Relevant bibliographies by topics / Phosphopeptide enrichment

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  1. Journal articles
  2. Dissertations / Theses
  3. Book chapters
  4. Conference papers

Academic literature on the topic 'Phosphopeptide enrichment'

Author: Grafiati
Published: 4 June 2021
Last updated: 17 February 2022

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Journal articles on the topic "Phosphopeptide enrichment"

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Mullis, B. Todd, Sunil Hwang, L. Andrew Lee, et al. "Automating Complex, Multistep Processes on a Single Robotic Platform to Generate Reproducible Phosphoproteomic Data." SLAS DISCOVERY: Advancing the Science of Drug Discovery 25, no. 3 (2019): 277–86. http://dx.doi.org/10.1177/2472555219878152.

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Mass spectrometry-based phosphoproteomics holds promise for advancing drug treatment and disease diagnosis; however, its clinical translation has thus far been limited. This is in part due to an unstandardized and segmented sample preparation process that involves cell lysis, protein digestion, peptide desalting, and phosphopeptide enrichment. Automating this entire sample preparation process will be key in facilitating standardization and clinical translation of phosphoproteomics. While peptide desalting and phosphopeptide enrichment steps have been individually automated, integrating these t
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Maccarrone, Giuseppina, Nikolaus Kolb, Larysa Teplytska, et al. "Phosphopeptide enrichment by IEF." ELECTROPHORESIS 27, no. 22 (2006): 4585–95. http://dx.doi.org/10.1002/elps.200600145.

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Ding, Fengjuan, Yameng Zhao, Haiyan Liu, and Weibing Zhang. "Core–shell magnetic microporous covalent organic framework with functionalized Ti(iv) for selective enrichment of phosphopeptides." Analyst 145, no. 12 (2020): 4341–51. http://dx.doi.org/10.1039/d0an00038h.

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We fabricated a core-shell magnetic Ti<sup>4+</sup>-functionalized covalent organic framework composite to selectively capture phosphopeptides in biosamples. This method is applicable to achieve rapid, selective and efficient phosphopeptide analysis.
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Ondrej, Martin, Pavel Rehulka, Helena Rehulkova, Rudolf Kupcik, and Ales Tichy. "Fractionation of Enriched Phosphopeptides Using pH/Acetonitrile-Gradient-Reversed-Phase Microcolumn Separation in Combination with LC–MS/MS Analysis." International Journal of Molecular Sciences 21, no. 11 (2020): 3971. http://dx.doi.org/10.3390/ijms21113971.

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Mass spectrometry (MS) is a powerful and sensitive method often used for the identification of phosphoproteins. However, in phosphoproteomics, there is an identified need to compensate for the low abundance, insufficient ionization, and suppression effects of non-phosphorylated peptides. These may hamper the subsequent liquid chromatography–mass spectrometry/mass spectrometry (LC–MS/MS) analysis, resulting in incomplete phosphoproteome characterization, even when using high-resolution instruments. To overcome these drawbacks, we present here an effective microgradient chromatographic technique
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Hou, Junjie, Zhensheng Xie, Peng Xue, et al. "Enhanced MALDI-TOF MS Analysis of Phosphopeptides Using an Optimized DHAP/DAHC Matrix." Journal of Biomedicine and Biotechnology 2010 (2010): 1–12. http://dx.doi.org/10.1155/2010/759690.

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Selecting an appropriate matrix solution is one of the most effective means of increasing the ionization efficiency of phosphopeptides in matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS). In this study, we systematically assessed matrix combinations of 2, 6-dihydroxyacetophenone (DHAP) and diammonium hydrogen citrate (DAHC), and demonstrated that the low ratio DHAP/DAHC matrix was more effective in enhancing the ionization of phosphopeptides. Low femtomole level of phosphopeptides from the tryptic digests ofα-casein andβ-casein was readily detected by
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Palmisano, Giuseppe, Benjamin L. Parker, Kasper Engholm-Keller, et al. "A Novel Method for the Simultaneous Enrichment, Identification, and Quantification of Phosphopeptides and Sialylated Glycopeptides Applied to a Temporal Profile of Mouse Brain Development." Molecular & Cellular Proteomics 11, no. 11 (2012): 1191–202. http://dx.doi.org/10.1074/mcp.m112.017509.

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We describe a method that combines an optimized titanium dioxide protocol and hydrophilic interaction liquid chromatography to simultaneously enrich, identify and quantify phosphopeptides and formerly N-linked sialylated glycopeptides to monitor changes associated with cell signaling during mouse brain development. We initially applied the method to enriched membrane fractions from HeLa cells, which allowed the identification of 4468 unique phosphopeptides and 1809 formerly N-linked sialylated glycopeptides. We subsequently combined the method with isobaric tagging for relative quantification
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Gokmen-Polar, Yesim, Jason D. True, Edyta Vieth, Guihong D. Qi, Amber L. Mosley, and Sunil S. Badve. "Phosphopeptide mapping of DLC1 in ER+ breast cancer reveals AMOTL2, a key hippo pathway component, as an important target." Journal of Clinical Oncology 35, no. 15_suppl (2017): 11592. http://dx.doi.org/10.1200/jco.2017.35.15_suppl.11592.

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11592 Background: Metastases suppressor genes are believed to control tumor progression and metastases. Deleted in Liver Cancer 1 (DLC1) acts as a gatekeeper for tumor and metastasis suppression. Low expression of DLC1 correlates with poor prognosis in patients with ER+ breast cancer. It is essential to understand the impact of DLC1 and its functional network in preventing tumor and metastasis suppression. Methods: T47D cells with stable DLC1-Full-Length (DLC1-FL) were generated using mammalian expression cloning vector, pcDNA3.1+/C-(K)-DYK, and CloneEZ™ technology. Growth rate of control and
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Sandison, Mairi E., K. Tveen Jensen, F. Gesellchen, J. M. Cooper, and A. R. Pitt. "Magnetite-doped polydimethylsiloxane (PDMS) for phosphopeptide enrichment." Analyst 139, no. 19 (2014): 4974–81. http://dx.doi.org/10.1039/c4an00750f.

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Leitner, Alexander. "Phosphopeptide enrichment using metal oxide affinity chromatography." TrAC Trends in Analytical Chemistry 29, no. 2 (2010): 177–85. http://dx.doi.org/10.1016/j.trac.2009.08.007.

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Beltran, Luisa, and Pedro R. Cutillas. "Advances in phosphopeptide enrichment techniques for phosphoproteomics." Amino Acids 43, no. 3 (2012): 1009–24. http://dx.doi.org/10.1007/s00726-012-1288-9.

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Dissertations / Theses on the topic "Phosphopeptide enrichment"

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Batalha, Íris Cristina da Luz. "Engineered structures for the profiling and enrichment of the phosphoproteome." Doctoral thesis, Faculdade de Ciências e Tecnologia, 2014. http://hdl.handle.net/10362/13107.

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Dissertação para obtenção do Grau de Doutor em Bioengenharia (MIT-Portugal)<br>O capítulo 1 foi parcialmente reproduzido de um artigo previamente publicado sob permissão dos editores originais e sujeito às restrições de cópia impostos pelos mesmos.<br>Fundação para a Ciência e a Tecnologia - (SFRH/BD/64427/2009) and the project PTDC/EBB-BIO/102163/2008 assigned to Prof. Cecília Roque, and also to the Associate Laboratory REQUIMTE (PEst-C/EQB/LA0006/2013)
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Ewen-Al-Kashi, Sally. "Functional group imprinted polymers : towards a novel method of phosphopeptide enrichment using molecular imprinting technology." Thesis, Imperial College London, 2013. http://hdl.handle.net/10044/1/18943.

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A range of techniques exists for the characterisation of the phosphoproteome, the most effective of which is mass spectrometry (MS); however, enrichment of phosphorylated peptides is a necessary prerequisite. Current enrichment strategies are inadequate, either due to low selectivity or because they involve chemical modification of the sample. Adapting molecular imprinting technology, we have designed and synthesised a series of prototype synthetic phospho-receptors, termed "Functional Group Imprinted Polymers" (FIPs). We define 'FIPs' as imprinted polymers that selectively recognise molecules
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Haaf, Erik. "Qualitative und quantitative Analyse der Phosphorylierung von Proteinen der circadianen Uhr." Doctoral thesis, Humboldt-Universität zu Berlin, Mathematisch-Naturwissenschaftliche Fakultät I, 2012. http://dx.doi.org/10.18452/16578.

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Die Phosphorylierung als posttranslationale Modifikation von Proteinen spielt bei Signalwegen in Zellen eine große Rolle. Für die Entschlüsselung des molekularen Mechanismus der circadianen Uhr ist es daher von Interesse, die Phosphorylierungsstellen beteiligter Proteine zu identifizieren. Im Rahmen dieser Arbeit wurden die Proteine Period I und II mittels Flüssigkeitschromatographie und Tandemmassenspektrometrie (LC-MS/MS) auf Phosphorylierungsstellen untersucht. Hierbei lag der Fokus auf der Verbesserung bestehender Methoden, um eine bessere und umfassendere Identifizierung der Phosphoryli
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Dunn, Jamie D. "Polymer-modified plates for enrichment of phosphopeptides prior to analysis by matrix-assisted laser desorption/ionization mass spectrometry." Diss., Connect to online resource - MSU authorized users, 2007.

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Subedi, Prabal [Verfasser], Katrin [Gutachter] Marcus, and Dirk [Gutachter] Wolters. "Use of molecularly imprinted polymers for enrichment of phosphopeptides and alpha-Synuclein, and the mass spectrometric analyses of alpha-Synuclein in \(\it post-mortem\) human brains / Prabal Subedi ; Gutachter: Katrin Marcus, Dirk Wolters." Bochum : Ruhr-Universität Bochum, 2016. http://d-nb.info/1123283117/34.

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Ke, Juin-Yi, and 柯鈞翊. "Facile Preparation of Metal Oxide/Polyarginine Hybrids and their Application in Phosphopeptide Enrichment." Thesis, 2013. http://ndltd.ncl.edu.tw/handle/78643919483293346814.

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碩士<br>國立暨南國際大學<br>應用化學系<br>102<br>Here we report a rapid and facile approach for synthesizing metal oxide hybrids material. Polyarginine-coated Nanodiamonds (PAND) were utilized as a multiplex loading platform to accommodate various metal oxides (MOx) and developing them into new materials containing two different metals. We have estimated the absorption of MOx for PAND by measuring the particle size in different ratio. MOx/PA-ND was feasible to compositing two or more different metal oxide onto PAND, and it can also controlled unequal contents of different metal oxides and confirm by EDS anal
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Fíla, Jan. "Úloha fosforylace proteinů v progamické fázi vývoje samčího gametofytu tabáku." Doctoral thesis, 2016. http://www.nusl.cz/ntk/nusl-341981.

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v angličtině (English abstract) Tobacco male gametophyte has a strongly dehydrated cytoplasm and represents a metabolically inactive stage. Upon cytoplasm rehydration, pollen grain becomes metabolically active and after the activation is finished, the pollen tube growth through a selected pollen aperture starts. The rehydration together with metabolic activation are accompanied by the regulation of translation and post-translational modifications (mainly phosphorylation) of the existing proteins. In this Ph.D. thesis, there were identified phosphopeptides from tobacco (Nicotiana tabacum) matur
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Zeng, Yi-You, and 曾乙祐. "Mesoporous TiO2 Nanowires for Selective and Reproducible Enrichment of Phosphopeptides." Thesis, 2012. http://ndltd.ncl.edu.tw/handle/28519707295374520955.

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碩士<br>國立暨南國際大學<br>應用化學系<br>100<br>Abstract Titanium dioxide (TiO2) affinity enrichment has been widely used in phosphoproteomic studies. Although many attempts have been made to fabricate TiO2-based materials for selective enrichment of phosphopeptides, the effects of structural properties, such as crytsallinity, pore diameter, porosity, and specific surface area of TiO2, on selectivity has not been widely explored. Herein, we synthesized TiO2 nanowires with well-defined nanopores and high specific surface area for selective and reproducible enrichment of phosphopeptides from complex peptide m
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YE, YU-YANG, and 葉羽揚. "Preparation of Zirconia Hollow Nanocage for Specific Enrichment of Phosphopeptides." Thesis, 2019. http://ndltd.ncl.edu.tw/handle/947887.

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碩士<br>國立暨南國際大學<br>應用化學系<br>107<br>In this work, we have developed a novel synthesis strategy for the production of ZrO2 hollow nanocage(ZrO2 HC)for highly efficient enrichment of phosphopeptides via a Nanodiamond(ND)-assisted template method. We coated the silica dioxide and zirconium dioxide on the ND by sol-gel method, and the ND template was removed by calcination. The nanostructure of the obtained ZrO2 hollow nanocage was characterized by nitrogen adsorption-desorption isotherms, energy-dispersive X-ray spectroscopy(EDS),transmission electron microscopy (TEM). The obtained ZrO2 HC exhibite
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Lu, Jing-Wun, and 盧敬文. "Facile Synthesis of Titanium Sulfonate-Functionalized Nanodiamonds for Selective Enrichment of Phosphopeptides." Thesis, 2017. http://ndltd.ncl.edu.tw/handle/3889xh.

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博士<br>國立暨南國際大學<br>應用化學系<br>105<br>In this work, we have developed a novel synthesis route for the production of titanium (IV) sulfonate-functionalized nanodiamonds (Ti4+-SND) as Ti4+-IMAC (Immobilized metal-ion affinity chromatography)adsorbents for selective enrichment of phosphopeptides. Nanodiamonds were first functionalized with polyarginine via EDC-mediated coupling reaction and then the titanium-sulfonate functionalization was performed by mixing with polystyrene sulfate and TiCl4 solutions. The obtained Ti4+-SNDs were used to specific capture of phosphopeptides from standard protein dig
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Book chapters on the topic "Phosphopeptide enrichment"

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Thingholm, Tine E., and Martin R. Larsen. "Phosphopeptide Enrichment by Immobilized Metal Affinity Chromatography." In Phospho-Proteomics. Springer New York, 2016. http://dx.doi.org/10.1007/978-1-4939-3049-4_8.

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Batalha, Íris L., and Ana Cecília A. Roque. "Phosphopeptide Enrichment Using Various Magnetic Nanocomposites: An Overview." In Phospho-Proteomics. Springer New York, 2016. http://dx.doi.org/10.1007/978-1-4939-3049-4_13.

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Yu, Li-Rong, and Timothy Veenstra. "Phosphopeptide Enrichment Using Offline Titanium Dioxide Columns for Phosphoproteomics." In Methods in Molecular Biology. Humana Press, 2013. http://dx.doi.org/10.1007/978-1-62703-360-2_8.

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Soufi, Boumediene, Christoph Täumer, Maja Semanjski, and Boris Macek. "Phosphopeptide Enrichment from Bacterial Samples Utilizing Titanium Oxide Affinity Chromatography." In Methods in Molecular Biology. Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-8695-8_16.

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Lassowskat, Ines, Wolfgang Hoehenwarter, Justin Lee, and Dierk Scheel. "Phosphoprotein Enrichment Combined with Phosphopeptide Enrichment to Identify Putative Phosphoproteins During Defense Response in Arabidopsis thaliana." In Methods in Molecular Biology. Springer New York, 2016. http://dx.doi.org/10.1007/978-1-4939-3356-3_30.

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Mithoe, Sharon C., and Frank L. H. Menke. "Phosphopeptide Immuno-Affinity Enrichment to Enhance Detection of Tyrosine Phosphorylation in Plants." In Plant Phosphoproteomics. Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2648-0_10.

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Nakagami, Hirofumi. "StageTip-Based HAMMOC, an Efficient and Inexpensive Phosphopeptide Enrichment Method for Plant Shotgun Phosphoproteomics." In Methods in Molecular Biology. Humana Press, 2013. http://dx.doi.org/10.1007/978-1-62703-631-3_40.

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Dickhut, Clarissa, Sonja Radau, and René P. Zahedi. "Fast, Efficient, and Quality-Controlled Phosphopeptide Enrichment from Minute Sample Amounts Using Titanium Dioxide." In Shotgun Proteomics. Springer New York, 2014. http://dx.doi.org/10.1007/978-1-4939-0685-7_28.

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Oh, Yeonyee, William L. Franck, and Ralph A. Dean. "Sequential Phosphopeptide Enrichment for Phosphoproteome Analysis of Filamentous Fungi: A Test Case Using Magnaporthe oryzae." In Methods in Molecular Biology. Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-8724-5_7.

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Nika, Heinz, Ruth Hogue Angeletti, and David H. Hawke. "Phosphopeptide Enrichment by Covalent Chromatography After Solid Phase Derivatization of Protein Digests on Reversed Phase Supports." In Phospho-Proteomics. Springer New York, 2016. http://dx.doi.org/10.1007/978-1-4939-3049-4_3.

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Conference papers on the topic "Phosphopeptide enrichment"

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Sparnacci, Katia, Diego Antonioli, Valentina Gianotti, Michele Laus, Aldo Laganà, and Susy Piovesana. "Multishell hybrid magnetic nanoparticles for phosphopeptide enrichment." In 9TH INTERNATIONAL CONFERENCE ON “TIMES OF POLYMERS AND COMPOSITES”: From Aerospace to Nanotechnology. Author(s), 2018. http://dx.doi.org/10.1063/1.5046036.

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Farnsworth, Charles L., Yiying Zhu, and Matthew Stokes. "Abstract 223: Targeting critical signaling nodes using multiplexed antibody based phosphopeptide enrichment with iMRM validation." In Proceedings: AACR Annual Meeting 2017; April 1-5, 2017; Washington, DC. American Association for Cancer Research, 2017. http://dx.doi.org/10.1158/1538-7445.am2017-223.

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