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Journal articles on the topic 'Phylogenetic relationship'

Author: Grafiati

Published: 4 June 2021

Last updated: 25 July 2025

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1

Reif, Wolf-Ernst. "Problematic issues of cladistics: 12. Phylogenetic relationship." Neues Jahrbuch für Geologie und Paläontologie - Abhandlungen 237, no. 2 (2005): 161–84. http://dx.doi.org/10.1127/njgpa/237/2005/161.

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2

Kato, Masahiro. "THE PHYLOGENETIC RELATIONSHIP OF OPHIOGLOSSACEAE." TAXON 37, no. 2 (1988): 381–86. http://dx.doi.org/10.2307/1222147.

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3

Rita, Jayaraj. "MOLECULAR EVIDENCE OF PHYLOGENETIC RELATIONSHIP OF EMBIOPTERA AND RELATED GROUPS." International Journal of Zoology and Applied Biosciences 4, no. 3 (2019): 134–37. https://doi.org/10.5281/zenodo.3271621.

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Molecular evidence of phylogenetic relationship of embioptera and related groups has been attempted. Many evidence sexists for familial, ordinal and super ordinal relationship with stoneflies (Plecoptera). Also, based on resemblance in habitat, the termites (Isoptera) was included in studying the phylogenetic relationship. Bioinformatics tool was employed to confirm the close relationship. The taxonomic identification of Embiid species involves the study of anatomical differences in the structure of male genitalia which is taken as the main criterion. Bioinformatics tool was employed to confir

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4

Ari, E., O. Karaguzel, K. Onal, I. Polat, and M. Gocmen. "PHYLOGENETIC RELATIONSHIP OF TURKISH TERRESTRIAL ORCHIDS." Acta Horticulturae, no. 673 (May 2005): 155–60. http://dx.doi.org/10.17660/actahortic.2005.673.17.

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5

Ashok Kumar, J., K. Vinaya Kumar, S. Avunje, et al. "Phylogenetic Relationship Among Brackishwater Vibrio Species." Evolutionary Bioinformatics 16 (January 2020): 117693432090328. http://dx.doi.org/10.1177/1176934320903288.

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Vibriosis is regarded as an important disease of penaeid shrimps affecting larvae in hatcheries. Among the Vibrio species, Vibrio parahaemolyticus, Vibrio vulnificus, Vibrio furnissii, Vibrio campbellii, Vibrio harveyi, Vibrio alginolyticus, and Vibrio anguillarum are often associated with diseases in finfish and shellfish of brackishwater ecosystem. Accurate species differentiating methods for the organisms present in an ecosystem are required for precise classification of the species and to take steps for their management. Conventional methods like 16s rRNA phylogeny and multilocus sequence

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6

Gyuranecz, M., J. T. Foster, A. Dan, et al. "Worldwide Phylogenetic Relationship of Avian Poxviruses." Journal of Virology 87, no. 9 (2013): 4938–51. http://dx.doi.org/10.1128/jvi.03183-12.

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7

Steinharter, Thomas P., Gillian A. Cooper-Driver, and Gregory J. Anderson. "The phylogenetic relationship of Solanum flavonols." Biochemical Systematics and Ecology 14, no. 3 (1986): 299–305. http://dx.doi.org/10.1016/0305-1978(86)90105-5.

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8

Losos, Jonathan B. "Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species." Ecology Letters 11, no. 10 (2008): 995–1003. http://dx.doi.org/10.1111/j.1461-0248.2008.01229.x.

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9

Gao, Xuyong, Yuming Chen, Xiaowei Xu, et al. "Characteristics and Phylogenetic Analysis of the Complete Plastomes of Anthogonium gracile and Eleorchis japonica (Epidendroideae, Orchidaceae)." Horticulturae 11, no. 6 (2025): 698. https://doi.org/10.3390/horticulturae11060698.

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Phylogenetic relationships within the subtribe Arethusinae (Arethuseae: Epidendroideae: Orchidaceae) remain unresolved, with particular uncertainty surrounding the phylogenetic positions of Anthogonium gracile and Eleorchis japonica. The monophyly of this subtribe remains contentious, making it one of the challenging taxa in Orchidaceae phylogenetics. In this study, we sequenced and analyzed the complete plastome sequences of A. gracile and E. japonica for the first time, aiming to elucidate their plastome characteristics and phylogenetic relationships. Both plastomes exhibited a conserved qua

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10

Fan, Menglong, Zhixin Song, Ying Zhang, Xinlei Li, and Zhenyuan Sun. "Multi-Approach Unveils Potential Gene Introgression of Oil Camellias." Horticulturae 10, no. 12 (2024): 1252. http://dx.doi.org/10.3390/horticulturae10121252.

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The complex phylogenetic relationship of polyploid species provides an opportunity for a comprehensive study of gene introgression. Oil camellias refer to a class of important woody oil plant in the camellia genus, including octoploid, hexaploid, tetraploid, and diploid plants, but the phylogeny relationship of these species remains poorly investigated. Here, based on multiple types of evidence, including phylogenetic conflict, gene flow analysis, and representative metabolite, we reconstructed the phylogenetic relationship of oil camellias. Camellia shensiensis and C. grijsii formed a distinc

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11

Huttunen, S., L. Hedenäs, and M. S. Ignatov. "Phylogenetic position of Homalothecium laevisetum and relationship." Arctoa 27, no. 1 (2018): 91–103. http://dx.doi.org/10.15298/arctoa.27.09.

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12

Dosay-Akbulut, Mine. "The phylogenetic relationship within the genus Carcharhinus." Comptes Rendus Biologies 331, no. 7 (2008): 500–509. http://dx.doi.org/10.1016/j.crvi.2008.04.001.

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13

Putra, Erik Nanda, Abdul Razak, and Ramadhan Sumarmin. "Analisis Filogenetik Cyprinus carpio Ruang Lingkup Asia Timur Dan Eropa Berdasarkan Genom Mitokondria." Metamorfosa: Journal of Biological Sciences 8, no. 1 (2021): 166. http://dx.doi.org/10.24843/metamorfosa.2021.v08.i01.p18.

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Carp (Cyprinus carpio L.) is one of the oldest and most commercially cultivated freshwater fish in the World. However, there are still many undetermined phylogenetic relationships and the origins of common goldfish lineages, which are an obstacle to the conservation and genetic reproduction of this species. In the process of phylogenetic analysis, researchers used mitochondrial genomes where the genomic DNA was obtained from homozygous double haploid clonal lines from domesticated Songpu strains, and the total genomic DNA was extracted and sequenced using next-generation sequencing technology.

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Means, Jackson C., and Paul E. Marek. "Is geography an accurate predictor of evolutionary history in the millipede family Xystodesmidae?" PeerJ 5 (October 12, 2017): e3854. http://dx.doi.org/10.7717/peerj.3854.

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For the past several centuries, millipede taxonomists have used the morphology of male copulatory structures (modified legs called gonopods), which are strongly variable and suggestive of species-level differences, as a source to understand taxon relationships. Millipedes in the family Xystodesmidae are blind, dispersal-limited and have narrow habitat requirements. Therefore, geographical proximity may instead be a better predictor of evolutionary relationship than morphology, especially since gonopodal anatomy is extremely divergent and similarities may be masked by evolutionary convergence.

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15

Zhao, Chenjing, Mengting Huang, Ding Yang, and Xingyue Liu. "Comparative Morphology of the Wing Base Structure Illuminates Higher-Level Phylogeny of Holometabola." Insects 15, no. 3 (2024): 199. http://dx.doi.org/10.3390/insects15030199.

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Phylogenetic relationships among Holometabola have been the subject of controversy. The value of the wing base structure in phylogenetic analysis has been demonstrated but remains largely underexplored and scarce in studies of Holometabola. We studied the phylogenetic relationships among Holometabola (excluding Siphonaptera), focusing exclusively on wing base structure. Cladistic assessments were conducted using 53 morphological data points derived from the bases of both the forewing and hindwing. The results of wing base data revealed a sister relationship between Hymenoptera and remaining or

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16

Xia, Xuhua. "Phylogenetic Relationship Among Horseshoe Crab Species: Effect of Substitution Models on Phylogenetic Analyses." Systematic Biology 49, no. 1 (2000): 87–100. http://dx.doi.org/10.1080/10635150050207401.

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17

Thakur, Rabindra, Takashi Shiratori, and Ken-ichiro Ishida. "Taxon-rich Multigene Phylogenetic Analyses Resolve the Phylogenetic Relationship Among Deep-branching Stramenopiles." Protist 170, no. 5 (2019): 125682. http://dx.doi.org/10.1016/j.protis.2019.125682.

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18

Polyakov, Vladimir N., Elena A. Makarova, and Valery D. Solovyev. "Phylogenetic trees: Grammar versus vocabulary." Russian Journal of Linguistics 26, no. 1 (2022): 31–50. http://dx.doi.org/10.22363/2687-0088-26460.

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Traditionally, genealogical relationships between languages are established on the basis of phonetic and lexical data. The question whether genealogical relationships among languages can be defined based on grammatical data remains unanswered. The objective of this article is to compare two phylogenetic trees: one built using the Automated Similarity Judgment Program (ASJP) project, and one using the World Atlas of Language Structures (WALS). We include data from WALS representing 27 languages from 5 language families of all continents that are deemed to be sufficiently well described. A Hammi

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19

Safiullina, Asiya K., Dilrabo K. Ernazarova, Ozod S. Turaev, et al. "Genetic Diversity and Subspecific Races of Upland Cotton (Gossypium hirsutum L.)." Genes 15, no. 12 (2024): 1533. http://dx.doi.org/10.3390/genes15121533.

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Background/Objectives: The classification and phylogenetic relationships of Gossypium hirsutum L. landraces, despite their proximity to southern Mexico, remain unresolved. This study aimed to clarify these relationships using SSR markers and hybridization methods, focusing on subspecies and race differentiation within G. hirsutum L. Methods: Seventy polymorphic SSR markers (out of 177 tested) were used to analyze 141 alleles and calculate genetic distances among accessions. Phylogenetic relationships were determined using MEGA software (version 11.0.13) and visualized in a phylogenetic tree. A

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20

Sutrisno, Hari. "MOLECULAR PHYLOGENY OF INDONESIAN AGANAINE MOTHS (Lepidoptera: Noctuidae) BASED ON CO I GENE." Treubia 38 (April 27, 2015): 15–31. https://doi.org/10.14203/treubia.v38i0.544.

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Systematic of Aganaine moths has been long in dispute since they show both noctuids and arctiids morphological characteristics. Even the relationship among genera within Indonesian Aganaines is still unclear, and their phylogenetic relationships need to be reexamined since the morphological hypothesis proposed previously was not able to show the relationship among them. In order to clarify the phylogenetic relationship among five genera of Indonesian Aganaines, I used sequence of mitochondrial CO I gene (610-bp) to reconstruct their phylogenetic relationship using MP and NJ tree building metho

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Ballot, Andreas, Pawan K. Dadheech, and Lothar Krienitz. "Phylogenetic relationship of Arthrospira, Phormidium and Spirulina strains from Kenyan and Indian waterbodies." Algological Studies/Archiv für Hydrobiologie, Supplement Volumes 113 (August 1, 2004): 37–56. http://dx.doi.org/10.1127/1864-1318/2004/0113-0037.

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22

Rice, Nathan H. "Phylogenetic Relationships of Antpitta Genera (Passeriformes: Formicariidae)." Auk 122, no. 2 (2005): 673–83. http://dx.doi.org/10.1093/auk/122.2.673.

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Abstract Phylogenetic relationships among the antpitta genera were studied using DNA sequence data from the mitochondrial genome. The clade representing the traditional “antpitta” genera (Grallaria, Grallaricula, Hylopezus, Myrmothera, and Pittasoma) was found to be paraphyletic, owing to the sister relationship of Pittasoma and Conopophaga. In a previously unreported relationship, Pittasoma was strongly supported as the sister genus to Conopophaga (Conopophagidae). The remaining antpitta genera form a fully resolved and well-supported monophyletic lineage with two major subclades. The first c

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23

DeBlasio, Dan F., and Jennifer H. Wisecaver. "SICLE: a high-throughput tool for extracting evolutionary relationships from phylogenetic trees." PeerJ 4 (August 23, 2016): e2359. http://dx.doi.org/10.7717/peerj.2359.

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We present the phylogeny analysis softwareSICLE(SisterCladeExtractor), an easy-to-use, high-throughput tool to describe the nearest neighbors to a node of interest in a phylogenetic tree as well as the support value for the relationship. The application is a command line utility that can be embedded into a phylogenetic analysis pipeline or can be used as a subroutine within another C++ program. As a test case, we applied this new tool to the published phylome ofSalinibacter ruber, a species of halophilic Bacteriodetes, identifying 13 unique sister relationships toS. ruberacross the 4,589 gene

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24

Li, Zizhen, Qing Tian, Peifang Chong, Weibo Du, Jia Wei, and Rong Huang. "Phylogenetic Partitioning of Gansu Flora: Unveiling the Core Transitional Zone of Chinese Flora." Plants 12, no. 17 (2023): 3060. http://dx.doi.org/10.3390/plants12173060.

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Floristic regions, conventionally established using species distribution patterns, have often overlooked the phylogenetic relationships among taxa. However, how phylogenetic relationships influence the historical interconnections within and among biogeographic regions remains inadequately understood. In this research, we compiled distribution data for seed plants in Gansu, a region of significant biogeographic diversity located in northwestern China.We proposed a novel framework for floristic regions within Gansu, integrating distribution data and phylogenetic relationships of genera-level nat

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25

Li, Jun, Deng-Feng Xie, Xian-Lin Guo, Zhen-Ying Zheng, Xing-Jin He, and Song-Dong Zhou. "Comparative Analysis of the Complete Plastid Genome of Five Bupleurum Species and New Insights into DNA Barcoding and Phylogenetic Relationship." Plants 9, no. 4 (2020): 543. http://dx.doi.org/10.3390/plants9040543.

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Bupleurum L. (Apiaceae) is a perennial and herbal genus, most species of which have high medicinal value. However, few studies have been performed using plastome data in this genus, and the phylogenetic relationships have always been controversial. In this study, the plastid genomes of Bupleurum chinense and Bupleurum commelynoideum were sequenced, and their gene content, order, and structure were counted and analyzed. The only three published Bupleurum species (B. boissieuanum, B. falcatum, and B. latissimum) and other fifteen allied species were selected to conduct a series of comparative an

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26

Chen, Huimin, Yaqin Chen, Zhenqi Wang, Dawei Wu, Pan Chen, and Yanhong Chen. "The Complete Mitochondrial Genome of the Siberian Scoter Melanitta stejnegeri and Its Phylogenetic Relationship in Anseriformes." International Journal of Molecular Sciences 25, no. 18 (2024): 10181. http://dx.doi.org/10.3390/ijms251810181.

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The Siberian Scoter (Melanitta stejnegeri) is a medium sea duck distinct from M. deglandi due to the absence of hybridization and differences in morphological characteristics. However, knowledge of its phylogenetic relationships within Anseriformes is limited due to a lack of molecular data. In this study, the complete mitogenome of M. stejnegeri was firstly sequenced, then annotated and used to reconstruct the phylogenetic relationships of 76 Anseriformes species. The complete mitogenome of M. stejnegeri is 16,631 bp and encodes 37 typical genes: 13 protein-coding genes, 2 ribosomal RNAs, 22

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27

Mondal, A., G. P. Ghosh ., and M. I. Zuberi . "Phylogenetic Relationship of Different Kakrol Collections of Bangladesh." Pakistan Journal of Biological Sciences 9, no. 8 (2006): 1516–24. http://dx.doi.org/10.3923/pjbs.2006.1516.1524.

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28

LEE, MICHAEL S. Y., and PAUL DOUGHTY. "THE RELATIONSHIP BETWEEN EVOLUTIONARY THEORY AND PHYLOGENETIC ANALYSIS." Biological Reviews 72, no. 4 (2007): 471–95. http://dx.doi.org/10.1111/j.1469-185x.1997.tb00021.x.

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29

Lassnig, Caroline, M. Dorsch, J. Wolters, Eva Schaber, G. StÃ¶ffler, and E. Stackebrandt. "Phylogenetic evidence for the relationship between the generaMobiluncusandActinomyces." FEMS Microbiology Letters 65, no. 1-2 (1989): 17–21. http://dx.doi.org/10.1111/j.1574-6968.1989.tb03590.x.

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30

LEE, MICHAEL S. Y., and PAUL DOUGHTY. "THE RELATIONSHIP BETWEEN EVOLUTIONARY THEORY AND PHYLOGENETIC ANALYSIS." Biological Reviews of the Cambridge Philosophical Society 72, no. 4 (1997): 471–95. http://dx.doi.org/10.1017/s0006323197005070.

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31

Rozwandowicz, Marta, Joost Hordijk, Alex Bossers, et al. "Incompatibility and phylogenetic relationship of I-complex plasmids." Plasmid 109 (May 2020): 102502. http://dx.doi.org/10.1016/j.plasmid.2020.102502.

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32

FORSTER, MALCOLM R. "STATISTICAL COVARIANCE AS A MEASURE OF PHYLOGENETIC RELATIONSHIP." Cladistics 2, no. 3 (1986): 297–317. http://dx.doi.org/10.1111/j.1096-0031.1986.tb00454.x.

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33

Goo, Tae Won, Eun Young Yun, Jae-Sam Hwang, Seok-Woo Kang, Kwan-Hee You, and O.-Yu Kwon. "Phylogenetic Relationship of Bombyx mori Protein Disulfide Isomerase." Zeitschrift für Naturforschung C 57, no. 1-2 (2002): 189–96. http://dx.doi.org/10.1515/znc-2002-1-231.

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A cDNA that encodes protein disulfide isomerase was isolated from Bombyx mori (bPDI), in which an open reading frame of 494 amino acids contained two PDI-typical thioredoxin active sites of WCGHCK and an ER retention signal of the KDEL motif at its C-terminal. The bPDI protein shared less than 55% of the amino acid sequence homology with other reported PDIs. bPDI is most genetically similar to the D. melanogaster PDI. The most serious evolutional diversity was observed between the metazoa and nematoda through PDI evolutional processing. Although bPDI shows a relatively low amino acid homology

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34

WHITNEY, A. M., and S. P. O'CONNOR. "Phylogenetic Relationship of Gemella morbillorum to Gemella haemolysans." International Journal of Systematic Bacteriology 43, no. 4 (1993): 832–38. http://dx.doi.org/10.1099/00207713-43-4-832.

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35

Rahardi, Brian, Estri Laras Arumningtyas, and Wayan Firdaus Mahmudi. "Constructing Phenetic and Phylogenetic Relationship Using Clad'97." Journal of Tropical Life Science 2, no. 1 (2012): 15–20. http://dx.doi.org/10.11594/jtls.02.01.04.

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36

MONTES DE OCA-JIMENEZ, Roberto, Vicente VEGA-SANCHEZ, Vladimir MORALES-ERASTO, Celene SALGADO-MIRANDA, Patrick J. BLACKALL, and Edgardo SORIANO-VARGAS. "Phylogenetic relationship of Ornithobacterium rhinotracheale strains." Journal of Veterinary Medical Science 80, no. 6 (2018): 869–73. http://dx.doi.org/10.1292/jvms.17-0474.

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37

TSUNODA, Kenji. "Phylogenetic relationship between Asian and European sheep breeds." Japanese Journal of Sheep Science 2011, no. 48 (2011): 13–19. http://dx.doi.org/10.11595/jpnjsheepsci.2011.48_13.

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38

Keskin, Emre, Hasan Huseyin Atar, and Alp Can. "Phylogenetic relationship among mullidae species in Turkish ichthyofauna." Journal of Biotechnology 136 (October 2008): S542. http://dx.doi.org/10.1016/j.jbiotec.2008.07.1273.

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Monika, Karnawat, and P. Malik C. "Phylogenetic relationship between Argemone mexicana and A. ochroleuca." International Journal of Current Pharmaceutical Review and Research 1, no. 3 (2011): 17–25. https://doi.org/10.5281/zenodo.12699736.

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Combined data based on morphology, cytology, cross ability and interspecific fertility aresecured in Argemone mexicana and A,ochroleuca ssp ochroleuca and A.ochroleuca sspstenopetla with an intent to understand their relationship. Distinct differences between thetwo species merit their separate species status. Argemone mexican is diploid with 14bivalents and normal meiotic behavior whereas A.ochroleuca ssp. ochroleuca and A.ochroleuca ssp stenopetla ssp had 28 bivalents. 

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Dembo, Mana, Nicholas J. Matzke, Arne Ø. Mooers, and Mark Collard. "Bayesian analysis of a morphological supermatrix sheds light on controversial fossil hominin relationships." Proceedings of the Royal Society B: Biological Sciences 282, no. 1812 (2015): 20150943. http://dx.doi.org/10.1098/rspb.2015.0943.

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The phylogenetic relationships of several hominin species remain controversial. Two methodological issues contribute to the uncertainty—use of partial, inconsistent datasets and reliance on phylogenetic methods that are ill-suited to testing competing hypotheses. Here, we report a study designed to overcome these issues. We first compiled a supermatrix of craniodental characters for all widely accepted hominin species. We then took advantage of recently developed Bayesian methods for building trees of serially sampled tips to test among hypotheses that have been put forward in three of the mos

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Yu, Tinghao, and Yalin Zhang. "Two Complete Mitochondrial Genomes of Mileewinae (Hemiptera: Cicadellidae) and a Phylogenetic Analysis." Insects 12, no. 8 (2021): 668. http://dx.doi.org/10.3390/insects12080668.

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More studies are using mitochondrial genomes of insects to explore the sequence variability, evolutionary traits, monophyly of groups and phylogenetic relationships. Controversies remain on the classification of the Mileewinae and the phylogenetic relationships between Mileewinae and other subfamilies remain ambiguous. In this study, we present two newly completed mitogenomes of Mileewinae (Mileewa rufivena Cai and Kuoh 1997 and Ujna puerana Yang and Meng 2010) and conduct comparative mitogenomic analyses based on several different factors. These species have quite similar features, including

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Priyanka, Shaktawat, and Bhurani Parvati. "A Review: Phylogeny Construction Methods." International Journal of Emerging Science and Engineering (IJESE) 6, no. 5 (2019): 1–4. https://doi.org/10.35940/ijese.E2283.078219.

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In bioinformatics, the phylogenetics is the study of evolutionary pathway that gives the relationship between various organisms. Phylogenetics act as an important tool of bioinformatics as it handle huge biological data in the form of evolutionary trees. This relationship can be inferred on the basis of the heritable traits such as nucleotide or protein sequences. The phylogenetic tree can be constructed using different methods: WPGMA, UPGMA, neighbor joining, maximum parsimony or etc. Phylogeny has become the central part of bioinformatics and can be used in different fields to solve their re

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Liu, Wenbin, Chengyan Wang, Jingyuan Wang, et al. "Phylogenetic and Comparative Analysis of Cryptochironomus, Demicryptochironomus and Harnischia Inferred from Mitogenomes (Diptera: Chironomidae)." Insects 15, no. 9 (2024): 642. http://dx.doi.org/10.3390/insects15090642.

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(1) Background: Mitochondrial genomes have been extensively employed as a crucial marker in numerous dipteran families for understanding phylogenetics and systematics relations, thereby playing a pivotal role in molecular biology studies. The phylogenetic relationship of the Harnischia generic complex remains contentious due to the paucity of taxonomic and molecular data. Specifically, the evolutionary relationships among Cryptochironomus, Demicryptochironomus, and Harnischia are still unclear. (2) Methods: In this study, Polypedilum and Endochironomus were used as outgroups to analyze phyloge

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Zhang, Xixi, Zhihuang Zhu, Jianxin Wang, Ge Shi, and Qi Lin. "Mitogenomic and Phylogenetic Analyses of Lysmata lipkei (Crustacea: Decapoda: Lysmatidae)." Fishes 10, no. 4 (2025): 177. https://doi.org/10.3390/fishes10040177.

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This study aims to elucidate the characteristics of the mitogenome of Lysmata lipkei and investigate its phylogenetic relationships. Using both the Illumina NovaSeq 6000 (Illumina, Inc., San Diego, CA, USA) and PacBio Sequel II (Pacific Biosciences of California, Inc., Menlo Park, CA, USA) platforms, the complete mitogenome sequence of L. lipkei was determined. The mitogenome of L. lipkei was annotated, measuring 17,497 bp in length and comprising 13 protein-coding genes (PCGs), 2 ribosomal RNA genes (rRNAs), and 22 transfer RNA genes (tRNAs). The nucleotide composition of the genome exhibited

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Al-Musawi, Hayfaa, Amani Al-Abdullah, and Labeed Al-Saad. "Identification of Phylogenetic Groups and Antibiotic Resistance in Escherichia coli Isolated from Urinary Tract Infections in Basrah, Iraq." Medical Journal of Babylon 22, no. 1 (2025): 168–74. https://doi.org/10.4103/mjbl.mjbl_1101_23.

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Abstract Background: Escherichia coli is the most common causal agent for urinary tract infections (UTIs), but several other bacteria can also cause UTIs. Phylogenetic classification is essential for understanding E. coli groups as well as the relationships between different strains. Objectives: The aim of the study was to identify phylogenetic groups and antibiotic resistance in uropathogenic E. coli. Materials and Methods: A study was done on patients with UTIs during the period from March 1, 2021, to the end of June 2021, and 57 E. coli isolates were included in the study. Analyzed for phyl

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Blanke, Alexander, Peter J. Watson, Richard Holbrey, and Michael J. Fagan. "Computational biomechanics changes our view on insect head evolution." Proceedings of the Royal Society B: Biological Sciences 284, no. 1848 (2017): 20162412. http://dx.doi.org/10.1098/rspb.2016.2412.

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Despite large-scale molecular attempts, the relationships of the basal winged insect lineages dragonflies, mayflies and neopterans, are still unresolved. Other data sources, such as morphology, suffer from unclear functional dependencies of the structures considered, which might mislead phylogenetic inference. Here, we assess this problem by combining for the first time biomechanics with phylogenetics using two advanced engineering techniques, multibody dynamics analysis and finite-element analysis, to objectively identify functional linkages in insect head structures which have been used trad

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XINAGHUI, Yang, Li PING, Lin SHUNQUAN, Hu GUIBIN, and He XIAOLONG. "A Preliminarily Phylogeny Study of the Eriobotrya Based on the nrDNA Adh Sequences." Notulae Botanicae Horti Agrobotanici Cluj-Napoca 40, no. 2 (2012): 233. http://dx.doi.org/10.15835/nbha4027997.

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Phylogenetic relationships of the genus Eriobotrya Lindl. were examined based on the nrDNA Adh sequences. A phylogenetic tree of 14 loquat accessions (species, varieties and forma) was generated by using Photinieae serrulaia L. as an outgroup and Rhaphiolepis indica (L.) Lindl. as an ingroup, which represent the two closest genera of Eriobotyra. The results showed that these loquat accessions were divided into two main clades in the consensus tree. Clade I included E. seguinii Card and group A formed by E. henryi Nakai, E.bengalensis Hook.f., and forma angustifolia Vidal. Clade II is composed

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Saeed, Muhammad Azeem, Abdul Haque, Aamir Ali, et al. "Relationship of drug resistance to phylogenetic groups of E. coli isolates from wound infections." Journal of Infection in Developing Countries 3, no. 09 (2009): 667–70. http://dx.doi.org/10.3855/jidc.66.

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Background: Drug resistance is a major problem in Escherichia coli isolated from surgical wound infections. In this study, we evaluated relationship between phylogenicity and drug resistance. Methodology: A total of 29 multi-drug resistant (MDR) E. coli isolates of known drug resistance genes and integron profile were selected for the present study. Triplex PCR was conducted for phylogenetic classification of these isolates into four established phylogenetic groups: A, B1, B2 and D. Statistical analysis was done to determine the association of different drug resistance genes and integrons with

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Crins, William J. "Phylogenetic considerations below the sectional level in Carex." Canadian Journal of Botany 68, no. 7 (1990): 1433–40. http://dx.doi.org/10.1139/b90-181.

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Few estimates of phylogenetic relationship below the sectional level have been proposed within the genus Carex (Cyperaceae). The reasons for this include (1) poorly circumscribed sections (paraphyletic and polyphyletic), (2) uncertain relationships among sections, and (3) difficulty in objectively assessing character state polarities. The operational difficulties posed by points 2 and 3 can be overcome through the use of character compatibility analysis, if it can be demonstrated that the section under study is monophyletic (point 1). This technique enables the investigator to generate hypothe

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Lu, Xiaozhen, Jikai Lu, Yunfei Wu, Meishu Guo, Guy Smagghe, and Renhuai Dai. "Phylogenetic relationship analysis of leafhopper subfamily Iassinae (Hemiptera: Cicadellidae) based on low-coverage whole-genome data." Arthropod Systematics & Phylogeny 83 (February 25, 2025): 31–41. https://doi.org/10.3897/asp.83.e142332.

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Iassinae, a widely distributed group of herbivorous pest insects, is a subfamily of Cicadellidae. Previous studies on the phylogeny of Iassinae were mostly based on morphological characteristics, mitochondrial genomes, and molecular fragments (H3, 28S, and 12S), and their phylogenetic relationships were controversial. To better understand Iassinae, we analyzed the phylogenetic relationships among four genera in Iassinae with use of thousands of universal single-copy orthologs and ultraconserved elements extracted from 25 newly sequenced low-coverage whole genome data. Both marker sets provided

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