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Journal articles on the topic 'Phylogenetic analysis'

Author: Grafiati

Published: 4 June 2021

Last updated: 25 July 2025

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1

Petersen, G., and O. Seberg. "Phylogenetic Analysis of allopolyploid species." Czech Journal of Genetics and Plant Breeding 41, Special Issue (2012): 28–37. http://dx.doi.org/10.17221/6129-cjgpb.

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2

Brower, A. V. "Phylogenetic Analysis." Science 276, no. 5317 (1997): 1317b—1321. http://dx.doi.org/10.1126/science.276.5317.1317b.

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3

Hillis, David M. "Phylogenetic analysis." Current Biology 7, no. 3 (1997): R129—R131. http://dx.doi.org/10.1016/s0960-9822(97)70070-8.

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4

Wiesemüller, Bernhard, and Hartmut Rothe. "Interpretation of Bootstrap Values in Phylogenetic Analysis." Anthropologischer Anzeiger 64, no. 2 (2006): 161–65. http://dx.doi.org/10.1127/anthranz/64/2006/161.

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5

Mecham, Jesse, Mark Clement, Quinn Snell, Todd Freestone, Kevin Seppi, and Keith Crandall. "Jumpstarting phylogenetic analysis." International Journal of Bioinformatics Research and Applications 2, no. 1 (2006): 19. http://dx.doi.org/10.1504/ijbra.2006.009191.

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6

Tolkoff, Max R., Michael E. Alfaro, Guy Baele, Philippe Lemey, and Marc A. Suchard. "Phylogenetic Factor Analysis." Systematic Biology 67, no. 3 (2017): 384–99. http://dx.doi.org/10.1093/sysbio/syx066.

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7

Zavada, Michael S., and Muyeol Kim. "Phylogenetic analysis ofUlmaceae." Plant Systematics and Evolution 200, no. 1-2 (1996): 13–20. http://dx.doi.org/10.1007/bf00984745.

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8

Adams, Dean C. "PHYLOGENETIC META-ANALYSIS." Evolution 62, no. 3 (2008): 567–72. http://dx.doi.org/10.1111/j.1558-5646.2007.00314.x.

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9

Irinyi, László, György Kövics, and Erzsébet Sándor. "Phylogenetic analysis of Phoma species." Acta Agraria Debreceniensis, no. 26 (July 16, 2007): 100–107. http://dx.doi.org/10.34101/actaagrar/26/3062.

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The cosmopolitan Phoma genus contains mainly phytopathogenic, opportunistic parasites, and saprophyte fungal species. Up to now, the characterization of Phoma species and other taxa of Phoma has been determined on the basis of morphology on standardized media, and gene sequence analysis was only used as a confirmative or distinctive complement.In this study, we tried to find molecular markers which can be used as phylogenetics markers in the molecular based classification in the Phoma genus.We employed a part of the translation elongation factor 1 subunit alpha (EF-1α=tef1) containing both int

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10

Caldwell, Michael W. "Ichthyosauria: A preliminary phylogenetic analysis of diapsid affinities." Neues Jahrbuch für Geologie und Paläontologie - Abhandlungen 200, no. 3 (1996): 361–86. http://dx.doi.org/10.1127/njgpa/200/1996/361.

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11

Sose, Pritam P. "Monkeypox Genome Analysis and Phylogenetic study using Biopython." International Journal of Research Publication and Reviews 5, no. 10 (2024): 222. http://dx.doi.org/10.55248/gengpi.5.1024.2712.

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12

Shikha, Pandey, Sarin Kumud, and Singh Sumer. "Phylogenetic Analysis of the Genes Responsible for Albinism: Albinism Phylogenetic Analysis." Trends in Pharmaceuticals and Nanotechnology 1, no. 1 (2018): 7–27. https://doi.org/10.5281/zenodo.2528221.

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<em> </em>The aims of the research were to identify the genes responsible for Albinism. The genes have been identified and analyzed using BLAST.The genes responsible for causing albinism are OCA and OA.Albinism is caused by a mutation in one of several genes. Four forms of OCA are now recognized – OCA1, OCA2, OCA3 and OCA4; some are further divided into subtypes.Each of these genes provides instructions for making one of several proteins involved in the production of melanin. Melanin is produced by cells called melanocytes, which are found in the skin and eyes. A mutation may result

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13

Otsuka, Yasushi, Chiharu Aoki, and Hiroyuki Takaoka. "Phylogenetic analysis of blackflies." Medical Entomology and Zoology 50, Supplement (1999): 69. http://dx.doi.org/10.7601/mez.50.69.

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14

FINK, W. L. "Microcomputers and Phylogenetic Analysis." Science 234, no. 4780 (1986): 1135–39. http://dx.doi.org/10.1126/science.234.4780.1135.

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15

Skupski, Marian P., David A. Jackson, and Donald O. Natvig. "Phylogenetic Analysis of HeterothallicNeurosporaSpecies." Fungal Genetics and Biology 21, no. 1 (1997): 153–62. http://dx.doi.org/10.1006/fgbi.1997.0966.

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16

J. Muhaidi, Mohammed, Mohammed A. Hamad, and Noor N. Al-hayani. "Molecular and Phylogenetic Analysis of Sheep Pox Virus in Iraq." Journal of Pure and Applied Microbiology 12, no. 4 (2018): 1809–14. http://dx.doi.org/10.22207/jpam.12.4.14.

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17

Vinay, Oraon, Prasad Bhupendra, and Singh Kiran. "16S rDNA-RFLP analysis of phylogenetic tree of Rhizobium bacteria." Indian Journal of Applied Research 3, no. 12 (2011): 474–76. http://dx.doi.org/10.15373/2249555x/dec2013/145.

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18

G. D.Sharma, G. D. Sharma, *. Dhritiman Chanda, and D. K. Jha D.K. Jha. "16S rDNA Sequence based Phylogenetic Analysis of Some Bacterial Phytoplasma." International Journal of Scientific Research 3, no. 3 (2012): 302–4. http://dx.doi.org/10.15373/22778179/march2014/101.

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19

Ho, Ju-shey. "Phylogenetic Analysis of Copepod Orders." Journal of Crustacean Biology 10, no. 3 (1990): 528. http://dx.doi.org/10.2307/1548343.

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20

Hillis, David M., J. J. Bull, Mary E. White, Marty R. Badgett, and Ian J. Molineux. "Experimental Approaches to Phylogenetic Analysis." Systematic Biology 42, no. 1 (1993): 90. http://dx.doi.org/10.2307/2992559.

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21

Chadha, Tejpreet, and Adão Alexandre Trindade. "Phylogenetic analysis ofpbpgenes in treponemes." Infection Ecology & Epidemiology 3, no. 1 (2013): 18636. http://dx.doi.org/10.3402/iee.v3i0.18636.

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22

Hufford, Larry, and William C. Dickison. "A Phylogenetic Analysis of Cunoniaceae." Systematic Botany 17, no. 2 (1992): 181. http://dx.doi.org/10.2307/2419516.

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23

Dean, Deborah, and Kim Millman. "Phylogenetic Analysis of Chlamydia trachomatis." Infection and Immunity 67, no. 2 (1999): 1009–10. http://dx.doi.org/10.1128/iai.67.2.1009-1010.1999.

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24

Berčič, Rebeka Lucijana, Krisztián Bányai, Daniel Růžek, et al. "Phylogenetic Analysis of Lednice Orthobunyavirus." Microorganisms 7, no. 10 (2019): 447. http://dx.doi.org/10.3390/microorganisms7100447.

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Lednice virus (LEDV) has been detected in Culex modestus mosquitoes in several European countries within the last six decades. In this study, phylogenetic analyses of the complete genome segments confirm that LEDV belongs to the Turlock orthobunyavirus (Orthobunyavirus, Peribunyaviridae) species and is closely related to Umbre, Turlock, and Kedah viruses.

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25

Rajah.R, Nirmal, and Rufus Auxillia. "Phylogenetic Analysis of Neutral Ceramidase." International Journal of Computer Applications 108, no. 7 (2014): 18–23. http://dx.doi.org/10.5120/18923-0271.

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26

Furano, Anthony V., and Karen Usdin. "DNA “Fossils” and Phylogenetic Analysis." Journal of Biological Chemistry 270, no. 43 (1995): 25301–4. http://dx.doi.org/10.1074/jbc.270.43.25301.

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27

Paster, B. J., F. E. Dewhirst, W. G. Weisburg, et al. "Phylogenetic analysis of the spirochetes." Journal of Bacteriology 173, no. 19 (1991): 6101–9. http://dx.doi.org/10.1128/jb.173.19.6101-6109.1991.

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28

Xu, Shizhong. "Phylogenetic Analysis Under Reticulate Evolution." Molecular Biology and Evolution 17, no. 6 (2000): 897–907. http://dx.doi.org/10.1093/oxfordjournals.molbev.a026370.

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29

Edwards, S. V. "Natural selection and phylogenetic analysis." Proceedings of the National Academy of Sciences 106, no. 22 (2009): 8799–800. http://dx.doi.org/10.1073/pnas.0904103106.

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30

Craig, Walter, and Jonathon Stone. "Information and Phylogenetic Systematic Analysis." Information 6, no. 4 (2015): 811–32. http://dx.doi.org/10.3390/info6040811.

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31

Mohammed, Suroor Abood. "Molluscum Contagiosum genome: phylogenetic analysis." Diyala Journal For Pure Science 16, no. 4 (2020): 59–73. http://dx.doi.org/10.24237/djps.16.04.534b.

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32

Ives, A. R., and H. C. J. Godfray. "Phylogenetic Analysis of Trophic Associations." American Naturalist 168, no. 1 (2006): E1—E14. http://dx.doi.org/10.1086/505157.

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33

Shnyreva, A. A., and A. V. Shnyreva. "Phylogenetic analysis of Pleurotus species." Russian Journal of Genetics 51, no. 2 (2015): 148–57. http://dx.doi.org/10.1134/s1022795415020131.

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34

Dunn, C. W., X. Luo, and Z. Wu. "Phylogenetic Analysis of Gene Expression." Integrative and Comparative Biology 53, no. 5 (2013): 847–56. http://dx.doi.org/10.1093/icb/ict068.

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35

Koenemann, Stefan, Frederick R. Schram, Mario Hönemann, and Thomas M. Iliffe. "Phylogenetic analysis of Remipedia (Crustacea)." Organisms Diversity & Evolution 7, no. 1 (2007): 33–51. http://dx.doi.org/10.1016/j.ode.2006.07.001.

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36

Frickey, Tancred, and Andrei N. Lupas. "Phylogenetic analysis of AAA proteins." Journal of Structural Biology 146, no. 1-2 (2004): 2–10. http://dx.doi.org/10.1016/j.jsb.2003.11.020.

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37

Reid, S. M., P. R. Davies, and N. J. Knowles. "117. Phylogenetic analysis of vesiviruses." Research in Veterinary Science 74 (2003): 39. http://dx.doi.org/10.1016/s0034-5288(03)90116-0.

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38

LAKE, J. "Phylogenetic analysis and comparative genomics." Trends in Biotechnology 16 (November 1998): 22–23. http://dx.doi.org/10.1016/s0167-7799(98)00132-2.

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39

Jin-Chan, Wang, Qi Wei-Wei, Zhang Long-Xian, et al. "Phylogenetic analysis ofCryptosporidiumisolates in Henan." Chinese Journal of Agricultural Biotechnology 4, no. 3 (2007): 247–52. http://dx.doi.org/10.1017/s1479236207001957.

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AbstractThe functional mitochondrial protein alternative oxidase (AOX) gene was used as a marker to analyse the phylogenetic relationship betweenCryptosporidiumisolates. This gene was characterized, and the phylogentic tree was established fromCryptosporidiumisolates and compared to those generated from 18S rRNA and heat-shock protein 70 (HSP70) gene sequences. The present trial aimed at finding out whether the AOX gene is suitable for phylogenetic analysis of theCryptosporidiumgenus. The results revealed that the genusCryptosporidiumcontained the phylogenetically distinct speciesC. parvum,C.

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40

Liang, Dongmei, and Jianjun Qiao. "Phylogenetic Analysis of Antibiotic Glycosyltransferases." Journal of Molecular Evolution 64, no. 3 (2007): 342–53. http://dx.doi.org/10.1007/s00239-006-0110-2.

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41

Forst, Christian V., and Klaus Schulten. "Phylogenetic Analysis of Metabolic Pathways." Journal of Molecular Evolution 52, no. 6 (2001): 471–89. http://dx.doi.org/10.1007/s002390010178.

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42

Stein, William E. "Phylogenetic analysis and fossil plants." Review of Palaeobotany and Palynology 50, no. 1-2 (1987): 31–61. http://dx.doi.org/10.1016/0034-6667(87)90039-x.

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43

William, J., and O. Ballard. "Combining data in phylogenetic analysis." Trends in Ecology & Evolution 11, no. 8 (1996): 334. http://dx.doi.org/10.1016/0169-5347(96)81133-5.

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44

Ramirez-Flandes, S., and O. Ulloa. "Bosque: integrated phylogenetic analysis software." Bioinformatics 24, no. 21 (2008): 2539–41. http://dx.doi.org/10.1093/bioinformatics/btn466.

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45

Chappill, Jennifer A. "QUANTITATIVE CHARACTERS IN PHYLOGENETIC ANALYSIS." Cladistics 5, no. 3 (1989): 217–34. http://dx.doi.org/10.1111/j.1096-0031.1989.tb00487.x.

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46

Schuchert, P. "Phylogenetic analysis of the Cnidaria." Journal of Zoological Systematics and Evolutionary Research 31, no. 3 (2009): 161–73. http://dx.doi.org/10.1111/j.1439-0469.1993.tb00187.x.

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47

Otsuka, Yasushi, Chiharu Aoki, and Hiroyuki Takaoka. "Phylogenetic analysis of blackflies (Simulium)." Medical Entomology and Zoology 49, Supplement (1998): 32. http://dx.doi.org/10.7601/mez.49.32_1.

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48

Prasanna, Arun N., and Sarika Mehra. "Comprehensive Phylogenetic Analysis of Mycobacteria." IFAC Proceedings Volumes 46, no. 31 (2013): 101–6. http://dx.doi.org/10.3182/20131216-3-in-2044.00050.

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49

乔, 战龙. "Phylogenetic Analysis of Rab3A Gene." Bioprocess 08, no. 01 (2018): 1–10. http://dx.doi.org/10.12677/bp.2018.81001.

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50

Behjati, Mohaddeseh, Ibrahim Torktaz, and Amin Rostami. "Phylogenetic analysis of otospiralin protein." Advanced Biomedical Research 5, no. 1 (2016): 41. http://dx.doi.org/10.4103/2277-9175.178787.

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