Em plantas, existe um número variado de cópias gênicas para ferritina e estas cópias têm expressão modulada por fatores bióticos e abióticos. No genoma do arroz foram caracterizadas duas cópias para o g
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Finatto, Taciane. "Análise transcriptômica de genes e LTR retrotransposons em arroz (Oryza sativa ssp. japonica) em resposta à toxidez por ferro." Universidade Federal de Pelotas, 2012. http://repositorio.ufpel.edu.br/handle/ri/2064.

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Made available in DSpace on 2014-08-20T14:06:12Z (GMT). No. of bitstreams: 1 tese_taciane_finatto.pdf: 5834731 bytes, checksum: e10f781234d54582cc17a9b8dff16c53 (MD5) Previous issue date: 2012-02-27<br>Iron toxicity in plants is associated with the presence of large concentrations of reduced iron (Fe2+) in the soil solution, which occurs in flooded soils and affects rice plants grown under this condition. Symptoms of iron toxicity involve oxidative stress in leaves, as a response to excessive Fe2+ absorption by the roots. The responses of plants to stress conditions include stimulus percep
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Maia, Luciano Carlos da. "Desenvolvimento de ferramenta e análise in silico da ocorrência de microssatélites no genoma do arroz." Universidade Federal de Pelotas, 2007. http://repositorio.ufpel.edu.br/handle/ri/2082.

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Made available in DSpace on 2014-08-20T14:06:15Z (GMT). No. of bitstreams: 1 Dissertacao_Luciano_Carlos_da_Maia.pdf: 2299013 bytes, checksum: 1ea0e6e151a64a565fee2caf64a2b9d7 (MD5) Previous issue date: 2007-04-05<br>The classic plant breeding methods are responsible for the major advances of modern agriculture. However, molecular biology and genomic techniques have provided insights into how further advance in genetic gains. Molecular markers have been successfully applied in genetic mapping and marker assisted selection in many plant species. Rice after the complete sequence of its ge
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Rizzi, Vanessa. "Diversidade, estruturação genética e mapeamento associativo em germoplasma japonês de arroz utilizando marcadores DArT-seq." Universidade de São Paulo, 2017. http://www.teses.usp.br/teses/disponiveis/11/11137/tde-20032018-111547/.

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O conhecimento da diversidade genética e da estrutura populacional das variedades mantidas em bancos de germoplasma é de fundamental importância para sua efetiva utilização em programas de melhoramento. O mapeamento por associação, também conhecido como mapeamento por desequilíbrio de ligação, é um dos principais métodos para relacionar genes e alelos às características de interesse, através da co-segregação de marcadores genéticos polimórficos com os genes envolvidos na variação das características em estudo. O Banco de Germoplasma de Arroz do Departamento de Genética da ESALQ contém 192 aces
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Orasen, G. "GENOME-WIDE ANALYSIS OF JAPONICA RICE PERFORMANCES UNDER ALTERNATE WETTING AND DRYING AND PERMANENT FLOODING CONDITIONS." Doctoral thesis, Università degli Studi di Milano, 2018. http://hdl.handle.net/2434/544806.

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A rice GWAS panel of 281 accessions of japonica rice was phenotypically characterized for traits related to phenology, plant and seed morphology, physiology, yield and grain ionome for two years in field conditions under permanent flooding (PF) or AWD. A genome-wide analysis approach uncovered a total of 360 significant marker-trait associations (MTAs), of which 105 were AWD-specific, 178 were PF-specific and 77 were in common between the two water management systems. AWD-specific associations were identified for several agronomic traits including days to maturation, days from flowering to mat
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Lu, Chuangen. "Survey and Application of Segregation-Distortion-Neutral Alleles to Improve Pollen Fertility in indica-japonica Hybrid Rice Breeding (Oryza sativa L.)." Kyoto University, 2000. http://hdl.handle.net/2433/181072.

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Silva, Pedro Italo Tanno. "Descoberta e validação de marcadores SNPs por sequenciamento de alta performance do genoma estrutural e por genotipagem por sequenciamento (GBS) de arroz de sequeiro (Oryza sativa spp. japonica)." reponame:Repositório Institucional da UnB, 2012. http://repositorio.unb.br/handle/10482/14647.

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Dissertação (mestrado)—Universidade de Brasília, Instituto de Ciências Biológicas, Departamento de Biologia Celular, 2012.<br>Submitted by Alaíde Gonçalves dos Santos (alaide@unb.br) on 2013-11-12T10:51:17Z No. of bitstreams: 1 2012_PedroItaloTannoSilva.pdf: 4395558 bytes, checksum: 0349f90349bbe21252b45be2ddf9d52a (MD5)<br>Approved for entry into archive by Guimaraes Jacqueline(jacqueline.guimaraes@bce.unb.br) on 2013-11-20T12:34:15Z (GMT) No. of bitstreams: 1 2012_PedroItaloTannoSilva.pdf: 4395558 bytes, checksum: 0349f90349bbe21252b45be2ddf9d52a (MD5)<br>Made available in DSpace on 2013-11
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Silva, Daniany Rodrigues Adorno. "Análise de qtl para produtividade no cruzamento de arroz epagri 108 (indica) x irat 122 (japonica) por marcadores SNPs." Universidade Federal de Goiás, 2016. http://repositorio.bc.ufg.br/tede/handle/tede/6173.

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Submitted by Marlene Santos (marlene.bc.ufg@gmail.com) on 2016-09-09T20:17:53Z No. of bitstreams: 2 Dissertação - Daniany Rodrigues Adorno Silva - 2016.pdf: 3317454 bytes, checksum: 2a1e85ca0c09e0b89edfaf2b184ee8e7 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)<br>Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2016-09-12T14:20:21Z (GMT) No. of bitstreams: 2 Dissertação - Daniany Rodrigues Adorno Silva - 2016.pdf: 3317454 bytes, checksum: 2a1e85ca0c09e0b89edfaf2b184ee8e7 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8
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Maia, Luciano Carlos da. "Caracterização in silico de microssatélites no genoma do arroz e análise comparativa com outras espécies vegetais." Universidade Federal de Pelotas, 2009. http://repositorio.ufpel.edu.br/handle/ri/1180.

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Made available in DSpace on 2014-08-20T13:25:42Z (GMT). No. of bitstreams: 1 Tese_Luciano_Carlos_da_Maia.pdf: 871025 bytes, checksum: fcb02e5ff38b9223264b40df7fe04318 (MD5) Previous issue date: 2009-07-03<br>Molecular markers have been successfuly applied in genetic mapping and marker assisted selection as an auxiliary tool for plant breeding and transfer of genetic information among related species. In this sense, the understanding of genome elements occurring in important crop species such as wheat, rice and maize can be used towards the improvement of basic knowledge in orphan grass
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Rebolledo, Maria Camila. "Diversité génétique de la vigueur initiale et de la tolérance au stress hydrique chez le riz (Orysa Sativa.L) : identification de caractères morphogénétiques, métaboliques et hydrique pour les études génétiques." Thesis, Montpellier, SupAgro, 2012. http://www.theses.fr/2012NSAM0003/document.

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La vigueur initiale (accumulation de biomasse aérienne) est déterminante pour un rapide établissement de la culture et l'accès aux ressources, contribuant ainsi à un évitement du stress hydrique. Cette thèse vise à caractériser la diversité phénotypique chez le riz (Oriza Sativa.L) des traits constituant la vigueur initiale et sa plasticité sous stress hydrique. L'étude à démontrée que la vigueur initiale dépend de caractères relatifs aux forces de puits et à la demande en assimilats carbonés, tels que le taux de développement (DR), le tallage et la taille potentielle des feuilles. Une relatio
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Book chapters on the topic "Oryza sativa japonica"

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Main, Marcy, Bronwyn Frame, and Kan Wang. "Rice, Japonica (Oryza sativa L.)." In Methods in Molecular Biology. Springer New York, 2014. http://dx.doi.org/10.1007/978-1-4939-1695-5_13.

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Buchholz, Wallace G., Weimin Teng, Delphia Wallace, John R. Ambler, and Timothy C. Hall. "Production of Transgenic Rice (Oryza sativa subspecies japonica cv. Taipei 309)." In Plant Virology Protocols. Humana Press, 1998. http://dx.doi.org/10.1385/0-89603-385-6:383.

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Ji, Ben-Hua, and De-Mao Jiao. "Photochemical Efficiency of PS II and Characteristics of Photosynthetic CO2 Exchange in Japonica and Indica Subspecies of Rice (Oryza sativa L.) and their Reciprocal Cross F1 Hybrids under Photoinhibitory Conditions." In Photosynthesis: Mechanisms and Effects. Springer Netherlands, 1998. http://dx.doi.org/10.1007/978-94-011-3953-3_521.

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Manikandakumar, K., S. Kumaran, and R. Srikumar. "Matrix Frequency Analysis of Oryza Sativa (Japonica Cultivar-Group) Complete Genomes." In Models and Applications of Chaos Theory in Modern Sciences. Science Publishers, 2011. http://dx.doi.org/10.1201/b11408-12.

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Conference papers on the topic "Oryza sativa japonica"

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Uhrinova, Anna, Lucia Ungvarska Malucka, and Martin Pavlik. "MEDICINAL FUNGI OF THE GENERA OPHIOCORDYCEPS SINENSIS AND PAECILOMYCES HEPIALI." In 22nd SGEM International Multidisciplinary Scientific GeoConference 2022. STEF92 Technology, 2022. http://dx.doi.org/10.5593/sgem2022/6.1/s25.12.

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Various secondary metabolites isolated from Ophiocordyceps sinensis, the Chinese caterpillar fungus, have been reported to possess high therapeutic potential. Paecilomyces hepiali has even more biologically important chemical components with interesting pharmacological activity. Traditional Chinese medicine uses Ophiocordyceps sinensis to treat lung and respiratory system problems, hyposexuality, hypolipidemia kidney, or liver, heart, and immune system conditions. In addition, it has been used to treat various forms of cancer, especially in addition to chemotherapy and radiotherapy. The object
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Thissa Marasingha, Marasingha Mudiyanselage Madhushani, Egodage Rasanjali Jayareka Samarakoon, Banneka Mudiyanselage Kumuduni Senarathne, and Haththotuwa Gamage Amal Sudaraka Samarasinghe. "Comparative Assessment of Grain Quality Characteristics and Cooking Parameters of White Rice (Oryza sativa Indica and Oryza sativa Japonica) Varieties Cultivated in Sri Lanka." In International Electronic Conference on Processes. MDPI, 2024. http://dx.doi.org/10.3390/engproc2024067058.

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SHASHIKANTH, M., A. SNEHALATHARANI, SK MUBARAK, and K. ULAGANATHAN. "GENOME-WIDE COMPUTATIONAL ANALYSIS OF SMALL NUCLEAR RNA GENES OF ORYZA SATIVA (INDICA AND JAPONICA)." In 4th Asia-Pacific Bioinformatics Conference. PUBLISHED BY IMPERIAL COLLEGE PRESS AND DISTRIBUTED BY WORLD SCIENTIFIC PUBLISHING CO., 2005. http://dx.doi.org/10.1142/9781860947292_0031.

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Rathnayake, Saubhagya, Nisha Kottearachchi, and S. P. C. Lankika. "In Silico Identification of Abiotic Stress-Responsive Candidate Genes in Rice and Their Allelic Differences Between At 354 and Bg 352." In SLIIT International Conference on Advancements in Sciences and Humanities 2023. Faculty of Humanities and Sciences, SLIIT, 2023. http://dx.doi.org/10.54389/gufj7597.

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Rice (Oryza sativa L) feeds more than half of the world’s population. One of the main elements that harm yield globally is abiotic stress. Therefore, it is important to develop abiotic stress tolerant rice varieties in order to increase rice productivity and to extend the cultivation. The lack of knowledge of the genetic mechanisms underlying abiotic stress tolerance is the primary issue with the traditional breeding technique. Hence, studying genes responsible for abiotic stress mechanisms is important to accelerate breeding by molecular marker - based detection techniques. Aiming at finding
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Reports on the topic "Oryza sativa japonica"

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Shah, Rakesh. Identification and characterization of orphan genes in rice (Oryza sativa japonica) to understand novel traits driving evolutionary adaptation and crop improvement. Iowa State University, 2018. http://dx.doi.org/10.31274/cc-20240624-858.

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