Academic literature on the topic 'Periplasmic Protein Expression'

Create a spot-on reference in APA, MLA, Chicago, Harvard, and other styles

Select a source type:

Consult the lists of relevant articles, books, theses, conference reports, and other scholarly sources on the topic 'Periplasmic Protein Expression.'

Next to every source in the list of references, there is an 'Add to bibliography' button. Press on it, and we will generate automatically the bibliographic reference to the chosen work in the citation style you need: APA, MLA, Harvard, Chicago, Vancouver, etc.

You can also download the full text of the academic publication as pdf and read online its abstract whenever available in the metadata.

Journal articles on the topic "Periplasmic Protein Expression"

1

Wu, Si, Roslyn N. Brown, Samuel H. Payne, Da Meng, Rui Zhao, Nikola Tolić, Li Cao, et al. "Top-Down Characterization of the Post-Translationally Modified Intact Periplasmic Proteome from the Bacterium Novosphingobium aromaticivorans." International Journal of Proteomics 2013 (March 10, 2013): 1–10. http://dx.doi.org/10.1155/2013/279590.

Full text
Abstract:
The periplasm of Gram-negative bacteria is a dynamic and physiologically important subcellular compartment where the constant exposure to potential environmental insults amplifies the need for proper protein folding and modifications. Top-down proteomics analysis of the periplasmic fraction at the intact protein level provides unrestricted characterization and annotation of the periplasmic proteome, including the post-translational modifications (PTMs) on these proteins. Here, we used single-dimension ultra-high pressure liquid chromatography coupled with the Fourier transform mass spectrometry (FTMS) to investigate the intact periplasmic proteome of Novosphingobium aromaticivorans. Our top-down analysis provided the confident identification of 55 proteins in the periplasm and characterized their PTMs including signal peptide removal, N-terminal methionine excision, acetylation, glutathionylation, pyroglutamate, and disulfide bond formation. This study provides the first experimental evidence for the expression and periplasmic localization of many hypothetical and uncharacterized proteins and the first unrestrictive, large-scale data on PTMs in the bacterial periplasm.
APA, Harvard, Vancouver, ISO, and other styles
2

Kurokawa, Yoichi, Hideki Yanagi, and Takashi Yura. "Overexpression of Protein Disulfide Isomerase DsbC Stabilizes Multiple-Disulfide-Bonded Recombinant Protein Produced and Transported to the Periplasm in Escherichia coli." Applied and Environmental Microbiology 66, no. 9 (September 1, 2000): 3960–65. http://dx.doi.org/10.1128/aem.66.9.3960-3965.2000.

Full text
Abstract:
ABSTRACT Dsb proteins (DsbA, DsbB, DsbC, and DsbD) catalyze formation and isomerization of protein disulfide bonds in the periplasm ofEscherichia coli. By using a set of Dsb coexpression plasmids constructed recently, we analyzed the effects of Dsb overexpression on production of horseradish peroxidase (HRP) isozyme C that contains complex disulfide bonds and tends to aggregate when produced in E. coli. When transported to the periplasm, HRP was unstable but was markedly stabilized upon simultaneous overexpression of the set of Dsb proteins (DsbABCD). Whereas total HRP production increased severalfold upon overexpression of at least disulfide-bonded isomerase DsbC, maximum transport of HRP to the periplasm seemed to require overexpression of all DsbABCD proteins, suggesting that excess Dsb proteins exert synergistic effects in assisting folding and transport of HRP. Periplasmic production of HRP also increased when calcium, thought to play an essential role in folding of nascent HRP polypeptide, was added to the medium with or without Dsb overexpression. These results suggest that Dsb proteins and calcium play distinct roles in periplasmic production of HRP, presumably through facilitating correct folding. The present Dsb expression plasmids should be useful in assessing and dissecting periplasmic production of proteins that contain multiple disulfide bonds in E. coli.
APA, Harvard, Vancouver, ISO, and other styles
3

Rambow-Larsen, Amy A., and Alison A. Weiss. "Temporal Expression of Pertussis Toxin and Ptl Secretion Proteins by Bordetella pertussis." Journal of Bacteriology 186, no. 1 (January 1, 2004): 43–50. http://dx.doi.org/10.1128/jb.186.1.43-50.2004.

Full text
Abstract:
ABSTRACT Pertussis toxin is an AB5 toxin comprised of protein subunits S1 through S5. The individual subunits are secreted by a Sec-dependent mechanism into the periplasm, where the toxin is assembled. The Ptl type IV secretion system mediates secretion of assembled toxin past the outer membrane. In this study, we examined the time course of protein expression, toxin assembly, and secretion as a function of the bacterial growth cycle. Logarithmic growth was observed after a 1-h lag phase. Secreted toxin was first observed at 3 h. Secretion continued throughout the logarithmic growth phase and decreased as the culture entered the stationary phase after about 24 h. On a per cell basis, toxin secretion occurred at a constant rate of 3 molecules/min/cell from 2 to 18 h. More of toxin subunits S1, S2, and S3 were produced than were secreted, resulting in periplasmic accumulation. Periplasmic S1, S2, and S3 were found to be soluble in the periplasm, as well as membrane associated. About one-half of the periplasmic S1, S2 and S3 subunits were incorporated into holotoxin. Secretion component PtlF was present at a low level at time zero, and the level increased between 2 and 24 h from 30 to 1,000 molecules per cell; however, the initial level of PtlF, 30 molecules per cell, supported maximal secretion. The accumulation of both periplasmic toxin and secretion components suggests that translation rates exceed the rate of secretion and that secretion, not toxin and Ptl complex assembly, is rate limiting.
APA, Harvard, Vancouver, ISO, and other styles
4

Felício, Ana P., Eliandre de Oliveira, M. A. Odena, Oswaldo Garcia Jr., Maria C. Bertolini, Lúcio F. C. Ferraz, Laura M. M. Ottoboni, and Maria T. M. Novo. "A Preliminary Differential Proteomic Analysis of the Periplasmic Fraction in Acidithiobacillus Ferrooxidans Planktonic and Attached Cells Exposed to Chalcopyrite." Advanced Materials Research 71-73 (May 2009): 179–82. http://dx.doi.org/10.4028/www.scientific.net/amr.71-73.179.

Full text
Abstract:
The Acidithiobacillus ferrooxidans periplasmic space is known to have proteins involved in the respiratory chains. There are no reports about the expression of the periplasmic proteins in A. ferrooxidans cells attached to chalcopyrite. In this preliminary work, it was compared the periplasmic protein profiles of A. ferrooxidans planktonic and attached cells after exposure to chalcopyrite for 2 hours. The bacterial response to chalcopyrite was investigated by a proteomic approach (two- dimensional gel electrophoresis and mass spectrometry). Four proteins differentially expressed between planktonic and attached cells after exposure to chalcopyrite were identified. Two of these proteins, repressed in chalcopyrite- attached cells, were both identified as superoxide dismutase, whereas the single strand binding protein (SSB) and the PspA/IM30 protein were induced. These results showed that A. ferrooxidans chalcopyrite- attached and planktonic cells show differential expression of the periplasmic proteins and that a proteomic approach can provide a valuable tool to detect proteins related to the A. ferrooxidans response to attachment to the mineral substrates.
APA, Harvard, Vancouver, ISO, and other styles
5

CastilloKeller, Maria, and Rajeev Misra. "Protease-Deficient DegP Suppresses Lethal Effects of a Mutant OmpC Protein by Its Capture." Journal of Bacteriology 185, no. 1 (January 1, 2003): 148–54. http://dx.doi.org/10.1128/jb.185.1.148-154.2003.

Full text
Abstract:
ABSTRACT The expression of assembly-defective outer membrane proteins can confer lethality if they are not degraded by envelope proteases. We report here that the expression of a mutant OmpC protein, OmpC2Cys, which forms disulfide bonds in the periplasm due to the presence of two non-native cysteine residues, is lethal in cells lacking the major periplasmic protease, DegP. This lethality is not observed in dsbA strains that have diminished ability to form periplasmic disulfide bonds. Our data show that this OmpC2Cys-mediated lethality in a degP::Kmr dsbA + background can be reversed by a DegP variant, DegPS210A, that is devoid of its proteolytic activity but retains its reported chaperone activity. However, DegPS210A does not reverse the lethal effect of OmpC2Cys by correcting its assembly but rather by capturing misfolded mutant OmpC polypeptides and thus removing them from the assembly pathway. Displacement of OmpC2Cys by DegPS210A also alleviates the negative effect that the mutant OmpC protein has on wild-type OmpF.
APA, Harvard, Vancouver, ISO, and other styles
6

Zhou, Xiaofeng, Xiufang Hu, Jinyun Li, and Nian Wang. "A Novel Periplasmic Protein, VrpA, Contributes to Efficient Protein Secretion by the Type III Secretion System in Xanthomonas spp." Molecular Plant-Microbe Interactions® 28, no. 2 (February 2015): 143–53. http://dx.doi.org/10.1094/mpmi-10-14-0309-r.

Full text
Abstract:
Efficient secretion of type III effector proteins from the bacterial cytoplasm to host cell cytosol via a type III secretion system (T3SS) is crucial for virulence of plant-pathogenic bacterium. Our previous study revealed a conserved hypothetical protein, virulence-related periplasm protein A (VrpA), which was identified as a critical virulence factor for Xanthomonas citri subsp. citri. In this study, we demonstrate that mutation of vrpA compromises X. citri subsp. citri virulence and hypersensitive response induction. This deficiency is also observed in the X. campestris pv. campestris strain, suggesting a functional conservation of VrpA in Xanthomonas spp. Our study indicates that VrpA is required for efficient protein secretion via T3SS, which is supported by multiple lines of evidence. A CyaA reporter assay shows that VrpA is involved in type III effector secretion; quantitative reverse-transcription polymerase chain reaction analysis suggests that the vrpA mutant fails to activate citrus-canker-susceptible gene CsLOB1, which is transcriptionally activated by transcription activator-like effector PthA4; in vitro secretion study reveals that VrpA plays an important role in secretion of T3SS pilus, translocon, and effector proteins. Our data also indicate that VrpA in X. citri subsp. citri localizes to bacterial periplasmic space and the periplasmic localization is required for full function of VrpA and X. citri subsp. citri virulence. Protein–protein interaction studies show that VrpA physically interacts with periplasmic T3SS components HrcJ and HrcC. However, the mutation of VrpA does not affect T3SS gene expression. Additionally, VrpA is involved in X. citri subsp. citri tolerance of oxidative stress. Our data contribute to the mechanical understanding of an important periplasmic protein VrpA in Xanthomonas spp.
APA, Harvard, Vancouver, ISO, and other styles
7

van der Wal, Fimme J., G. Koningstein, C. M. ten Hagen, Bauke Oudega, and Joen Luirink. "Optimization of Bacteriocin Release Protein (BRP)-Mediated Protein Release by Escherichia coli: Random Mutagenesis of the pCloDF13-Derived BRP Gene To Uncouple Lethality and Quasi-Lysis from Protein Release." Applied and Environmental Microbiology 64, no. 2 (February 1, 1998): 392–98. http://dx.doi.org/10.1128/aem.64.2.392-398.1998.

Full text
Abstract:
ABSTRACT Bacteriocin release proteins (BRPs) can be used for the release of heterologous proteins from the Escherichia coli periplasm into the culture medium. However, high-level expression of BRP causes apparent lysis of the host cells in liquid cultures (quasi-lysis) and inhibition of growth on broth agar plates (lethality). To optimize BRP-mediated protein release, the pCloDF13 BRP gene was subjected to random mutagenesis by using PCR techniques. Mutated BRPs with a strongly reduced capacity to cause growth inhibition on broth agar plates were selected, analyzed by nucleotide sequencing, and further characterized by performing growth and release experiments in liquid cultures. A subset of these BRP derivatives did not cause quasi-lysis and had only a small effect on growth but still functioned in the release of the periplasmic protein β-lactamase and the periplasmic K88 molecular chaperone FaeE and in the release of the bacteriocin cloacin DF13 into the culture medium. These BRP derivatives can be more efficiently used for extracellular production of proteins by E. coli than can the original BRP.
APA, Harvard, Vancouver, ISO, and other styles
8

Bernhard, Michael, Bärbel Friedrich, and Roman A. Siddiqui. "Ralstonia eutropha TF93 Is Blocked in Tat-Mediated Protein Export." Journal of Bacteriology 182, no. 3 (February 1, 2000): 581–88. http://dx.doi.org/10.1128/jb.182.3.581-588.2000.

Full text
Abstract:
ABSTRACT Ralstonia eutropha (formerly Alcaligenes eutrophus) TF93 is pleiotropically affected in the translocation of redox enzymes synthesized with an N-terminal signal peptide bearing a twin arginine (S/T-R-R-X-F-L-K) motif. Immunoblot analyses showed that the catalytic subunits of the membrane-bound [NiFe] hydrogenase (MBH) and the molybdenum cofactor-binding periplasmic nitrate reductase (Nap) are mislocalized to the cytoplasm and to the inner membrane, respectively. Moreover, physiological studies showed that the copper-containing nitrous oxide reductase (NosZ) was also not translocated to the periplasm in strain TF93. The cellular localization of enzymes exported by the general secretion system was unaffected. The translocation-arrested MBH and Nap proteins were enzymatically active, suggesting that twin-arginine signal peptide-dependent redox enzymes may have their cofactors inserted prior to transmembrane export. The periplasmic destination of MBH, Nap, and NosZ was restored by heterologous expression of Azotobacter chroococcum tatAmobilized into TF93. tatA encodes a bacterial Hcf106-like protein, a component of a novel protein transport system that has been characterized in thylakoids and shown to translocate folded proteins across the membrane.
APA, Harvard, Vancouver, ISO, and other styles
9

Brandon, Lauren D., and Marcia B. Goldberg. "Periplasmic Transit and Disulfide Bond Formation of the Autotransported Shigella Protein IcsA." Journal of Bacteriology 183, no. 3 (February 1, 2001): 951–58. http://dx.doi.org/10.1128/jb.183.3.951-958.2001.

Full text
Abstract:
ABSTRACT The Shigella outer membrane protein IcsA belongs to the family of type V secreted (autotransported) virulence factors. Members of this family mediate their own translocation across the bacterial outer membrane: the carboxy-terminal β domain forms a β barrel channel in the outer membrane through which the amino-terminal α domain passes. IcsA, which is localized at one pole of the bacterium, mediates actin assembly by Shigella, which is essential for bacterial intracellular movement and intercellular dissemination. Here, we characterize the transit of IcsA across the periplasm during its secretion. We show that an insertion in the dsbB gene, whose gene product mediates disulfide bond formation of many periplasmic intermediates, does not affect the surface expression or unipolar targeting of IcsA. However, IcsA forms one disulfide bond in the periplasm in a DsbA/DsbB-dependent fashion. Furthermore, cellular fractionation studies reveal that IcsA has a transient soluble periplasmic intermediate. Our data also suggest that IcsA is folded in a proteinase K-resistant state in the periplasm. From these data, we propose a novel model for the secretion of IcsA that may be applicable to other autotransported proteins.
APA, Harvard, Vancouver, ISO, and other styles
10

Sroga, Grazyna E., and Jonathan S. Dordick. "Generation of a broad esterolytic subtilisin using combined molecular evolution and periplasmic expression." Protein Engineering, Design and Selection 14, no. 11 (November 2001): 929–37. http://dx.doi.org/10.1093/protein/14.11.929.

Full text
APA, Harvard, Vancouver, ISO, and other styles
More sources

Dissertations / Theses on the topic "Periplasmic Protein Expression"

1

Deb, Arpan, William A. Johnson, Alexander P. Kline, Boston J. Scott, Lydia R. Meador, Dustin Srinivas, Jose M. Martin-Garcia, et al. "Bacterial expression, correct membrane targeting and functional folding of the HIV-1 membrane protein Vpu using a periplasmic signal peptide." PUBLIC LIBRARY SCIENCE, 2017. http://hdl.handle.net/10150/623017.

Full text
Abstract:
Viral protein U (Vpu) is a type-III integral membrane protein encoded by Human Immunodeficiency Virus-1 (HIV-1). It is expressed in infected host cells and plays several roles in viral progeny escape from infected cells, including down-regulation of CD4 receptors. But key structure/ function questions remain regarding the mechanisms by which the Vpu protein contributes to HIV-1 pathogenesis. Here we describe expression of Vpu in bacteria, its purification and characterization. We report the successful expression of PelB-Vpu in Escherichia coli using the leader peptide pectate lyase B (PelB) from Erwinia carotovora. The protein was detergent extractable and could be isolated in a very pure form. We demonstrate that the PelB signal peptide successfully targets Vpu to the cell membranes and inserts it as a type I membrane protein. PelB-Vpu was biophysically characterized by circular dichroism and dynamic light scattering experiments and was shown to be an excellent candidate for elucidating structural models.
APA, Harvard, Vancouver, ISO, and other styles
2

Bäcklund, Emma. "Impact of glucose uptake rate on recombinant protein production in Escherichia coli." Doctoral thesis, KTH, Bioprocessteknik, 2011. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-34019.

Full text
Abstract:
Escherichia coli (E. coli) is an attractive host for production of recombinant proteins, since it generally provides a rapid and economical means to achieve high product quantities. In this thesis, the impact of the glucose uptake rate on the production of recombinant proteins was studied, aiming at improving and optimising production of recombinant proteins in E. coli. E. coli can be cultivated to high cell densities in bioreactors by applying the fed-batch technique, which offers a means to control the glucose uptake rate. One objective of this study was to find a method for control of the glucose uptake rate in small-scale cultivation, such as microtitre plates and shake flasks. Strains with mutations in the phosphotransferase system (PTS) where used for this purpose. The mutants had lower uptake rates of glucose, resulting in lower growth rates and lower accumulation of acetic acid in comparison to the wild type. By using the mutants in batch cultivations, the formation of acetic acid to levels detrimental to cell growth could be avoided, and ten times higher cell density was reached. Thus, the use of the mutant strains represent a novel, simple alternative to fed-batch cultures.   The PTS mutants were applied for production of integral membrane proteins in order to investigate if the reduced glucose uptake rate of the mutants was beneficial for their production. The mutants were able to produce three out of five integral membrane proteins that were not possible to produce by the wild-type strain. The expression level of one selected membrane protein was increased when using the mutants and the expression level appeared to be a function of strain, glucose uptake rate and acetic acid accumulation. For production purposes, it is not uncommon that the recombinant proteins are secreted to the E. coli periplasm. However, one drawback with secretion is the undesired leakage of periplasmic products to the medium. The leakage of the product to the medium was studied as a function of the feed rate of glucose in fed-batch cultivations and they were found to correlate. It was also shown that the amount of outer membrane proteins was affected by the feed rate of glucose and by secretion of a recombinant product to the periplasm. The cell surface is another compartment where recombinant proteins can be expressed. Surface display of proteins is a potentially attractive production strategy since it offers a simple purification scheme and possibilities for on-cell protein characterisation, and may in some cases also be the only viable option. The AIDA-autotransporter was applied for surface display of the Z domain of staphylococcal protein A under control of the aidA promoter. Z was expressed in an active form and was accessible to the medium. Expression was favoured by growth in minimal medium and it seemed likely that expression was higher at higher feed rates of glucose during fed-batch cultivation. A repetitive batch process was developed, where relatively high cell densities were achieved whilst maintaining a high expression level of Z.
QC 20110608
APA, Harvard, Vancouver, ISO, and other styles
3

Jain, Jayati. "Engineering antibodies to study and improve immunomagnetic isolation of tumour cells." Thesis, University of Oxford, 2013. http://ora.ox.ac.uk/objects/uuid:81355801-b331-4705-bfef-204a29ee0347.

Full text
Abstract:
Cell separation based on antibody-targeted magnetic beads has been widely used in a number of applications in immunology, microbiology, oncology and more recently, in the isolation of circulating tumour cells (CTCs) in cancer patients. Although other cell separation techniques such as size based cell filtration and Fluorescence Activated Cell Sorting have also been in popular use, immunomagnetic cell isolation possesses the advantages of high throughput, good specificity and reduced cell stress. However, certain fundamental features of the cell-bead interface are still unknown. In this study, some of the key features of the cell-bead synapse were investigated in an effort to improve the efficiency of immunomagnetic cell isolation and reduce its dependence on high expressing cell surface markers. A clinically relevant antibody fragment (Fab) against tyrosine kinase receptor HER2 was applied to study the immunomagnetic isolation of HER2 expressing cancer cells. First, the minimum number of target proteins required on a cell for it to be isolated was determined. Second, the importance of the primary antibody affinity was investigated, using a series of Fab mutants with known kinetics and it was shown that despite starting with sub-nanomolar affinity, improving Fab affinity increased cell isolation. Third, the influence of the connection between the primary antibody and the bead was studied by comparing Fab bridged to the magnetic bead via a secondary antibody, Protein L or streptavidin; the high affinity biotin-streptavidin linkage increased isolation sensitivity by an order of magnitude. Fourth, the effect of manipulating cytoskeletal polymerization and cell membrane fluidity using small molecules was tested; cholesterol depletion decreased isolation and cholesterol loading increased cell isolation. The insights from these observations were then applied to isolate a panel of cell lines expressing a wide range of surface HER2. While the standard approach isolated less than 10% of low HER2 expressing cancer cells from spiked rabbit and human blood, our enhanced approach with the optimized cholesterol level, antibody affinity and antibody-bead linkage could specifically isolate more than 80% of such cells. The final part of this work focussed on developing an antibody clamp that could physically restrict the antigen within its binding site on the Fab and prevent antigen dissociation, using the HER2-Fab complex and the anti-myc peptide antibody 9E10. Work from this thesis provides useful insights into the molecular and cellular parameters guiding immunomagnetic cell isolation and can be used to extend the range of target receptors and biomarkers for tumour cell isolation and other types of cell separation, thereby enhancing the power and capacity of this approach.
APA, Harvard, Vancouver, ISO, and other styles
4

Gomes, Ana Rita Coelho. "Design of a Novel Phage Display Vector to Improve Enrichment of Phages with Antigen-Specific Nanobodies and to Identify the Nanobody Clones of Highest Affinity." Master's thesis, 2019. http://hdl.handle.net/10362/89178.

Full text
Abstract:
Although phage display-based enrichments became a standard procedure, they still suffer from some drawbacks. Nonspecific phage binding limits the enrichment that can be achieved per se-lection round and therefore, in most cases, at least three or four rounds are required to identify the antigen binding nanobodies (Nbs) from the library. Moreover, the release of the phages captured via their antigen-specific Nb on the immobilized antigen is accomplished most often, by a pH shock that will also release the a-specific absorbed phages, thereby generating an unwanted back-ground. However, the biggest shortcoming is the difficulty to identify the Nb of best binding affinity. We now have to ferment and purify all individual Nb clones to homogeneity and measure their affinity parameters one after the other. This is very tedious, certainly, as the identified Nbs often share a high degree of amino acid sequence identity, which makes it impossible to predict the one having the best affinity. The objective of this thesis aimed to modify the phage display vector so that one round of selection will be sufficient, while the affinity of all antigen-positive Nbs can be compared immediately after ELISA. Firstly, a vector containing the Calmodulin Binding Peptide (CBP) tag was created, by substitut-ing the hemagglutinin (HA) tag present in a pMECS-GG plasmid by the CBP tag. Moreover, 6 Nbs with well-known and variable kinetic binding rates were also inserted into the vector pMECS-CBP. Next, the vector was used in a phage display setting, where two mini libraries comprising the 6 Nbs were made. One library had the conventional pMECS vector while the other was made using the pMECS-CBP vector. Although an enrichment of 1000 times was achieved using pMECS, pMECS-CBP failed to show any enrichment, supporting the hypothesis that Nb-CBP encountered serious expression problems. To investigate the validity of this hypothesis, periplasmic expression of Nb-CBP was performed and compared with that of the Nb without the tag. While the Nb yielded almost 4 mg per liter of culture media, the Nb-CBP could only be obtained at 0.63 mg per liter culture. Moreover, the Nb-CBP couldn’t be detected on a western blot. Several methods were used, such as adding lysozyme to improve the periplasmic extraction step, expressing 5 different colonies to check if there was a homogeneity of expression between them. In all meth-ods, the amount produced always remained below 1 mg per liter and Nb-CBP protein couldn’t be detected in any step of expression by Coomassie stained SDS-PAGE or western blot. Additionally, a high yield expressing-protein (SIRPα) was cloned into the CBP vector to identify whether the expression problem was caused by the peptide tag itself or by the Nb-CBP combina-tion. Even though SIRPα was obtained at a yield of 8.7 mg/L of culture when expressed from a vector not containing the CBP, its expressed yield using the CBP vector, dropped to 0.7 mg/L of culture, indicating that the CBP tag is incompatible with good periplasmic expression. Lastly, a nucleotide alignment of our CBP tag with a previously reported one, revealed differences in two Arginine codons, two Alanine codons and one Lysine codon. Moreover, our sequence employed two codons, AGA and CGG, rarely used in E. coli, which might be linked to the re-duced expression levels that we observed during this thesis.
APA, Harvard, Vancouver, ISO, and other styles
5

Harvey, Barrett Rowland. "Anchored periplasmic expression (APEx): a versatile technology for the flow cytometric selection of high affinity antibodies from Escherichia coli expressed libraries." Thesis, 2003. http://hdl.handle.net/2152/636.

Full text
APA, Harvard, Vancouver, ISO, and other styles
6

Harvey, Barrett Rowland Georgiou George. "Anchored periplasmic expression (APEx) a versatile technology for the flow cytometric selection of high affinity antibodies from Escherichia coli expressed libraries /." 2003. http://wwwlib.umi.com/cr/utexas/fullcit?p3119523.

Full text
APA, Harvard, Vancouver, ISO, and other styles
7

Van, Blarcom Thomas John. "Antibody discovery and engineering using the anchored periplasmic expression (APEx) Escherichia coli display system with flow cytometric selection." 2009. http://hdl.handle.net/2152/6903.

Full text
Abstract:
The development of recombinant proteins for therapeutic applications has revolutionized the pharmaceutical industry. In particular, monoclonal antibodies are the safest class of all therapeutic molecules and account for the majority of recombinant proteins currently undergoing clinical trials. A variety of technologies exist to engineer antibodies with a desired binding specificity and affinity, both of which are a prerequisite for therapeutic applications. This dissertation describes the implementation of a novel combinatorial library screening technology for the discovery and engineering of antibodies with unique binding properties. Combinatorial library screening technologies are used for the in vitro isolation of antibodies from large ensembles of proteins (libraries) typically produced by microorganisms using molecular biology techniques. Our lab has developed a powerful antibody discovery technology that relies on E. coli display by anchored periplasmic expression, otherwise known as APEx. First, I compared the effects of using combinatorial libraries comprising either smaller, monovalent single-chain antibody fragments (scFv), or the much larger, bifunctional full-length IgG antibodies. These technologies were used to isolate a small panel of antigen specific antibodies from the same library of antibody variable domains amplified from a mouse immunized with the Protective Antigen (PA) component from Bacillus anthracis, the causative agent of anthrax. Overall, IgG display resulted in the isolation of a broader panel of variable domain sequences. Most of these variable domains exhibited substantially reduced affinity when expressed as scFvs, which is consistent with the finding that none of these could be isolated from the equivalent scFv library. These results indicate that the antibody format used during in vitro selection affects which antibody variable domains will be discovered. Second, I developed several modifications of the APEx methodology to allow for more efficient recovery of antibodies with desired properties. Specifically, the system was reengineered to simultaneously account for antibody binding and expression levels in order to isolate the highest affinity antibodies with favorable expression characteristics. Third, the new approach, coupled with optimized fluorescence activated cell sorting (FACS) settings, was used to increase the affinity of an antibody by 35-fold resulting in a K[subscript D] of 100 pM. It was demonstrated that genetic transfer of this high affinity antibody specific for the V antigen of Yersinia pestis, the etiologic agent of the plague, conferred increased protection against intranasal challenge with a 363 LD₅₀ of Y. pestis in mice.
text
APA, Harvard, Vancouver, ISO, and other styles
8

Držmíšek, Jakub. "Produkce a sekrece faktorů virulence Bordetella pertussis." Master's thesis, 2015. http://www.nusl.cz/ntk/nusl-353805.

Full text
Abstract:
Bordetella pertussis is a strictly human pathogen and causative agent of infectious respiratory disease called whooping cough. In order to establish successful infection and colonization of the host, B. pertussis uses a broad spectrum of virulence factors such as adhesins (filamentous hemagglutinin, pertactin, and fimbriae) and toxins (adenylate cyclase and pertussis toxins). In addition, the type 3 secretion system (T3SS) was also found in the genus Bordetella. In connection to our previous characterisation of B. pertussis strain lacking the gene encoding RNA chaperone Hfq (Δhfq), which proved that Hfq is required for T3SS functionality, the recombinant T3SS proteins BopB, BopD, BopC and BopN were purified to homogeneity. Next, the specific antibodies were obtained using purified recombinant proteins in order to study the production of the T3SS components in B. pertussis. Using refined anti- BopC antibodies it was for the first time shown that laboratory-adapted B. pertussis strain secretes BopC protein into medium. The recombinant translocators BopB and BopD were also used to examine their pore-forming activity using planar black lipid membranes. Based on the characterisation of hfq deletion mutant, having impaired production of membrane proteins when compared to the wild type, mass spectrometry...
APA, Harvard, Vancouver, ISO, and other styles
9

Xu, Yali. "Identification of Factors Limiting Heterologous Lipase Expression in the Cytoplasm and the Periplasm as well as Display on Cell Surface of Escherichia coli." Thesis, 2008. http://hdl.handle.net/10012/3840.

Full text
Abstract:
Lipase B from Pseudozyma antarctica (PalB), had been expressed in several recombinant protein hosts and showed very good transesterification activity for biodiesel production. However, the functional expression could not be demonstrated until recently in the most popular recombinant protein expression system, e.g. Escherichia coli, and the expression performance stands improvement. The probable reason is that PalB is a lipase with more hydrophobic surface and three disulfide bonds and thus may not be easily expressed in E. coli functionally. This thesis focuses on the identification of factors limiting heterologous expression of PalB in E. coli through a systematic study by using several strategies, including the different expression compartments, fusion tags, folding factors, and host strains. Functional expression of PalB in the cytoplasm of E. coli was explored using BL21(DE3) and its mutant derivative Origami B(DE3) as the host. Bioactive PalB was obtained in the reduced cytoplasm of BL21(DE3), implying that the formation of disulfide bond was not strictly required for functional expression. However, the expression was ineffective and was primarily limited by formation of PalB inclusion bodies and growth arrest, both of which were associated with PalB misfolding and deteriorated physiology. The culture performance in terms of cell growth and PalB expression level could be significantly improved by simultaneous coexpression of multiple chaperones of trigger factor and GroEL/ES, but not individual coexpression of either one of them. It was proposed that the two chaperones mediate the early stage and late stage of cytoplasmic PalB folding and would be required simultaneously for boosting both the overall PalB synthesis rate and the cytoplasmic folding efficiency. On the other hand, a much higher bioactive PalB was produced in Origami B(DE3) harboring the same PalB expression vector. Furthermore, the significant high bioactive PalB was produced by coexpression of periplasmic folding factor without a signal peptide (e.g., coexpression of DsbA, and DsbC). Coexpression of DsbA was found to be effective in enhancing PalB expression and such an improvement was more pronounced in Origami B(DE3), suggesting that both folding and disulfide bond formation could be the major factors limiting PalB expression. The fusion tag technique was also explored by constructing several PalB fusions for the evaluation of their expression performance. While the solubility was enhanced for most PalB fusions, only the DsbA tag was effective in boosting PalB activity possibly via both enhanced solubility and correct disulfide bond formation. Our results suggest that solubilization of PalB fusions did not necessarily result in the development of PalB activity which could be closely associated with correct disulfide bond formation. While PalB was stably expressed in the cytoplasm, most of the expressed gene product aggregated in cells as inactive inclusion bodies. In contrast, PalB was extremely unstable when expressed in the periplasm, also leading to poor expression performance. Such unstable PalB can be rescued by coexpression of several periplasmic folding factors, such as DegP, FkpA, DsbA, and DsbC, but not cytoplasmic chaperones. As a result, the performance for functional PalB expression in the periplasm was significantly improved. This is the first report demonstrating the use of folding factors to rescue the extremely unstable gene product that is otherwise completely degradable. On the other hand, functional expression of PalB in the periplasm was explored using four fusion tags, e.g., DsbC, DsbA, maltose binding protein (MBP), and FLAG in the sequence of increasing expression efficacy. Amongst these fusion tags for functional expression of PalB, FLAG and MBP appear to be the most effective ones in terms of boosting enzyme activity and enhancing solubility of gene products, respectively. Overexpression of these PalB fusions often resulted in concomitant formation of insoluble inclusion bodies. Coexpression of a selection of periplasmic folding factors, including DegP (and its mutant variant of DegPS210A), FkpA, DsbA, DsbC, and a cocktail of SurA, FkpA, DsbA, and DsbC, could improve the expression performance. Coexpression of DsbA appeared to be the most effective in reducing the formation of inclusion bodies for the four PalB fusions, implying that functional expression of PalB could be limited by initial bridging of disulfide bonds. Culture performance for functional expression of PalB was optimized by overexpressing FLAG-PalB with DsbA coexpression, resulting in a high volumetric PalB activity of 360 U/liter. Without extracting protein from cells the whole cell can be directly used as a platform for the immobilized enzyme. Proof-of-concept experimentation was conducted by PalB display on the E. coli cell surface. By fusing the palB gene in between the signal peptide phoA and an autotransporter Protein EstA’s gene under the lac promoter, PalB was successfully displayed on the E. coli cell surface. However, cells encountered a severe physiological stress. Coexpression of various periplasmic folding factors, e.g., DegP, SurA, DsbA and DsbC could erease the physiological stress, but only DsbA was demonstrated to be effective to restore cell physiology and increase PalB expression level. Key words: enzyme, Escherichia coli, chaperone, folding factor, fusion tag, gene expression, Pseudozyma antarctica, lipase B, recombinant protein production
APA, Harvard, Vancouver, ISO, and other styles

Book chapters on the topic "Periplasmic Protein Expression"

1

Garvis, S. G., G. J. Puzon, and M. E. Konkel. "Cloning, Sequencing, and Expression of a Campylobacter Jejuni Periplasmic Binding Protein (P29) Involved in Histidine Transport." In Advances in Experimental Medicine and Biology, 263–64. Boston, MA: Springer US, 1997. http://dx.doi.org/10.1007/978-1-4899-1828-4_42.

Full text
APA, Harvard, Vancouver, ISO, and other styles
We offer discounts on all premium plans for authors whose works are included in thematic literature selections. Contact us to get a unique promo code!

To the bibliography