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Relevant bibliographies by topics / PCR Design

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Academic literature on the topic 'PCR Design'

Author: Grafiati

Published: 4 June 2021

Last updated: 1 February 2022

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Journal articles on the topic "PCR Design"

1

Apte, A., and S. Daniel. "PCR Primer Design." Cold Spring Harbor Protocols 2009, no. 3 (2009): pdb.ip65. http://dx.doi.org/10.1101/pdb.ip65.

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Nybo, Kristie. "DNA and General PCR Methods: PCR Primer Design." BioTechniques 46, no. 7 (2009): 505–7. http://dx.doi.org/10.2144/000113179.

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Wojdacz, Tomasz K., Tanni Borgbo, and Lise Lotte Hansen. "Primer design versus PCR bias in methylation independent PCR amplifications." Epigenetics 4, no. 4 (2009): 231–34. http://dx.doi.org/10.4161/epi.9020.

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Graf, D. "Rational primer design greatly improves differential display-PCR (DD- PCR)." Nucleic Acids Research 25, no. 11 (1997): 2239–40. http://dx.doi.org/10.1093/nar/25.11.2239.

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Hoegh, A. M., H. Westh, and G. Lisby. "Basics of diagnostic PCR assay design." Journal of Clinical Virology 36 (January 2006): S28—S29. http://dx.doi.org/10.1016/s1386-6532(06)80805-x.

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Dieffenbach, C. W., T. M. Lowe, and G. S. Dveksler. "General concepts for PCR primer design." Genome Research 3, no. 3 (1993): S30—S37. http://dx.doi.org/10.1101/gr.3.3.s30.

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Agee, Sara. "High-Multiplex Real-Time PCR Design." Genetic Engineering & Biotechnology News 36, no. 7 (2016): 20–21. http://dx.doi.org/10.1089/gen.36.07.12.

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Gahoi, Shachi, Arya L, Rai Anil, and Marla SS. "DPPrimer – A Degenerate PCR Primer Design Tool." Bioinformation 9, no. 18 (2013): 937–40. http://dx.doi.org/10.6026/97320630009937.

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Proudnikov, Dmitri, Vadim Yuferov, Yan Zhou, K. Steven LaForge, Ann Ho, and Mary Jeanne Kreek. "Optimizing primer–probe design for fluorescent PCR." Journal of Neuroscience Methods 123, no. 1 (2003): 31–45. http://dx.doi.org/10.1016/s0165-0270(02)00325-4.

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Rachlin, J., C. Ding, C. Cantor, and S. Kasif. "MuPlex: multi-objective multiplex PCR assay design." Nucleic Acids Research 33, Web Server (2005): W544—W547. http://dx.doi.org/10.1093/nar/gki377.

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Dissertations / Theses on the topic "PCR Design"

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Mann, Tobias. "A thermodynamic approach to PCR primer design." Saarbrücken VDM Verlag Dr. Müller, 2007. http://d-nb.info/988796201/04.

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Steiner, Paul Jamesen. "Oligonucleotide design and codon optimization for PCR-based gene synthesis." Thesis, Massachusetts Institute of Technology, 2009. http://hdl.handle.net/1721.1/61292.

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Thesis (M. Eng.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2009.<br>Cataloged from PDF version of thesis.<br>Includes bibliographical references (p. 79-80).<br>If synthetic biologists are to engineer novel biological functionality, they must be able to fabricate the DNA encoding it. A number of companies synthesize DNA for a fee, but their service is opaque. Researchers can alternatively perform their own syntheses, but the process is time-consuming and error-prone. This thesis introduces a software tool designed to make it simpler and more r

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Rocha, Kliger Kissinger Fernandes. "Um sistema computacional para diagnosticar viroses de plantas usando a t?cnica de PCR com constru??o de primers esp?cie-espec?ficos." Universidade Federal do Rio Grande do Norte, 2005. http://repositorio.ufrn.br:8080/jspui/handle/123456789/15442.

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Made available in DSpace on 2014-12-17T14:56:06Z (GMT). No. of bitstreams: 1 KligerKFR.pdf: 1442515 bytes, checksum: b8c82b51681c5740727addb5f0eed20a (MD5) Previous issue date: 2005-04-04<br>Coordena??o de Aperfei?oamento de Pessoal de N?vel Superior<br>It proposes a established computational solution in the development of a software to construct species-specific primers, used to improve the diagnosis of virus of plant for PCR. Primers are indispensable to PCR reaction, besides providing the specificity of the diagnosis. Primer is a synthetic, short, single stranded piece of DNA, used as a s

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Berg, Emily Katherine. "Thermodynamics of λ-PCR Primer Design and Effective Ribosome Binding Sites". Thesis, Virginia Tech, 2019. http://hdl.handle.net/10919/89900.

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Recombinant DNA technology has been commonly used in a number of fields to synthesize new products or generate products with a new pathway. Conventional cloning methods are expensive and require significant time and labor; λ-PCR, a new cloning method developed in the Senger lab, has a number of advantages compared to other cloning processes due to its employment of relatively inexpensive and widely available materials and time-efficiency. While the amount of lab work required for the cloning process is minimal, the importance of accurate primer design cannot be overstated. The target of this s

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Baldwin, D. Bruce. "Minisatellite PCR primer design for the determination of parentage in Misumenoides formosipes." Virtual Press, 1999. http://liblink.bsu.edu/uhtbin/catkey/1136715.

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To date, there is a scant amount of research on the long-term benefits of exercise training for individuals with moderate to severe chronic obstructive pulmonary disease. The purpose of this study was to evaluate standardized outcomes of a six-month maintenance pulmonary rehabilitation program to determine maintenance of functional capacity. Twenty-three subjects (sixteen men, seven women) diagnosed with clinical COPD ages 30-82 (65 + 12 years) participated in the retrospective study. The subjects were referred to an eight-week comprehensive pulmonary rehabilitation program after which upon tw

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Agrawal, Nitin. "Design and characterization of convective thermal cyclers for high-speed DNA analysis." [College Station, Tex. : Texas A&M University, 2006. http://hdl.handle.net/1969.1/ETD-TAMU-1060.

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Kumar, Sumeet Ph D. Massachusetts Institute of Technology. "Model microfluidic platform prototyping : design and fabrication of a Polymerase Chain Reaction (PCR) chip." Thesis, Massachusetts Institute of Technology, 2009. http://hdl.handle.net/1721.1/50572.

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Thesis (S.M.)--Massachusetts Institute of Technology, Dept. of Mechanical Engineering, 2009.<br>Includes bibliographical references (p. 96-99).<br>Polymerase Chain Reaction (PCR) is a molecular biology method for the in vitro amplification of nucleic acid molecules, which has wide applications in the areas of genetics, medicine and biochemistry. MEMS technology offers several advantages for the miniaturization of biological protocols like PCR, including decreased amplification time, reduced reagent consumption, disposability, target specific amplification, and functional integration. The typic

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Muradrasoli, Shaman. "Detection and Quantification of Variable Viral RNA by Real-Time PCR Assays." Doctoral thesis, Uppsala universitet, Klinisk virologi, 2008. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-9193.

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As the area of nucleic acid based technologies develops, so will our understanding of how structural variations in DNA and RNA pathogens are associated with disease. The overall goal of this thesis is the development of broadly targeted measurement techniques for variable viral RNA by Real-Time PCR (here referred to as quantitative reverse transcriptase PCR, QRT-PCR). In papers I & II, broadly targeted and specific QRT-PCRs were used to study expression of endogenous and exogenous betaretrovirus sequences in human tissues. Results from human tissues demonstrated endogenous betaretrovirus e

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Bolcen, Shanna June. "Molecular Evidence for Vector Implication of Onchocerca lupi in Los Angeles County, CA." Scholar Commons, 2014. https://scholarcommons.usf.edu/etd/4988.

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Onchocerca is a genus of roundworm most commonly associated with the human infection onchocerciasis, or river blindness. While typically a zoonotic infection of ungulate populations, canine cases (Onchocerca lupi) have been identified in the United States and Greece. In 2012, Los Angeles County, Veterinary Public Health Program identified 3 cases of Onchocerca spp. infections in domestic canines. Samples from the ensuing blackfly collections were sent to the Global Health Infectious Disease Research Unnasch Laboratory for parasite isolation and vector species identification. Species-specific p

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Fouratt, Melissa Amanda. "Application of Molecular Techniques to the Characterization of a Nitrifying Bioaugmentation Culture." Thesis, Virginia Tech, 2001. http://hdl.handle.net/10919/33171.

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Nitrification is the biological process whereby ammonia is converted first to nitrite by ammonia-oxidizing bacteria, and then the nitrite is subsequently converted to nitrate by nitrite-oxidizing bacteria. Ammonia and nitrite levels are closely monitored during treatment of wastewater due to their toxicity to other biological processes. Sybron Chemicals, Inc., is a company that manufactures a nitrifying bioaugmentation culture (1010N) that is used to enhance the naturally occurring levels of biological nitrification. The microbial population of the 1010N product has been examined using a c

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Books on the topic "PCR Design"

1

PCR primer design. Humana Press, 2015.

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Basu, Chhandak, ed. PCR Primer Design. Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2365-6.

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Yuryev, Anton, ed. PCR Primer Design. Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-528-2.

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K, McLeod J., ed. Practical junk rig: Design, aerodynamics and handling. Adlard Coles, 1988.

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Hasler, H. G. Practical junk rig: Design, aerodynamics and handling. Adlard Coles, 1996.

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Practical cellular and PCS design. McGraw-Hill, 1998.

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Janssen, Donald J. PCC mix design: Final report, Research Project GC8286, Task 1, PCC Mix Design. Washington State Dept. of Transportation, Planning, Research and Public Transportation Division, in cooperation with the U.S. Dept. of Transportation, Federal Highway Administration, 1989.

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8

George, Willse, ed. PCI hardware and software: Architecture and design. 3rd ed. Annabooks, 1996.

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George, Willse, ed. PCI hardware and software: Architecture and design. Annabooks, 1994.

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McFarland, Grant. Microprocessor design: A practical guide from design planning to manufacturing. McGraw-Hill, 2006.

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Book chapters on the topic "PCR Design"

1

Hyndman, David L., and Masato Mitsuhashi. "PCR Primer Design." In PCR Protocols. Humana Press, 2003. http://dx.doi.org/10.1007/978-1-4612-0055-0_19.

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Linhart, Chaim, and Ron Shamir. "Degenerate Primer Design." In PCR Primer Design. Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-528-2_11.

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Strerath, Michael, Ilka Detmer, Jens Gaster, and Andreas Marx. "Modified Oligonucleotides as Tools for Allele-Specific Amplification." In PCR Primer Design. Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-528-2_16.

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SantaLucia, John. "Physical Principles and Visual-OMP Software for Optimal PCR Design." In PCR Primer Design. Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-528-2_1.

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Andreson, Reidar, Lauris Kaplinski, and Maido Remm. "Fast Masking of Repeated Primer Binding Sites in Eukaryotic Genomes." In PCR Primer Design. Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-528-2_10.

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Fernandes, Rohan, and Steven Skiena. "MultiPrimer." In PCR Primer Design. Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-528-2_15.

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Zakour, Nouri Ben, and Yves Loir. "Designing Primers for Whole Genome PCR Scanning Using the Software Package GenoFrag." In PCR Primer Design. Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-528-2_18.

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Marshall, Owen. "Graphical Design of Primers with PerlPrimer." In PCR Primer Design. Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-528-2_21.

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Onodera, Kenji. "Selection for 3′-End Triplets for Polymerase Chain Reaction Primers." In PCR Primer Design. Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-528-2_3.

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Srivastava, Gyan Prakash, and Dong Xu. "Genome-Scale Probe and Primer Design with PRIMEGENS." In PCR Primer Design. Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-528-2_8.

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Conference papers on the topic "PCR Design"

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Cui, Zheng, Zhan Zhao, and Shanhong Xia. "Design and experiment of silicon PCR chips." In Symposium on Design, Test, Integration, and Packaging of MEMS/MOEMS 2002, edited by Bernard Courtois, Jean Michel Karam, Karen W. Markus, Bernd Michel, Tamal Mukherjee, and James A. Walker. SPIE, 2002. http://dx.doi.org/10.1117/12.462884.

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Ma, Yutong, Liang Zeng, and Jianhuan Zhang. "A fluorescence detection optical system for real-time quantitative PCR." In Optical Design and Testing X, edited by Rengmao Wu, Osamu Matoba, Yongtian Wang, and Tina E. Kidger. SPIE, 2020. http://dx.doi.org/10.1117/12.2574901.

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Pan, Ai-Xian, Weihua Zhao, and Min Zhang. "Temperature-Control Algorithm Design of the PCR Instrument." In 2008 4th International Conference on Wireless Communications, Networking and Mobile Computing (WiCOM). IEEE, 2008. http://dx.doi.org/10.1109/wicom.2008.1210.

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Chuang, Li-Yeh, Yu-Da Lin, Hsueh-Wei Chang, and Cheng-Hong Yang. "An Improved Natural PCR-RFLP Primer Design Method." In Bioengineering (BIBE). IEEE, 2011. http://dx.doi.org/10.1109/bibe.2011.21.

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Meng, Xiangkai, Guangyong Jin, Yuanhua Yu, Jian Li, and Xue Tao. "Design of integrated droplet digital PCR gene chip." In Global Intelligent Industry Conference 2020, edited by Liang Wang. SPIE, 2021. http://dx.doi.org/10.1117/12.2590032.

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Ashlock, Daniel, Kenneth Bryden, Steven Corns, Patrick Schnable, and Tsui-Jung Wen. "Training Finite State Classifiers to Improve PCR Primer Design." In 10th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conference. American Institute of Aeronautics and Astronautics, 2004. http://dx.doi.org/10.2514/6.2004-4385.

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Lin, Feng-Mao, Hsien-Da Huang, His-Yuan Huang, and Jorng-Tzong Horng. "Primer design for multiplex PCR using a genetic algorithm." In the 2005 conference. ACM Press, 2005. http://dx.doi.org/10.1145/1068009.1068087.

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Tan, Yin, Haiqing Gong, Naveen Ramalingam, et al. "A Miniaturized Fluorescence Imaging System for Detecting Disease Genes on a Micro PCR Biochip." In International Optical Design Conference. OSA, 2006. http://dx.doi.org/10.1364/iodc.2006.md6.

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Mohr, S., Y. H. Zhang, A. Macaskill, et al. "Optimal Design and Operation for a Droplet-Based PCR Chip." In ASME 4th International Conference on Nanochannels, Microchannels, and Minichannels. ASMEDC, 2006. http://dx.doi.org/10.1115/icnmm2006-96131.

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A two-temperature continuous-flow PCR polymer chip has been constructed that takes advantage of droplet technology to avoid sample contamination and adsorption at the surface. Samples contained in aqueous droplets are continuously moved by an oil carrier-fluid through various temperature zones, introducing the possibility of real-time quantitative PCR. The use of droplet technology also makes it possible to perform high throughput analyses of single cells allowing the study of populations of cells and facilitating a more comprehensive understanding of biological variance with relation to disea

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Liang, Hong-Long, Chungnan Lee, and Jain-Shing Wu. "Multiplex PCR primer design for gene family using genetic algorithm." In the 2005 conference. ACM Press, 2005. http://dx.doi.org/10.1145/1068009.1068019.

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Reports on the topic "PCR Design"

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Montiel Olea, César E., and Leonardo R. Corral. Text Analysis of Project Completion Reports. Inter-American Development Bank, 2021. http://dx.doi.org/10.18235/0003611.

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Project Completion Reports (PCRs) are the main instrument through which different multilateral organizations measure the success of a project once it closes. PCRs are important for development effectiveness as they serve to understand achievements, failures, and challenges within the project cycle they can feed back into the design and execution of new projects. The aim of this paper is to introduce text analysis tools for the exploration of PCR documents. We describe and apply different text analysis tools to explore the content of a sample of PCRs. We seek to illustrate a way in which PCRs c

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Álvarez, Carola, Leonardo Corral, José Martínez, and César Montiel. Project Completion Report Analysis: Implications for the Portfolio. Inter-American Development Bank, 2021. http://dx.doi.org/10.18235/0003145.

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This investigation builds on the Alvarez et al. (2021) Project Completion Report (PCR) analysis and its aim is to assess the implications of that study for the current portfolio of projects under execution at the Inter-American Development Bank (IDB). We use the sample of PCRs which reached operational closure (CO) in 2017 and 2018 to estimate the impact that design and execution performance characteristics of projects played in the likelihood of ending as successful and/or effective. Based on the estimated coefficients, we construct risk curves to isolate the effect specific characteristics h

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Álvarez, Carola, Leonardo Corral, Ana Cuesta, José Martínez, César Montiel, and Consuelo Yépez. Project Completion Report Analysis: Factors Behind Project Success and Effectiveness. Inter-American Development Bank, 2021. http://dx.doi.org/10.18235/0003116.

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The goal of development assistance is to deliver measurable results. At the Inter-American Development Bank (IDB), the Development Effectiveness Framework (DEF) was adopted to enhance the likelihood this goal is met. The key objective of this analysis is to enhance our understanding of the role the set of tools and processes adopted at the IDB, from project design to completion, play in the assessment of a projects success and effectiveness. Specifically, we are interested in teasing out the role different dimensions of project design, assessed through the Development Effectiveness Matrix (DEM

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Kolski, Jeffrey S. The PSR by Design, Model, and Measurement. Office of Scientific and Technical Information (OSTI), 2013. http://dx.doi.org/10.2172/1080339.

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Roberson, G. P., H. E. Martz, D. C. Camp, D. J. Decman, and E. M. Johansson. Preliminary A{ampersand}PCT multiple detector design. Office of Scientific and Technical Information (OSTI), 1997. http://dx.doi.org/10.2172/567997.

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T. Lotz. PWR ASSEMBLY SOURCE TERMS FOR WASTE PACKAGE DESIGN. Office of Scientific and Technical Information (OSTI), 1997. http://dx.doi.org/10.2172/891533.

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H. Wang. THERMAL EVALUATION OF PRELIMINARY 21 PWR AUCF DESIGN. Office of Scientific and Technical Information (OSTI), 1996. http://dx.doi.org/10.2172/891536.

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Keto, E., S. Azevedo, and P. Roberson. Preliminary 2D design study for A&PCT. Office of Scientific and Technical Information (OSTI), 1995. http://dx.doi.org/10.2172/108092.

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Lebak, J. M. Preliminary Design Review: PCA Integrated Radar-Tracker Application. Defense Technical Information Center, 2002. http://dx.doi.org/10.21236/ada419901.

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Fleming, Austin, David Hurley, Colby B. Jensen, Robert Schley, and Marat Khafizov. FY17 Report for the Design of a Benchtop PTR System. Office of Scientific and Technical Information (OSTI), 2017. http://dx.doi.org/10.2172/1473607.

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