Relevant bibliographies by topics / Parent-of-origin-specific Expression

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  1. Journal articles
  2. Dissertations / Theses
  3. Book chapters

Academic literature on the topic 'Parent-of-origin-specific Expression'

Author: Grafiati
Published: 4 June 2021
Last updated: 1 February 2022

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Journal articles on the topic "Parent-of-origin-specific Expression"

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Hitchcock, Thomas J., and Andy Gardner. "Parent-of-origin specific gene expression and dispersal." Current Opinion in Behavioral Sciences 25 (February 2019): 36–43. http://dx.doi.org/10.1016/j.cobeha.2018.06.007.

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Wu, Xin, David A. Galbraith, Paramita Chatterjee, Hyeonsoo Jeong, Christina M. Grozinger, and Soojin V. Yi. "Lineage and Parent-of-Origin Effects in DNA Methylation of Honey Bees (Apis mellifera) Revealed by Reciprocal Crosses and Whole-Genome Bisulfite Sequencing." Genome Biology and Evolution 12, no. 8 (2020): 1482–92. http://dx.doi.org/10.1093/gbe/evaa133.

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Abstract Parent-of-origin methylation arises when the methylation patterns of a particular allele are dependent on the parent it was inherited from. Previous work in honey bees has shown evidence of parent-of-origin-specific expression, yet the mechanisms regulating such pattern remain unknown in honey bees. In mammals and plants, DNA methylation is known to regulate parent-of-origin effects such as genomic imprinting. Here, we utilize genotyping of reciprocal European and Africanized honey bee crosses to study genome-wide allele-specific methylation patterns in sterile and reproductive individuals. Our data confirm the presence of allele-specific methylation in honey bees in lineage-specific contexts but also importantly, though to a lesser degree, parent-of-origin contexts. We show that the majority of allele-specific methylation occurs due to lineage rather than parent-of-origin factors, regardless of the reproductive state. Interestingly, genes affected by allele-specific DNA methylation often exhibit both lineage and parent-of-origin effects, indicating that they are particularly labile in terms of DNA methylation patterns. Additionally, we re-analyzed our previous study on parent-of-origin-specific expression in honey bees and found little association with parent-of-origin-specific methylation. These results indicate strong genetic background effects on allelic DNA methylation and suggest that although parent-of-origin effects are manifested in both DNA methylation and gene expression, they are not directly associated with each other.
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Gregg, C., J. Zhang, J. E. Butler, D. Haig, and C. Dulac. "Sex-Specific Parent-of-Origin Allelic Expression in the Mouse Brain." Science 329, no. 5992 (2010): 682–85. http://dx.doi.org/10.1126/science.1190831.

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Springer, Nathan M., and Robert M. Stupar. "Allele-Specific Expression Patterns Reveal Biases and Embryo-Specific Parent-of-Origin Effects in Hybrid Maize." Plant Cell 19, no. 8 (2007): 2391–402. http://dx.doi.org/10.1105/tpc.107.052258.

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McKeown, Peter C., Sylvia Laouielle-Duprat, Pjotr Prins, et al. "Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thaliana seeds." BMC Plant Biology 11, no. 1 (2011): 113. http://dx.doi.org/10.1186/1471-2229-11-113.

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Stupar, Robert M., Peter J. Hermanson, and Nathan M. Springer. "Nonadditive Expression and Parent-of-Origin Effects Identified by Microarray and Allele-Specific Expression Profiling of Maize Endosperm." Plant Physiology 145, no. 2 (2007): 411–25. http://dx.doi.org/10.1104/pp.107.101428.

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Oldroyd, Benjamin P., and Boris Yagound. "Parent-of-origin effects, allele-specific expression, genomic imprinting and paternal manipulation in social insects." Philosophical Transactions of the Royal Society B: Biological Sciences 376, no. 1826 (2021): 20200425. http://dx.doi.org/10.1098/rstb.2020.0425.

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Haplo-diploidy and the relatedness asymmetries it generates mean that social insects are prime candidates for the evolution of genomic imprinting. In single-mating social insect species, some genes may be selected to evolve genomic mechanisms that enhance reproduction by workers when they are inherited from a female. This situation reverses in multiple mating species, where genes inherited from fathers can be under selection to enhance the reproductive success of daughters. Reciprocal crosses between subspecies of honeybees have shown strong parent-of-origin effects on worker reproductive phenotypes, and this could be evidence of such genomic imprinting affecting genes related to worker reproduction. It is also possible that social insect fathers directly affect gene expression in their daughters, for example, by placing small interfering RNA molecules in semen. Gene expression studies have repeatedly found evidence of parent-specific gene expression in social insects, but it is unclear at this time whether this arises from genomic imprinting, paternal manipulation, an artefact of cyto-nuclear interactions, or all of these. This article is part of the theme issue ‘How does epigenetics influence the course of evolution?’
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Golden, Lisa C., Yuichiro Itoh, Noriko Itoh, et al. "Parent-of-origin differences in DNA methylation of X chromosome genes in T lymphocytes." Proceedings of the National Academy of Sciences 116, no. 52 (2019): 26779–87. http://dx.doi.org/10.1073/pnas.1910072116.

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Many autoimmune diseases are more frequent in females than in males in humans and their mouse models, and sex differences in immune responses have been shown. Despite extensive studies of sex hormones, mechanisms underlying these sex differences remain unclear. Here, we focused on sex chromosomes using the “four core genotypes” model in C57BL/6 mice and discovered that the transcriptomes of both autoantigen and anti-CD3/CD28 stimulated CD4+T lymphocytes showed higher expression of a cluster of 5 X genes when derived from XY as compared to XX mice. We next determined if higher expression of an X gene in XY compared to XX could be due to parent-of-origin differences in DNA methylation of the X chromosome. We found a global increase in DNA methylation on the X chromosome of paternal as compared to maternal origin. Since DNA methylation usually suppresses gene expression, this result was consistent with higher expression of X genes in XY cells because XY cells always express from the maternal X chromosome. In addition, gene expression analysis of F1 hybrid mice from CAST × FVB reciprocal crosses showed preferential gene expression from the maternal X compared to paternal X chromosome, revealing that these parent-of-origin effects are not strain-specific. SJL mice also showed a parent-of-origin effect on DNA methylation and X gene expression; however, which X genes were affected differed from those in C57BL/6. Together, this demonstrates how parent-of-origin differences in DNA methylation of the X chromosome can lead to sex differences in gene expression during immune responses.
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Garg, Paras, Christelle Borel, and Andrew J. Sharp. "Detection of Parent-of-Origin Specific Expression Quantitative Trait Loci by Cis-Association Analysis of Gene Expression in Trios." PLoS ONE 7, no. 8 (2012): e41695. http://dx.doi.org/10.1371/journal.pone.0041695.

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Tinarelli, Federico, Celina Garcia-Garcia, Francesco Nicassio, and Valter Tucci. "Parent-of-origin genetic background affects the transcriptional levels of circadian and neuronal plasticity genes following sleep loss." Philosophical Transactions of the Royal Society B: Biological Sciences 369, no. 1637 (2014): 20120471. http://dx.doi.org/10.1098/rstb.2012.0471.

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Sleep homoeostasis refers to a process in which the propensity to sleep increases as wakefulness progresses and decreases as sleep progresses. Sleep is tightly organized around the circadian clock and is regulated by genetic and epigenetic mechanisms. The homoeostatic response of sleep, which is classically triggered by sleep deprivation, is generally measured as a rebound effect of electrophysiological measures, for example delta sleep. However, more recently, gene expression changes following sleep loss have been investigated as biomarkers of sleep homoeostasis. The genetic background of an individual may affect this sleep-dependent gene expression phenotype. In this study, we investigated whether parental genetic background differentially modulates the expression of genes following sleep loss. We tested the progeny of reciprocal crosses of AKR/J and DBA/2J mouse strains and we show a parent-of-origin effect on the expression of circadian, sleep and neuronal plasticity genes following sleep deprivation. Thus, we further explored, by in silico , specific functions or upstream mechanisms of regulation and we observed that several upstream mechanisms involving signalling pathways (i.e. DICER1, PKA), growth factors (CSF3 and BDNF) and transcriptional regulators (EGR2 and ELK4) may be differentially modulated by parental effects. This is the first report showing that a behavioural manipulation (e.g. sleep deprivation) in adult animals triggers specific gene expression responses according to parent-of-origin genomic mechanisms. Our study suggests that the same mechanism may be extended to other behavioural domains and that the investigation of gene expression following experimental manipulations should take seriously into account parent-of-origin effects.
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Dissertations / Theses on the topic "Parent-of-origin-specific Expression"

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Shapiro, Jonathan. "A Novel Approach to Identify Candidate Imprinted Genes in Humans." Thesis, 2012. http://hdl.handle.net/1807/32278.

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Many imprinted genes are necessary for normal human development. Approximately 70 imprinted genes have been identified in humans. I developed a novel approach to identify candidate imprinted genes in humans using the premise that imprinted genes are often associated with nearby parent-of-origin-specific DNA differentially methylated regions (DMRs). I identified parent-of-origin-specific DMRs using sodium bisulfite-based DNA (CpG) methylation profiling of uniparental tissues, mature cystic ovarian teratoma (MCT) and androgenetic complete hydatidiform mole (AnCHM), and biparental tissues, blood and placenta. In support of this approach, the CpG methylation profiling led to the identification of parent-of-origin-specific differentially methylated CpG sites (DMCpGs) in known parent-of-origin-specific DMRs. I found new DMRs for known imprinted genes NAP1L5 and ZNF597. Most importantly, I discovered many new DMCpGs, which were associated with nearby genes, i.e., candidate imprinted genes. Allelic expression analyses of one candidate imprinted gene, AXL, suggested polymorphic imprinting of AXL in human blood.
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Book chapters on the topic "Parent-of-origin-specific Expression"

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Chen, Chen, and Kevin Begcy. "Genome-Wide Identification of Allele-Specific Gene Expression in a Parent-of-Origin Specific Manner." In Methods in Molecular Biology. Springer US, 2019. http://dx.doi.org/10.1007/978-1-4939-9865-4_11.

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