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Journal articles on the topic 'Pepper Vein Banding Virus (PVBV)'

Author: Grafiati

Published: 4 June 2021

Last updated: 6 September 2023

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1

Ravi, K. S., J. Joseph, N. Nagaraju, S. Krishna Prasad, H. R. Reddy, and H. S. Savithri. "Characterization of a Pepper Vein Banding Virus from Chili Pepper in India." Plant Disease 81, no. 6 (June 1997): 673–76. http://dx.doi.org/10.1094/pdis.1997.81.6.673.

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A survey conducted in pepper-growing tracts of Karnataka State, covering 165 fields in 33 villages, revealed the occurrence of many pepper mosaic diseases. Based on reactions on selected test plants, the viruses were identified as pepper vein banding virus (PVBV), pepper veinal mottle virus, potato virus Y, cucumber mosaic virus, and tobacco mosaic virus. Among these, PVBV was the most prevalent. PVBV was purified from infected leaves of Capsicum annuum cv. California Wonder. Electron microscopy revealed flexuous rod-shaped particles in the purified preparations. The coat protein (CP) molecular weight was 35,000, which is similar to members of the Potyvirus group. As in other potyviruses, the CP underwent proteolytic degradation to a fragment with a molecular weight of 31,000. Both of these bands cross-reacted with antibodies against tobacco etch virus in Western blots. Polyclonal antibodies were produced against PVBV. Cross-reactivity studies with other potyviral antisera showed that PVBV is serologically closer to peanut mottle virus than to peanut stripe virus or sorghum potyvirus. N-terminal sequence analysis of the intact CP and trypsin-resistant core revealed that PVBV is a distinct member of the Potyvirus group.

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2

Sabharwal, Pallavi, and Handanahal S. Savithri. "Functional Characterization of Pepper Vein Banding Virus-Encoded Proteins and Their Interactions: Implications in Potyvirus Infection." Viruses 12, no. 9 (September 17, 2020): 1037. http://dx.doi.org/10.3390/v12091037.

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Pepper vein banding virus (PVBV) is a distinct species in the Potyvirus genus which infects economically important plants in several parts of India. Like other potyviruses, PVBV encodes multifunctional proteins, with several interaction partners, having implications at different stages of the potyviral infection. In this review, we summarize the functional characterization of different PVBV-encoded proteins with an emphasis on their interaction partners governing the multifunctionality of potyviral proteins. Intrinsically disordered domains/regions of these proteins play an important role in their interactions with other proteins. Deciphering the function of PVBV-encoded proteins and their interactions with cognitive partners will help in understanding the putative mechanisms by which the potyviral proteins are regulated at different stages of the viral life-cycle. This review also discusses PVBV virus-like particles (VLPs) and their potential applications in nanotechnology. Further, virus-like nanoparticle-cell interactions and intracellular fate of PVBV VLPs are also discussed.

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3

Anindya, R., J. Joseph, T. D. S. Gowri, and H. S. Savithri. "Complete genomic sequence of Pepper vein banding virus (PVBV): a distinct member of the genus Potyvirus." Archives of Virology 149, no. 3 (March 1, 2004): 625–32. http://dx.doi.org/10.1007/s00705-003-0236-0.

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4

C.Sushmitha, C. Sushmitha, and Sumangala Bhat K. "Pepper Vein Banding Virus-An Over view." International Journal of Scientific Research 3, no. 6 (June 1, 2012): 30–31. http://dx.doi.org/10.15373/22778179/june2014/12.

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5

Nyana, I. Dewa Nyoman, M. Tinny Lestariningsih, Ni Nengah Putri Adnyani, and Gede Suastika. "Identifikasi Pepper vein yellows virus yang Berasosiasi dengan Penyakit Yellow Vein Banding pada Tanaman Mentimun di Bali." Jurnal Fitopatologi Indonesia 12, no. 4 (November 21, 2016): 109. http://dx.doi.org/10.14692/jfi.12.4.109.

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Yellowing vein banding disease has been reported infecting cucurbit plants in Bali since 2014. Similar vein banding symptom on chilli pepper was observed previously, and early diagnosis indicated infection of Polerovirus. The objective of this research was to confirm the presence of Polerovirus infection on cucumber plant showing yellow vein banding symptom in Bali. Reverse transcription polymerase chain reaction – based detection method was conducted using specific primer pairs PeVYV-CP-F-BamH1/ PeVYV-CP-R-Pst1followed by sequencing and nucleotide sequence analysis. Specific DNA fragments of ± 650 bp was successfully amplified from field samples. Nucleotide sequence analysis showed that the sequence has the highest similarity > 95% with Pepper vein yellow virus (PeVYV) infecting chili pepper from Indonesia (Bali, and Rembang), Japan, and Greece.

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6

Wainaina, James M., Elijah Ateka, Timothy Makori, Monica A. Kehoe, and Laura M. Boykin. "A metagenomic study of DNA viruses from samples of local varieties of common bean in Kenya." PeerJ 7 (March 15, 2019): e6465. http://dx.doi.org/10.7717/peerj.6465.

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Common bean (Phaseolus vulgaris L.) is the primary source of protein and nutrients in the majority of households in sub-Saharan Africa. However, pests and viral diseases are key drivers in the reduction of bean production. To date, the majority of viruses reported in beans have been RNA viruses. In this study, we carried out a viral metagenomic analysis on virus symptomatic bean plants. Our virus detection pipeline identified three viral fragments of the double-stranded DNA virus Pelargonium vein banding virus (PVBV) (family, Caulimoviridae, genus Badnavirus). This is the first report of the dsDNA virus and specifically PVBV in legumes to our knowledge. In addition two previously reported +ssRNA viruses the bean common mosaic necrosis virus (BCMNVA) (Potyviridae) and aphid lethal paralysis virus (ALPV) (Dicistroviridae) were identified. Bayesian phylogenetic analysis of the Badnavirus (PVBV) using amino acid sequences of the RT/RNA-dependent DNA polymerase region showed the Kenyan sequence (SRF019_MK014483) was closely matched with two Badnavirus viruses: Dracaena mottle virus (DrMV) (YP_610965) and Lucky bamboo bacilliform virus (ABR01170). Phylogenetic analysis of BCMNVA was based on amino acid sequences of the Nib region. The BCMNVA phylogenetic tree resolved two clades identified as clade (I and II). Sequence from this study SRF35_MK014482, clustered within clade I with other Kenyan sequences. Conversely, Bayesian phylogenetic analysis of ALPV was based on nucleotide sequences of the hypothetical protein gene 1 and 2. Three main clades were resolved and identified as clades I–III. The Kenyan sequence from this study (SRF35_MK014481) clustered within clade II, and nested within a sub-clade; comprising of sequences from China and an earlier ALPV sequences from Kenya isolated from maize (MF458892). Our findings support the use of viral metagenomics to reveal the nascent viruses, their viral diversity and evolutionary history of these viruses. The detection of ALPV and PVBV indicate that these viruses have likely been underreported due to the unavailability of diagnostic tools.

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7

SIRIWONG, P., K. KITTIPAKORN, and M. IKEGAMI. "Characterization of chilli vein-banding mottle virus isolated from pepper in Thailand." Plant Pathology 44, no. 4 (August 1995): 718–27. http://dx.doi.org/10.1111/j.1365-3059.1995.tb01696.x.

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8

Sabharwal, Pallavi, C. Sushmitha, C. K. Amritha, Usha Natraj, Mathur R. N. Murthy, and Handanahal S. Savithri. "Development of pepper vein banding virus chimeric virus-like particles for potential diagnostic and therapeutic applications." Archives of Virology 165, no. 5 (March 30, 2020): 1163–76. http://dx.doi.org/10.1007/s00705-020-04581-y.

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9

Sabharwal, Pallavi, Chemmenchery K. Amritha, Cheekati Sushmitha, Usha Natraj, and Handanahal S. Savithri. "Intracellular trafficking and endocytic uptake pathway of Pepper vein banding virus-like particles in epithelial cells." Nanomedicine 14, no. 10 (May 2019): 1247–65. http://dx.doi.org/10.2217/nnm-2018-0405.

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10

Anindya, Roy, Sagar Chittori, and H. S. Savithri. "Tyrosine 66 of Pepper vein banding virus genome-linked protein is uridylylated by RNA-dependent RNA polymerase." Virology 336, no. 2 (June 2005): 154–62. http://dx.doi.org/10.1016/j.virol.2005.03.024.

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11

Anindya, R., and H. S. Savithri. "Surface-exposed amino- and carboxy-terminal residues are crucial for the initiation of assembly in Pepper vein banding virus: a flexuous rod-shaped virus." Virology 316, no. 2 (November 2003): 325–36. http://dx.doi.org/10.1016/s0042-6822(03)00593-2.

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12

Joseph, J., and H. S. Savithri. "Determination of 3′-terminal nucleotide sequence of pepper\break vein banding virus RNA and expression of its coat protein in Escherichia coli." Archives of Virology 144, no. 9 (September 1999): 1679–87. http://dx.doi.org/10.1007/s007050050696.

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13

Septariani, Dwiwiyati Nurul, Sri Hendrastuti Hidayat, and Endang Nurhayati. "IDENTIFIKASI PENYEBAB PENYAKIT DAUN KERITING KUNING PADA TANAMAN MENTIMUN." Jurnal Hama dan Penyakit Tumbuhan Tropika 14, no. 1 (January 22, 2014): 80–86. http://dx.doi.org/10.23960/j.hptt.11480-86.

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ABSTRACTIdentification of the causal agent of yellow leaf curl disease on cucumbers. Yellow leaf curl disease has been reported to cause serious diseases and yield losses on tobacco, chilli pepper, and tomato plants in Java. Similar symptoms were observed recently on cucumber plants from several growing areas in West Java (Bogor), Central Java (Tegal and Sukoharjo), and Yogyakarta (Sleman). Symptom variations including mosaic, chlorotic spotting, leaf curling, blistering, vein banding, reduction and distortion of leaf and fruit were observed. Serological detection using Enzyme Linked Immunosorbent Assay (ELISA) showed infection of several viruses. Antibodies specific to Squash mosaic comovirus (SqMV), Zucchini yellow mosaic potyvirus (ZyMV), dan Cucumber mosaic cucumovirus (CMV) were reacted positively with field samples. No serological reactions were observed with antibodies to Tobacco ringspot potyvirus (TRSV) and Watermelon mosaic potyvirus (WMV). Molecular detection approach based on Polymerase Chain Reaction was undergone using universal primers for Geminivirus, pAL1v1978 and pAR1c715. DNA fragment 1600 bp in size, was successfully amplified from leaf samples originated from Tegal, Sleman, Bogor, and Sukoharjo. Further identification by nucleotide sequencing indicated that virus isolates causing yellow leaf curl disease on cucumber have highest homology (95.7% to 98.6%) with Tomato leaf curl New Delhi virus-[Cucumber:Indonesia] (AB613825) from Klaten, Central Java, Indonesia.

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14

Chandel, V., V. Hallan, and A. A. Zaidi. "Natural Occurrence of a Potyvirus on Murraya koenigii in India." Plant Disease 89, no. 8 (August 2005): 909. http://dx.doi.org/10.1094/pd-89-0909a.

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Murraya koenigii (L.) Spreng., a small, strong-smelling umbrageous tree with subcampanulate white flowers belonging to the family Rutaceae, is native to India and southeastern Asia (2). It is distributed across the Indian subcontinent excluding the higher elevations of the Himalayas. In India, the leaves are mainly used for culinary purposes. The leaves are commonly known as curry leaves or ‘sweet neem’. The whole plant including bark, root, leaves, fruits, and fruit pulp is used medicinally. This plant was reported to be a host of Citrus tristeza virus (1). In a survey of potyvirus incidence in the northwestern Himalaya foothills of the Kangra and Hamirpur districts in the state of Himachal Pradesh in 2004, M. koenigii plants showing mosaic symptoms on leaves, typical of a virus infection, were frequently observed. Symptomatic leaves were tested for the presence of several viruses using enzyme-linked immunosorbent assay with specific antibodies. Positive results were obtained with potyvirus group specific antibodies (Agdia, Elkhardt, IN) in triplicate analyses of 5 of 15 leaf samples tested. To further identify the infecting virus, RNA from plants was tested using universal potyvirus primer pair P9502 and CPUP (3) and reverse transcription-polymerase chain reaction to amplify a genome fragment encoding portions of the coat protein and the 3′UTR (3). An amplification product of the expected size (~800 bp) was obtained. The product was cloned into the pGem-T easy vector (Promega, Madison, WI), and three clones were sequenced. The sequence (GenBank Accession No. AJ852504) had 92% identity to Chili vein banding mottle virus, a potyvirus infecting pepper reported from Thailand (GenBank Accession No. U72193). To our knowledge, this is the first report of a potyvirus naturally occurring on a Murraya sp. References: (1) K. Balaram and K. Ramakrishnan. Curr. Sci. 48:453, 1979. (2) J. D. Hooker. Flora British India 1:502, 1875. (3) R. A. A. van der Vlugt et al. Phytopathology. 89:148, 1999.

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15

Trkulja, V., D. Kovačić, B. Ćurković, A. Vučurović, I. Stanković, A. Bulajić, and B. Krstić. "First Report of Cucumber mosaic virus on Melon in Bosnia and Herzegovina." Plant Disease 97, no. 8 (August 2013): 1124. http://dx.doi.org/10.1094/pdis-02-13-0135-pdn.

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During July 2012, field-grown melon plants (Cucumis melo L.) with symptoms of mosaic, chlorotic mottling, and vein banding as well as blistering and leaf malformation were observed in one field in the locality of Kladari (municipality of Doboj, Bosnia and Herzegovina). Disease incidence was estimated at 60%. A total of 20 symptomatic plants were collected and tested with double-antibody sandwich (DAS)-ELISA using commercial polyclonal antisera (Bioreba AG, Reinach, Switzerland) against four the most commonly reported melon viruses: Cucumber mosaic virus (CMV), Watermelon mosaic virus (WMV), Zucchini yellow mosaic virus (ZYMV), and Papaya ringspot virus (PRSV) (1,3). Commercial positive and negative controls were included in each assay. Only CMV was detected serologically in all screened melon samples. Sap from an ELISA-positive sample (162-12) was mechanically inoculated to test plants using 0.01 M phosphate buffer (pH 7.0). The virus caused necrotic local lesions on Chenopodium amaranticolor 5 days after inoculation, while mild to severe mosaic was observed on Nicotiana rustica, N. glutinosa, N. tabacum ‘Samsun,’ Cucurbita pepo ‘Ezra F1,’ and Cucumis melo ‘Ananas’ 10 to 14 days post-inoculation. All five inoculated plants of each experimental host were DAS-ELISA positive for CMV. The presence of CMV in all naturally and mechanically infected plants was further verified by conventional reverse transcription (RT)-PCR. Total RNAs were extracted with the RNeasy Plant Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions and used as template in RT-PCR. RT-PCR was carried out with the One-Step RT-PCR Kit (Qiagen) using primer pair CMVCPfwd and CMVCPrev (4), amplifying the entire coat protein (CP) gene and part of 3′- and 5′-UTRs of CMV RNA 3. Total RNAs obtained from the Serbian CMV isolate from Cucurbita pepo ‘Olinka’ (GenBank Accession No. HM065510) and healthy melon leaves were used as positive and negative controls, respectively. An amplicon of the correct predicted size (871 bp) was obtained from all naturally and mechanically infected plants as well as from positive control, but not from healthy tissues. The amplified product derived from isolate 162-12 was purified with QIAquick PCR Purification Kit (Qiagen) and sequenced directly using the same primer pair as in RT-PCR (KC559757). Multiple sequence alignment of the 162-12 isolate CP sequence with those available in GenBank, conducted with MEGA5 software, revealed that melon isolate from Bosnia and Herzegovina showed the highest nucleotide identity of 99.7% (100% amino acid identity) with eight CMV isolates originating from various hosts from Serbia (GQ340670), Spain (AJ829770 and 76, AM183119), the United States (U20668, D10538), Australia (U22821), and France (X16386). Despite the fact that CMV is well established in majority of Mediterranean countries and represents an important threat for many agriculture crops, including pepper in Bosnia and Herzegovina (2), to our knowledge, this is the first report of CMV infecting melon in Bosnia and Herzegovina. Melon popularity as well as production value has been rising rapidly and the presence of CMV may have a drastic economic impact on production of this crop in Bosnia and Herzegovina. References: (1) E. E. Grafton-Cardwell et al. Plant Dis. 80:1092, 1996. (2) M. Jacquemond. Adv. Virus Res. 84:439, 2012. (3) M. Luis-Arteaga et al. Plant Dis. 82:979, 1998. (4) K. Milojević et al. Plant Dis. 96:1706, 2012.

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16

"Pepper vein banding virus." CABI Compendium CABI Compendium (January 7, 2022). http://dx.doi.org/10.1079/cabicompendium.43830.

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17

Paslay, Caleb, and Akhtar Ali. "First report of Potato Yellow Dwarf Nucleorhabdovirus infecting pepper (Capsicum spp.) in Oklahoma." Plant Disease, April 20, 2023. http://dx.doi.org/10.1094/pdis-01-23-0147-pdn.

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Pepper (Capsicum spp.) is an economically valuable crop used for spice and fresh vegetable (Tripodi, and Kumar. 2019). The total acreage of peppers in Oklahoma is low (NASS, 2020), but there are numerous farms that are growing peppers for commercial production and provide fresh produce to local farmer’s markets and processing industries. During a field survey in 2021, pepper plants with leaf distortion, mottling of the leaf, apical yellowing, and vein banding were observed in commercial pepper fields (Supplementary Figure 1). Seventeen leaf samples were collected from symptomatic pepper plants in Caddo County of Oklahoma. Total RNA was extracted from each sample using the Spectrum Plant total RNA kit, and screened by RT-PCR for Pepper mild mottle virus (PMMoV) as described previously (Ali and Ali, 2015). Total RNA from two negative PCR samples (named Caddo57 and Caddo64 respectively) were analyzed by high throughput sequencing. A total read count of 45,780,855 (average length = 73.51bp) and 21,163,567 (average length = 73.86 bp) for Caddo57 and Caddo64 respectively, were assembled in de novo using CLC genomic workbench (QIAGEN) and used for BLASTn and BLASTx analysis. Three contigs: 4,259bp (average coverage 31776.33X), 4,378 (average coverage 21773.09X), and 4,206bp (average coverage 57419.46X) for Caddo57 isolate showed 90-92% nucleotide (nt) identities with partial sequences of several genes (M, G, L, P, N, X, and Y genes) of PYDV isolate (KY549567). Similarly, four contigs: 4,204bp (average coverage 57446.92X), 2,738bp (average coverage 16192X), 4,257bp (average coverage 31791X), and 1,510bp (average coverage 33051.35X) were obtained for Caddo64 isolate and showed 90-92% nt identities with the same genes of PYDV isolate (KY549567). To further confirm the presence of PYDV, total RNA from Caddo57 and Caddo64 samples were tested by RT-PCR assays using newly designed primers (Table 1) based on the contigs sequences obtained above. The expected PCR products from both isolates were directly sequenced. Using BLASTn, nucleotide sequences of both L gene (OP805375), and N gene (OP805377) for Caddo57 isolate showed 92.82% and 92.392% identities respectively with PYDV isolate (KY549567). Similarly, nucleotide sequences of L gene (OP805376) and N gene (OP805378) of Caddo64 isolate showed 92.27% and 92.08% identities respectively with PYDV isolate (KY549567). The species demarcation criteria for nucelorhabdoviruses is 50% in cognate genes (Walker et al. 2018). These results demonstrate that our isolates align with PYDV species, and do not constitute evidence for a divergent nucleorhabdovirus member. The remaining 15 samples were negative by RT-PCR assay to PYDV. Our results confirmed the presence of PYDV infecting pepper in Oklahoma. Currently, PYDV has been reported infecting potato, tobacco, marigold, pepper, tomato, and white clover. The geographical distribution of PYDV appears to be limited to the US with detection in Wisconsin, Minnesota, California, New York, and Maryland (Walker et al. 1939, Lockhart, 1989, Falk et al. 1981, Chiu et al. 1970, Hammond et al. 2017). The PYDV is naturally transmitted by aphids and leafhoppers (Ghosh et al. 2008). The recognition of PYDV in Oklahoma is of notable concern for local growers. Further studies are needed to expand upon the relationship of these PYDV isolates to the currently reported isolates in the USA. This is the first report of potato yellow dwarf nucleorhabdovirus (PYDV) infecting pepper in Oklahoma.

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