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Journal articles on the topic 'Paracoccus'

Author: Grafiati

Published: 4 June 2021

Last updated: 26 July 2025

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1

Bartosik, Dariusz, Michal Szymanik, and Jadwiga Baj. "Identification and Distribution of Insertion Sequences of Paracoccus solventivorans." Applied and Environmental Microbiology 69, no. 12 (2003): 7002–8. http://dx.doi.org/10.1128/aem.69.12.7002-7008.2003.

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ABSTRACT Three novel insertion sequences (ISs) (ISPso1, ISPso2, and ISPso3) of the soil bacterium Paracoccus solventivorans DSM 11592 were identified by transposition into entrapment vector pMEC1. ISPso1 (1,400 bp) carries one large open reading frame (ORF) encoding a putative basic protein (with a DDE motif conserved among transposases [Tnps] of elements belonging to the IS256 family) with the highest levels of similarity with the hypothetical Tnps of Rhodospirillum rubrum and Sphingopyxis macrogoltabida. ISPso2 (832 bp) appeared to be closely related to ISPpa2 of Paracoccus pantotrophus DSM

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2

La, Hyun-Jun, Wan-Taek Im, Leonid N. Ten, Myung Suk Kang, Do-Yun Shin, and Sung-Taik Lee. "Paracoccus koreensis sp. nov., isolated from anaerobic granules in an upflow anaerobic sludge blanket (UASB) reactor." International Journal of Systematic and Evolutionary Microbiology 55, no. 4 (2005): 1657–60. http://dx.doi.org/10.1099/ijs.0.63494-0.

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A Gram-negative, short rod- to coccus-shaped, non-spore-forming bacterium (Ch05T) was isolated from granules in an upflow anaerobic sludge blanket (UASB) reactor. On the basis of 16S rRNA gene sequence similarity, strain Ch05T was shown to belong to the subclass α-Proteobacteria, being related to Paracoccus solventivorans (97·5 %), Paracoccus alkenifer (96·9 %) and Paracoccus kocurii (96·4 %). The phylogenetic distance from Paracoccus species with validly published names was always less than 96 %. Physiological and chemotaxonomic data (major ubiquinone, Q-10; major fatty acids, C18 : 1 and C18

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3

Bartosik, Dariusz, Marta Sochacka, and Jadwiga Baj. "Identification and Characterization of Transposable Elements of Paracoccus pantotrophus." Journal of Bacteriology 185, no. 13 (2003): 3753–63. http://dx.doi.org/10.1128/jb.185.13.3753-3763.2003.

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ABSTRACT We studied diversity and distribution of transposable elements residing in different strains (DSM 11072, DSM 11073, DSM 65, and LMD 82.5) of a soil bacterium Paracoccus pantotrophus (α-Proteobacteria). With application of a shuttle entrapment vector pMEC1, several novel insertion sequences (ISs) and transposons (Tns) have been identified. They were sequenced and subjected to detailed comparative analysis, which allowed their characterization (i.e., identification of transposase genes, terminal inverted repeats, as well as target sequences) and classification into the appropriate IS or

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4

Kämpfer, P., Wei-An Lai, A. B. Arun, et al. "Paracoccus rhizosphaerae sp. nov., isolated from the rhizosphere of the plant Crossostephium chinense (L.) Makino (Seremban)." International Journal of Systematic and Evolutionary Microbiology 62, Pt_11 (2012): 2750–56. http://dx.doi.org/10.1099/ijs.0.039057-0.

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A Gram-negative, coccoid-shaped bacterium, strain CC-CCM15-8T, was isolated from a rhizosphere soil sample of the plant Crossostephium chinense (L.) Makino (Seremban) from Budai Township, Chiayi County, Taiwan. 16S rRNA gene sequence analysis clearly allocated strain CC-CCM15-8T to the Paracoccus cluster, showing highest similarities to the type strains of ‘Paracoccus beibuensis’ (98.8 %), Paracoccus homiensis (97.6 %), Paracoccus aestuarii (97.7 %) and Paracoccus zeaxanthinifaciens (97.7 %). The fatty acid profile, comprising C18 : 1ω7c as the major component and C10 : 0 3-OH as the character

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5

Lee, Myungjin, Song-Geun Woo, Giho Park, and Myung Kyum Kim. "Paracoccus caeni sp. nov., isolated from sludge." International Journal of Systematic and Evolutionary Microbiology 61, no. 8 (2011): 1968–72. http://dx.doi.org/10.1099/ijs.0.017897-0.

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A Gram-negative, non-motile bacterium, designated MJ17T, was isolated from sludge at the Daejeon sewage disposal plant in South Korea. Comparative 16S rRNA gene sequence analysis showed that strain MJ17T belonged to the genus Paracoccus in the family Rhodobacteraceae of the class Alphaproteobacteria. 16S rRNA gene sequence similarities between strain MJ17T and type strains of species of the genus Paracoccus were 94.1–97.4 %. The highest similarities were between strain MJ17T and Paracoccus homiensis DD-R11T, Paracoccus zeaxanthinifaciens ATCC 21588T and Paracoccus alcaliphilus JCM 7364T (97.4,

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6

Heo, Jun, Ha-Young Cho, Jeong-Seon Kim, Seung-Beom Hong, Soon-Wo Kwon, and Soo-Jin Kim. "Paracoccus suum sp. nov., isolated from a pig farm dust collector." International Journal of Systematic and Evolutionary Microbiology 69, no. 4 (2019): 970–74. http://dx.doi.org/10.1099/ijsem.0.003226.

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A Gram-stain-negative, strictly aerobic, non-motile, non-spore-forming, coccoid- or short rod-shaped bacterial strain, designated SC2-6T, was isolated from a dust collector of a pig farm located in Wanju-gun, Jeollabuk-do, Republic of Korea. Strain SC2-6T grew within the ranges of 10–37 °C (28–30 °C, optimally), pH 6.0–10.0 (pH 7.0–8.0, optimally) and 0–3% NaCl (w/v). The 16S rRNA gene sequence similarity of strain SC2-6T showed the highest values to Paracoccus kondratievae GBT (96.3%), Paracoccus denitrificans DSM 413T (96.3%) and Paracoccus sanguinis 5503T (96.1%). The phylogenetic tree base

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7

Liu, Yang, Tao Pei, and Honghui Zhu. "Paracoccus bengalensis is a later heterotypic synonym of Paracoccus versutu." International Journal of Systematic and Evolutionary Microbiology 70, no. 3 (2020): 2049–52. http://dx.doi.org/10.1099/ijsem.0.004014.

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The present study aimed to examine the taxonomic relationship between two species, Paracoccus bengalensis Ghosh et al. 2006 and Paracoccus versutus (Harrison 1983) Katayama et al. 1996. Comparison of 16S rRNA gene sequences revealed that P. bengalensis JJJT was highly similar (99.9 %) to P. versutus A2T. The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that the two strains formed a tight cluster within the genus Paracoccus . Whole genomic comparison between the two strains showed a digital DNA–DNA hybridization estimate of 82. 0 % and an average nucleotide identi

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8

Lyu, Lina, Bin Zhi, Qiliang Lai, Zongze Shao, and Zhiqiang Yu. "Paracoccus xiamenensis sp. nov., isolated from seawater on the Xiamen." International Journal of Systematic and Evolutionary Microbiology 70, no. 7 (2020): 4285–90. http://dx.doi.org/10.1099/ijsem.0.004284.

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Strain 12-3T was isolated from seawater of the Guanyinshan Coast, Xiamen, Fujian Province, PR China. The bacterium was Gram-stain-negative, rod-shaped, aerobic, oxidase-positive and catalase-negative. Growth of strain 12-3T occurred at 10–37 °C (optimum, 20–30 °C), at pH 5.0–11.0 (optimum, pH 7.0–8.0) and at a salinity range of 0–10 % (optimum, 3–5 %). The results of phylogenetic analysis based on its 16S rRNA gene sequence indicated that strain 12-3T belonged to the genus Paracoccus and had the highest sequence similarity to Paracoccus lutimaris HDM-25T (97.4 %), followed by Paracoccus isopor

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9

MAZZEO, GAETANA, JOSÉ CARLOS FRANCO, and AGATINO RUSSO. "A new Paracoccus species from Palaearctic region (Hemiptera, Sternorrhyncha, Coccoidea, Pseudococcidae)." Zootaxa 2274, no. 1 (2009): 62–68. http://dx.doi.org/10.11646/zootaxa.2274.1.4.

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A new mealybug species, Paracoccus leucadendri sp. nov., is described from Portugal. This is the first record of a Paracoccus species from Europe. It is suggested that its presence in Portugal is the result of a fortuitous introduction with its host plant, Leucadendron sp. (Proteaceae). An identification key is presented to distinguish this new Paracoccus species from other mealybug species reported on Proteaceae in the world.

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10

Zhang, Ya-Xi, Xin Li, Fang-Ling Li, et al. "Paracoccus alkanivorans sp. nov., isolated from a deep well with oil reservoir water." International Journal of Systematic and Evolutionary Microbiology 70, no. 4 (2020): 2312–17. http://dx.doi.org/10.1099/ijsem.0.004036.

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A Gram-stain-negative, non-motile and ovoid bacterial strain, designated 4-2T, was isolated from oil-contaminated water which was collected from Xinjiang Province, north-west PR China. The 16S rRNA gene sequence analysis showed that strain 4-2T belonged to the genus Paracoccus . The species with highest similarity to strain 4-2T was Paracoccus saliphilus YIM 90738T (97.83 %), followed by ‘ Paracoccus siganidrum ’ M26 (97.83 %) and Paracoccus endophyticus SYSUP0003T (97.25 %). The average nucleotide identity values between 4-2T and three type strains were 84.69, 77.88 and 74.07 %, respectively.

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11

Sheu, Shih-Yi, Sing-Rong Jiang, Chaolun Allen Chen, Jih-Terng Wang, and Wen-Ming Chen. "Paracoccus stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata." International Journal of Systematic and Evolutionary Microbiology 61, no. 9 (2011): 2221–26. http://dx.doi.org/10.1099/ijs.0.028035-0.

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A bacterial strain, designated KTW-16T, was isolated from the reef-building coral Stylophora pistillata, collected from southern Taiwan. Strain KTW-16T was a Gram-negative, facultatively anaerobic, pale-yellow, non-motile short rod. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain KTW-16T belonged to the genus Paracoccus in the Alphaproteobacteria and exhibited 93.7–96.9 % 16S rRNA gene sequence similarity with type strains of species of the genus Paracoccus (96.9 % with Paracoccus alcaliphilus JCM 7364T). Strain KTW-16T grew at 15–40 °C (optimum 35 °C), at pH 6.0–10.0

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12

Hollensteiner, Jacqueline, Dominik Schneider, Anja Poehlein, Thorsten Brinkhoff, and Rolf Daniel. "Pan-genome analysis of six Paracoccus type strain genomes reveal lifestyle traits." PLOS ONE 18, no. 12 (2023): e0287947. http://dx.doi.org/10.1371/journal.pone.0287947.

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The genus Paracoccus capable of inhabiting a variety of different ecological niches both, marine and terrestrial, is globally distributed. In addition, Paracoccus is taxonomically, metabolically and regarding lifestyle highly diverse. Until now, little is known on how Paracoccus can adapt to such a range of different ecological niches and lifestyles. In the present study, the genus Paracoccus was phylogenomically analyzed (n = 160) and revisited, allowing species level classification of 16 so far unclassified Paracoccus sp. strains and detection of five misclassifications. Moreover, we perform

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13

Kim, Young-Ok, Hee Jeong Kong, Sooyeon Park, et al. "Paracoccus fistulariae sp. nov., a lipolytic bacterium isolated from bluespotted cornetfish, Fistularia commersonii." International Journal of Systematic and Evolutionary Microbiology 60, no. 12 (2010): 2908–12. http://dx.doi.org/10.1099/ijs.0.021808-0.

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A Gram-stain-negative, non-motile, non-spore-forming and short rod- or rod-shaped bacterial strain, designated 22-5T, was isolated from a bluespotted cornetfish, Fistularia commersonii, and subjected to taxonomic study. Strain 22-5T grew optimally at 30 °C and in the presence of 2–5 % (w/v) NaCl. Phylogenetic analyses based on 16S rRNA gene sequences revealed that strain 22-5T belonged to the genus Paracoccus and joined the cluster comprising Paracoccus homiensis DD-R11T and Paracoccus zeaxanthinifaciens ATCC 21588T, with which strain 22-5T exhibited 97.4 and 96.9 % 16S rRNA gene sequence simi

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14

Zhang, Jiang-Tao, Chao-Qun Li, Xing-Ping Liu, and Yan Wang. "Two new species of the mealybug genus Paracoccus from Jiangxi, South China (Hemiptera, Coccomorpha, Pseudococcidae)." ZooKeys 1197 (April 3, 2024): 1–11. http://dx.doi.org/10.3897/zookeys.1197.118778.

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Two new mealybug species, Paracoccus gillianwatsonae Zhang, sp. nov. and P. wui Zhang, sp. nov., collected from Jiangxi, South China, are described and illustrated based on the morphology of adult females. Paracoccus gillianwatsonae is similar to P. burnerae (Brain, 1915), but it differs in having fewer pairs of cerarii, and in lacking both ventral oral collar tubular ducts on the margins of the head and translucent pores on the hind femur. Paracoccus wui resembles P. keralae Williams, 2004 and P. neocarens (Lit, 1992), but it differs in lacking ventral oral collar tubular ducts on the margins

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15

Zhang, Jiang-Tao, Chao-Qun Li, Xing-Ping Liu, and Yan Wang. "Two new species of the mealybug genus Paracoccus from Jiangxi, South China (Hemiptera, Coccomorpha, Pseudococcidae)." ZooKeys 1197 (April 3, 2024): 1–11. https://doi.org/10.3897/zookeys.1197.118778.

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Two new mealybug species, <i>Paracoccus gillianwatsonae</i> Zhang, sp. nov. and <i>P. wui</i> Zhang, sp. nov., collected from Jiangxi, South China, are described and illustrated based on the morphology of adult females. <i>Paracoccus gillianwatsonae</i> is similar to <i>P. burnerae</i> (Brain, 1915), but it differs in having fewer pairs of cerarii, and in lacking both ventral oral collar tubular ducts on the margins of the head and translucent pores on the hind femur. <i>Paracoccus wui</i> resembles <i>P. keralae</i> Williams, 2004 and <i>P. neocarens</i> (Lit, 1992), but it differs in lacking

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16

Rai, Anusha, Smita N, Suresh G, et al. "Paracoccus aeridis sp. nov., an indole-producing bacterium isolated from the rhizosphere of an orchid, Aerides maculosa." International Journal of Systematic and Evolutionary Microbiology 70, no. 3 (2020): 1720–28. http://dx.doi.org/10.1099/ijsem.0.003962.

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A Gram-stain-negative, non-motile, coccoid-shaped, catalase- and oxidase-positive, non-denitrifying, neutrophilic bacterium designated as strain JC501T was isolated from an epiphytic rhizosphere of an orchid, Aerides maculosa, growing in the Western Ghats of India. Phylogenetic analyses based on the 16S rRNA gene sequence indicated that strain JC501T belonged to the genus Paracoccus and had the highest levels of sequence identity with Paracoccus marinus KKL-A5T (98.9 %), Paracoccus contaminans WPAn02T (97.3 %) and other members of the genus Paracoccus (<97.3 %). Strain JC501T produced indol

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17

Zhang, Kun, Qi Zeng, Rouyun Jiang, et al. "Three Novel Marine Species of Paracoccus, P. aerodenitrificans sp. nov., P. sediminicola sp. nov. and P. albus sp. nov., and the Characterization of Their Capability to Perform Heterotrophic Nitrification and Aerobic Denitrification." Microorganisms 11, no. 6 (2023): 1532. http://dx.doi.org/10.3390/microorganisms11061532.

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Heterotrophic nitrification–aerobic denitrification (HN-AD) is an efficient nitrogen removal process and the genus Paracoccus is one important group of the HN-AD bacteria. During an investigation of the microbial diversity in marine ranching of the Pearl River Estuary (PR China), three bacterial strains, designated SCSIO 75817T, SCSIO 76264T and SCSIO 80058T, were isolated from sediments. Phylogenetic analyses based on 16S rRNA gene sequences indicated that the three strains belonged to the genus Paracoccus and their closest neighbors were P. isoporae DSM 22220T (97.6–98.0%), P. aurantiacus CG

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18

Ye, Jianing, Dan Lin, Mu Zhang, et al. "Paracoccus aurantiacus sp. nov., isolated from shallow-sea hydrothermal systems off Kueishantao Island." International Journal of Systematic and Evolutionary Microbiology 70, no. 4 (2020): 2554–59. http://dx.doi.org/10.1099/ijsem.0.004068.

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An orange-pigmented, short-rod-shaped, aerobic and non-motile bacterial strain, designated TK008T, was isolated from the shallow-sea hydrothermal systems off Kueishantao Island in Taiwan, China, and it was studied by using a polyphasic taxonomic approach. Cells were Gram-stain-negative, and catalase- and oxidase-positive. Strain TK008T exhibited highest 16S rRNA gene sequence similarity of 97.1 % to Paracoccus pacificus F14T. The phylogenetic trees based on 16S rRNA gene sequences showed that strain TK008T was a member of the genus Paracoccus . Digital DNA–DNA hybridization values between stra

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19

Nakamura, Akira. "Paracoccus laeviglucosivorans sp. nov., an l-glucose-utilizing bacterium isolated from soil." International Journal of Systematic and Evolutionary Microbiology 65, Pt_11 (2015): 3878–84. http://dx.doi.org/10.1099/ijsem.0.000508.

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Strain 43PT was isolated as an l-glucose-utilizing bacterium from soil in Japan. Cells of the strain were Gram-stain-negative, aerobic and non-motile cocci. The 16S rRNA gene sequence of the strain showed high similarity to that of Paracoccus limosus (98.5 %). Phylogenetic analyses based on 16S rRNA gene sequences revealed that this strain belongs to the genus Paracoccus. Strain 43PT contained Q-10 as the sole isoprenoid quinone. The major cellular fatty acids were C18 : 1ω7c or C18 : 1ω6c and C16 : 0, and C18 : 0, C18 : 1ω9c, C10 : 0 3-OH and summed feature 2 were detected as minor components

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20

Kim, Byung-Yong, Hang-Yeon Weon, Seung-Hee Yoo, et al. "Paracoccus homiensis sp. nov., isolated from a sea-sand sample." International Journal of Systematic and Evolutionary Microbiology 56, no. 10 (2006): 2387–90. http://dx.doi.org/10.1099/ijs.0.64275-0.

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Strain DD-R11T, isolated from a sea-sand sample from Homi Cape, Pohang city, South Korea, was a Gram-negative, aerobic, motile, non-spore-forming, rod- to ovoid-shaped bacterium. Colonies grown on marine agar were circular, convex and colourless to creamy white. Growth occurred between 10 and 40 °C (optimum 25–30 °C) and at pH 5.0–9.0 (optimum pH 6.0–8.0). The strain could grow in up to 15 % NaCl (optimum 3–5 % NaCl). According to 16S rRNA gene sequence analysis, the strain was a member of the genus Paracoccus in the Alphaproteobacteria. Sequence similarities to type strains of the genus Parac

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21

WATSON, GILLIAN W. "A checklist of the scale insects (Hemiptera: Coccomorpha) of Kenya, with some new combinations." Zootaxa 5060, no. 4 (2021): 515–32. http://dx.doi.org/10.11646/zootaxa.5060.4.3.

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The checklist of scale insect species recorded from Kenya comprises 14 families, 128 genera and 304 species, of which 207 (68.0%) are probably of African origin, 91 (29.9%) have been introduced from outside Africa and six (2.0%) are of unknown origin. Out of the 207 African species, only 11 (5.3%) have been recorded damaging plants, whereas out of the 91 introduced species, 45 (49.5%) have caused or are highly likely to cause plant damage in Kenya. The most economically important scale insect families in Kenya are (in order of importance) the Pseudococcidae, Coccidae and Diaspididae. Four new

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22

Ellenrieder, Natalia Von, Gillian W. Watson, Scott A. Kinnee, José C. Franco, and Gaetana Mazzeo. "Paracoccus leucadendri Mazzeo & Franco in Mazzeo, Franco & Russo, 2009, a junior synonym of Paracoccus hakeae (Williams, 1985) comb. nov. (Coccomorpha: Pseudococcidae)." Zootaxa 4093, no. 4 (2016): 552–58. https://doi.org/10.11646/zootaxa.4093.4.6.

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Ellenrieder, Natalia Von, Watson, Gillian W., Kinnee, Scott A., Franco, José C., Mazzeo, Gaetana (2016): Paracoccus leucadendri Mazzeo & Franco in Mazzeo, Franco & Russo, 2009, a junior synonym of Paracoccus hakeae (Williams, 1985) comb. nov. (Coccomorpha: Pseudococcidae). Zootaxa 4093 (4): 552-558, DOI: 10.11646/zootaxa.4093.4.6

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23

Jung, Yong-Taek, Sooyeon Park, Jung-Sook Lee, and Jung-Hoon Yoon. "Paracoccus lutimaris sp. nov., isolated from a tidal flat sediment." International Journal of Systematic and Evolutionary Microbiology 64, Pt_8 (2014): 2763–69. http://dx.doi.org/10.1099/ijs.0.064865-0.

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A Gram-negative, coccoid or oval-shaped and gliding bacterial strain, designated HDM-25T, belonging to the Alphaproteobacteria , was isolated from a tidal flat sediment of the Yellow Sea, Korea, and was subjected to a polyphasic taxonomic study. Strain HDM-25T grew optimally at pH 7.0–8.0, at 30 °C and in the presence of 2–3 % (w/v) NaCl. Neighbour-joining, maximum-likelihood and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences showed that strain HDM-25T fell within the clade comprising the species of the genus Paracoccus , clustering with the type strain of Paracoccus ami

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24

Lee, C. M., та C. C. Wang. "Denitrification with ɛ-caprolactam by acclimated mixed culture and by pure culture of bacteria isolated from polyacrylonitrile fibre manufactured wastewater treatment system". Water Science and Technology 49, № 5-6 (2004): 341–54. http://dx.doi.org/10.2166/wst.2004.0773.

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The aim of this study is to isolate denitrifying bacteria utilizing ɛ-caprolactam as the substrate, from a polyacrylonitrile fibre manufactured wastewater treatment system. The aim is also to compare the performance of PAN (polyacrylonitrile) mixed bacteria cultures acclimated to ɛ-caprolactam and isolated pure strain for treating different initial e-caprolactam concentrations from synthetic wastewater under anoxic conditions. The result showed that the PAN mixed bacteria cultures acclimated to e-caprolactam could utilize 1538.5 mg/l of ɛ-caprolactam as a substrate for denitrification. Suffici

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25

Darlis, Viny Volcherina, Jhon Pontas Bakara, M. Mardhiansyah, and Pebriandi. "Pemanfaatan Ekstrak Daun Sirsak (Annona muricata) sebagai Pestisida Nabati Terhadap Pengendalian Hama Kutu Putih (Paracoccus marginatus) pada Pembibitan Akasia (Acacia crassicarpa)." Journal of Tropical Silviculture 15, no. 01 (2024): 31–35. http://dx.doi.org/10.29244/j-siltrop.15.01.31-35.

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Akasia (Acacia crassicarpa) merupakan salah satu famili Fabaceae yang banyak direkomendasikan untuk ditanam dalam rangka rehabilitasi lahan kritis maupun pembangunan HTI, karena pertumbuhannya yang cepat, adaptasi yang luas, dan tahan terhadap kondisi yang kurang menguntungkan. Akasia di persemaian sering diserang oleh berbagai hama, salah satunya adalah hama kutu putih (Paracoccus marginatus). Upaya pengendalian hama Paracoccus marginatus pada daun sirsak (Annona muricate) yang saat ini dilakukan umumnya menggunakan cara kimiawi. Ekstrak merupakan salah satu alternatif yang dapat digunakan se

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Lee, Myung-Jin, and Sang-Seob Lee. "Paracoccus limosus sp. nov., isolated from activated sludge in a sewage treatment plant." International Journal of Systematic and Evolutionary Microbiology 63, Pt_4 (2013): 1311–16. http://dx.doi.org/10.1099/ijs.0.035212-0.

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Two strains of Gram-negative, catalase- and oxidase-positive, coccus-shaped bacteria, designated NB88T and LNB004, were isolated from activated sludge in the Mae-san sewage treatment plant in South Korea. They were characterized in a polyphasic taxonomic study based on phenotypic, phylogenetic and genotypic approaches. Comparative 16S rRNA gene sequence analysis indicated that strains NB88T and LNB004 represented a novel subline within the genus Paracoccus in the family Rhodobacteraceae . According to 16S rRNA gene sequence comparisons, strains NB88T and LNB004 were indistinguishable and showe

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Sun, Xuelian, Patrick Luo, and Mingshun Li. "Paracoccus angustae sp. nov., isolated from soil." International Journal of Systematic and Evolutionary Microbiology 65, Pt_10 (2015): 3469–75. http://dx.doi.org/10.1099/ijsem.0.000440.

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A Gram-stain-negative, coccus-shaped, aerobic bacterium, strain E6T, was isolated from soil. 16S rRNA gene sequence analysis revealed a cluster containing strain E6T and Paracoccus sediminis CMB17T (the highest 16S rRNA gene similarity of 97.2 %). The other strains investigated showed 16S rRNA gene sequence similarities of less than 97 % to strain E6T. The DNA–DNA relatedness between strain E6T and P. sediminis DSM 26170T was 59.2 %. Strain E6T also shows some differences compared with other Paracoccus strains such as motility and inability to utilize lactate and propionate as sole carbon sour

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28

Zhu, Shan, Qi Zhao, Gaosen Zhang, et al. "Paracoccus tibetensis sp. nov., isolated from Qinghai-Tibet Plateau permafrost." International Journal of Systematic and Evolutionary Microbiology 63, Pt_5 (2013): 1902–5. http://dx.doi.org/10.1099/ijs.0.041905-0.

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Strain Tibet-S9a3T was isolated from Qinghai-Tibet Plateau permafrost, China. The isolate was a Gram-negative, non-motile, non-spore-forming short rod. The 16S rRNA gene sequence indicated that strain Tibet-S9a3T was a member of the genus Paracoccus and was closely related to Paracoccus aestuarii B7T (98.2 % 16S rRNA gene sequence similarity), ‘P. beibuensis’ JLT1284 (97.9 %), P. homiensis DD-R11T (97.4 %), P. zeaxanthinifaciens ATCC 21588T (97.4 %) and other type strains of the genus (93.7–96.7 %). The G+C content of the genomic DNA was 69.1 mol% and the major isoprenoid quinone was ubiquinon

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Pebriandi, Pebriandi, Ewi Irfani, Windy Sukma Aditia, M. Mardhiansyah, and Pebriandi Pebriandi. "Effectiveness of Carica Papaya Leaves and Tinospora Crispa Stems Against Paracoccus Marginatus in Eucalyptus Nursery." Jurnal Biologi Tropis 25, no. 2 (2025): 1275–82. https://doi.org/10.29303/jbt.v25i2.8605.

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One of the pests that attacks Eucalyptus pellita is Paracoccus marginatus. Currently, chemical pesticides are used to control these pests, which can harm health and the environment. As a result, we need a more environmentally friendly alternative biopesticides that comes from a combination of Carica papaya leaf and Tinospora crispa stem extracts. The aim of this research was to determine the effect of Carica papaya leaf and Tinospora crispa stem extracts on Paracoccus marginatus pests in eucalyptus nurseries and to determine the best concentration for controlling Paracoccus marginatus pestsThe

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Coiffier, G., A. Gougeon, J. D. Albert, and H. Le Bars. "Arthrite à Paracoccus yeei." Médecine et Maladies Infectieuses 43, no. 6 (2013): 254–55. http://dx.doi.org/10.1016/j.medmal.2013.04.004.

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Steinrücke, P. "Genetics of Paracoccus denitrificans." FEMS Microbiology Letters 104, no. 1-2 (1993): 83–117. http://dx.doi.org/10.1016/0378-1097(93)90505-v.

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Lipski, A., K. Reichert, B. Reuter, C. Sproer, and K. Altendorf. "Identification of bacterial isolates from biofilters as Paracoccus alkenifer sp. nov. and Paracoccus solventivorans with emended description of Paracoccus solventivorans." International Journal of Systematic Bacteriology 48, no. 2 (1998): 529–36. http://dx.doi.org/10.1099/00207713-48-2-529.

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Nguyen, Ngoc-Lan, Yeon-Ju Kim, Van-An Hoang, Bao-Tram Tran, Huong-Son Pham, and Deok-Chun Yang. "Paracoccus panacisoli sp. nov., isolated from a forest soil cultivated with Vietnamese ginseng." International Journal of Systematic and Evolutionary Microbiology 65, Pt_5 (2015): 1491–97. http://dx.doi.org/10.1099/ijs.0.000125.

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A novel bacterial strain, designated DCY94T, was isolated from forest soil cultivated with ginseng in Vietnam. The strain was Gram-reaction-negative, facultatively anaerobic, non-motile, rod-shaped and catalase- and oxidase-positive. 16S rRNA gene sequence analysis demonstrated that strain DCY94T was closely related to Paracoccus sphaerophysae Zy-3T (97.5 % 16S rRNA gene sequence similarity) and Paracoccus caeni MJ17T (96.9 %). The fatty acid profile of strain DCY94T contained a predominant amount of summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c; 88.4 %) and moderate to small quantities of C8

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34

Masood Hassan, Muhammad, Tammey Naab, and Ali Afsari. "Paracoccus yeei, a Rare Cause of Ocular Infection." American Journal of Clinical Pathology 152, Supplement_1 (2019): S132. http://dx.doi.org/10.1093/ajcp/aqz125.010.

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Abstract Objectives Paracocci are nonfermenting obligate aerobes. The genus Paracoccus is classified in the family Rhodobacteraceae and contains 31 species. Gram stains reveal gram-negative cocci, diplococci, or coccobacilli/short rods, sometimes described as having an O shape due to peripheral stain. It may be confused with Neisseria sp. or Moraxella sp. due to oxidase positivity. Paracoccus yeei, a rare cause of infection in patients ranging from 6 weeks to 77 years, has been isolated from abdominal dialysate, wounds (ankle, toe), incision drainage, cerebrospinal fluid, bile, skin, blood, ea

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35

McGinnis, Jana M., Jocelyn A. Cole, Michelle C. Dickinson, et al. "Paracoccus sanguinis sp. nov., isolated from clinical specimens of New York State patients." International Journal of Systematic and Evolutionary Microbiology 65, Pt_6 (2015): 1877–82. http://dx.doi.org/10.1099/ijs.0.000193.

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Eight independent isolates of a Gram-reaction-negative, non-motile rod, were recovered from clinical specimens of New York State patients between the years 2005 and 2013. Four of these isolates were characterized in a taxonomic study using a polyphasic approach that involved phenotypic, phylogenetic and genotypic methodologies. Based on 16S rRNA gene sequence similarity and phylogenetic analysis, the closest relative type strain of the isolates is Paracoccus sphaerophysae HAMBI 3106T (97.7 % 16S rRNA gene sequence similarity). Among the four isolates, the 16S rRNA gene sequence similarity is 1

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Li, Xue, Chi Zhou, Ming Li, Qingzhuang Zhang, Lei Su, and Xin Li. "Paracoccus broussonetiae subsp. drimophilus subsp. nov., a Novel Subspecies Salt-Tolerant Endophytic Bacterium from Maize Root in Hunan." Life 15, no. 3 (2025): 354. https://doi.org/10.3390/life15030354.

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In an investigation exploring endophytic microbiota from agricultural crops, an aerobic, non-motile, Gram-negative, coccobacillus-shaped bacterial isolate, designated as strain NGMCC 1.201697T, was isolated from maize roots in Hunan Province, China. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain NGMCC 1.201697T belonged to the genus Paracoccus, showing the highest sequence similarity to Paracoccus broussonetiae CPCC 101403T (99.86%). The average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) were 98.57% and 87.90% between the novel isolate and i

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Liu, Xing-Yu, Bao-Jun Wang, Cheng-Ying Jiang, and Shuang-Jiang Liu. "Paracoccus sulfuroxidans sp. nov., a sulfur oxidizer from activated sludge." International Journal of Systematic and Evolutionary Microbiology 56, no. 11 (2006): 2693–95. http://dx.doi.org/10.1099/ijs.0.64548-0.

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Bacterial strain LW36T was isolated from activated sludge of a wastewater-treatment bioreactor. Cells of strain LW36T were Gram-negative coccoids to short rods, 1.0–1.2×0.5 μm in size. Colonies were cream-coloured, smooth and circular. Strain LW36T was hetero-organotrophic and chemolithotrophic and was able to use reduced sulfur as an energy resource. Growth was observed at 25–36 °C and pH 5–10. The most abundant cellular fatty acid of strain LW36T was C18 : 1 ω7c (64.2 %). The sole respiratory quinone was ubiquinone-10. The G+C content of the genomic DNA was 61.3 mol% (T m). 16S rRNA gene seq

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GEORGE, CHRISTINA L., and STUART J. FERGUSON. "NADH dehydrogenase of Paracoccus denitrificans." Biochemical Society Transactions 14, no. 6 (1986): 1205–6. http://dx.doi.org/10.1042/bst0141205.

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Zalman, L. S., and H. Nikaido. "Dimeric porin from Paracoccus denitrificans." Journal of Bacteriology 162, no. 1 (1985): 430–33. http://dx.doi.org/10.1128/jb.162.1.430-433.1985.

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Doronina, Nina V., Yuri A. Trotsenko, Boris B. Kuznetzov, and Tatjana P. Tourova. "Emended description of Paracoccus kondratievae." International Journal of Systematic and Evolutionary Microbiology 52, no. 2 (2002): 679–82. http://dx.doi.org/10.1099/00207713-52-2-679.

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Crossman, Lisa C., James W. B. Moir, Stephen Spiro, and David J. Richardson. "Heterotrophic nitrification in Paracoccus denitrificans." Biochemical Society Transactions 26, no. 3 (1998): S208. http://dx.doi.org/10.1042/bst026s208.

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42

Gilmour, Raymond, Celia F. Goodhew, and Graham W. Pettigrew. "Cytochrome c′ of Paracoccus denitrificans." Biochimica et Biophysica Acta (BBA) - Bioenergetics 1059, no. 2 (1991): 233–38. http://dx.doi.org/10.1016/s0005-2728(05)80208-7.

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43

Husain, Mazhar, Victor L. Davidson, and Alan J. Smith. "Properties of Paracoccus denitrificans amicyanin." Biochemistry 25, no. 9 (1986): 2431–36. http://dx.doi.org/10.1021/bi00357a020.

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44

Urakami, T., H. Araki, H. Oyanagi, K. I. Suzuki, and K. Komagata. "Paracoccus aminophilus sp. nov. and Paracoccus aminovorans sp. nov., Which Utilize N,N-Dimethylformamide." International Journal of Systematic Bacteriology 40, no. 3 (1990): 287–91. http://dx.doi.org/10.1099/00207713-40-3-287.

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45

Lee, Jae Hyung, Yun Sook Kim, Tae-Jin Choi, Won Jae Lee, and Young Tae Kim. "Paracoccus haeundaensis sp. nov., a Gram-negative, halophilic, astaxanthin-producing bacterium." International Journal of Systematic and Evolutionary Microbiology 54, no. 5 (2004): 1699–702. http://dx.doi.org/10.1099/ijs.0.63146-0.

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An aerobic, non-motile, Gram-negative, orange-pigmented, rod-shaped, astaxanthin-producing marine bacterium was isolated from the Haeundae Coast, Korea. This strain, BC74171T, produced carotenoids, mainly astaxanthin. All the type strains of the genus Paracoccus were compared with strain BC74171T using 16S rRNA gene sequence analysis, fatty acid patterns and physiological reaction profiles. Based on the results of these analyses, it is proposed that strain BC74171T represents a novel species, Paracoccus haeundaensis sp. nov. The type strain is BC74171T (=KCCM 10460T=LMG P-21903T).

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46

Chen, Ming-Hui, Shih-Yi Sheu, Chaolun Allen Chen, Jih-Terng Wang, and Wen-Ming Chen. "Paracoccus isoporae sp. nov., isolated from the reef-building coral Isopora palifera." International Journal of Systematic and Evolutionary Microbiology 61, no. 5 (2011): 1138–43. http://dx.doi.org/10.1099/ijs.0.023333-0.

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A bacterial strain, designated SW-3T, was isolated from the reef-building coral Isopora palifera, from Southern Taiwan, and was characterized by using a polyphasic taxonomic approach. Cells of strain SW-3T were Gram-reaction-negative, aerobic, rod-shaped and motile by means of monopolar flagella and formed cream–white colonies. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain SW-3T belonged to the genus Paracoccus and its most closely related neighbours were P. aestuarii B7T, P. homiensis DD-R11T, P. marinus KKL-A5T, P. denitrificans DSM 413T and P. zeaxanthinifaciens

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ČIŽINSKÁ, S., V. MATĚJŮ, and T. JANOCH. "Water denitrification with immobilized cells of Paracoccus denitrificans." Kvasny Prumysl 34, no. 7 (1988): 202–4. http://dx.doi.org/10.18832/kp1988031.

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48

Sun, Li-Na, Jun Zhang, Soon-Wo Kwon, Jian He, Shun-Gui Zhou, and Shun-Peng Li. "Paracoccus huijuniae sp. nov., an amide pesticide-degrading bacterium isolated from activated sludge of a wastewater biotreatment system." International Journal of Systematic and Evolutionary Microbiology 63, Pt_3 (2013): 1132–37. http://dx.doi.org/10.1099/ijs.0.044180-0.

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A facultatively anaerobic, non-spore-forming, non-motile, catalase- and oxidase-positive, Gram-reaction-negative, coccoid to short rod-shaped strain, designated FLN-7T, was isolated from activated sludge of a wastewater biotreatment facility. The strain was able to hydrolyse amide pesticides (e.g. diflubenzuron, propanil, chlorpropham and dimethoate) through amide bond cleavage. Strain FLN-7T grew at 4–42 °C (optimum 28 °C), at pH 5.0–8.0 (optimum pH 7.0) and with 0–5.0 % (w/v) NaCl (optimum 1.0 %). The major respiratory quinone was ubiquinone-10. The major cellular fatty acid was C18 : 1ω7c.

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Deng, Zhen-Shan, Long-Fei Zhao, Lin Xu, et al. "Paracoccus sphaerophysae sp. nov., a siderophore-producing, endophytic bacterium isolated from root nodules of Sphaerophysa salsula." International Journal of Systematic and Evolutionary Microbiology 61, no. 3 (2011): 665–69. http://dx.doi.org/10.1099/ijs.0.021071-0.

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An aerobic, brown-pigmented, non-spore-forming, endophytic bacterium, designated strain Zy-3T, was isolated from root nodules of Sphaerophysa salsula, a native leguminous herb belonging to the family Leguminosae growing in north-western China. Cells of strain Zy-3T were non-motile, Gram-negative rods. Strain Zy-3T produced siderophores and showed antifungal activity. Phylogenetic analysis of the 16S rRNA gene sequence indicated that the closest relative of this organism was Paracoccus halophilus HN-182T (96.6 % sequence similarity). On the basis of genotype, fatty acid patterns and physiologic

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50

Ishii, K., H. Sagami, and K. Ogura. "A novel prenyltransferase from Paracoccus denitrificans." Biochemical Journal 233, no. 3 (1986): 773–77. http://dx.doi.org/10.1042/bj2330773.

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A new polyprenyltransferase catalysing the formation of Z-double bonds was found and partially purified from extracts of Paracoccus denitrificans. The enzyme catalysed a consecutive condensation of isopentenyl diphosphate with EE-farnesyl diphosphate as a primer to produce EE-farnesyl-all-Z-hexaprenyl diphosphate (ZE-mixed nonaprenyl diphosphate) as the final product. Not only EE-farnesyl diphosphate but also neryl diphosphate, ZE-farnesyl diphosphate, ZEE-geranylgeranyl diphosphate and ZZEE-pentaprenyl diphosphate were all accepted as substrates. This polyprenyltransferase required detergent

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