Relevant bibliographies by topics / Phylogeny

Contents

  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers
  6. Reports

Academic literature on the topic 'Phylogeny'

Author: Grafiati
Published: 4 June 2021
Last updated: 25 July 2025

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Journal articles on the topic "Phylogeny"

1

McKinney, Michael L. "Extinction in Phylogeny, or Phylogeny in Extinction?" Ecology 74, no. 6 (1993): 1906–7. http://dx.doi.org/10.2307/1939951.

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SMITH, A. B. "Fossils in Phylogeny: Phylogeny Reconstruction in Paleontology." Science 235, no. 4789 (1987): 696. http://dx.doi.org/10.1126/science.235.4789.696.

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SAARMA, U., I. JÕGISALU, E. MOKS, et al. "A novel phylogeny for the genus Echinococcus, based on nuclear data, challenges relationships based on mitochondrial evidence." Parasitology 136, no. 3 (2009): 317–28. http://dx.doi.org/10.1017/s0031182008005453.

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SUMMARYThe taxonomic status of Echinococcus, an important zoonotic cestode genus, has remained controversial, despite numerous attempts to revise it. Although mitochondrial DNA (mtDNA) has been the source of markers of choice for reconstructing the phylogeny of the genus, results derived from mtDNA have led to significant inconsistencies with earlier species classifications based on phenotypic analysis. Here, we used nuclear DNA markers to test the phylogenic relationships of members of the genus Echinococcus. The analysis of sequence data for 5 nuclear genes revealed a significantly different
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Hubu, Herlin S., Stenly Wullur, Veibe Warouw, Elvy L. Ginting, Robert A. Bara, and Adnan S. Wantasen. "FILOGENI MOLEKULER BAKTERI DARI MEDIA PEMELIHARAAN ROTIFER YANG DIBERI OLAHAN LIMBAH IKAN SEBAGAI SUMBER NUTRISI." JURNAL PESISIR DAN LAUT TROPIS 9, no. 1 (2021): 38. http://dx.doi.org/10.35800/jplt.9.1.2021.33574.

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This study aims to identify and construct molecular phylogeny of an isolate bacteria from culture media of rotifer Brachionus rotudiforis supplied with processed fishery waste feed as nutritional source. The use of fish waste-based food for rotifer showed positive effects on growth and nutrient content of the rotifers. Genomic DNA of the isolate bacteria BRLI- 01 was extracted and the 16S rRNA gene was amplified using primers (8F and 1492F) and further sequenced using Sanger sequence technique. The 16S rRNA gene was analysed using SeqScanner® and MEGA® followed with BLAST (Basic Local Alignmen
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López, J. Andrés, Wei-Jen Chen, and Guillermo Ortí. "Esociform Phylogeny." Copeia 2004, no. 3 (2004): 449–64. http://dx.doi.org/10.1643/cg-03-087r1.

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Burgess, George H., and Shigeru Shirai. "Squalean Phylogeny." Copeia 1993, no. 4 (1993): 1203. http://dx.doi.org/10.2307/1447121.

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Rougler, Guillermo W., John R. Wible, and Michael J. Novacek. "Multituberculate phylogeny." Nature 379, no. 6564 (1996): 406. http://dx.doi.org/10.1038/379406a0.

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Sereno, Paul C., and Malcolm C. McKenna. "Multituberculate phylogeny." Nature 379, no. 6564 (1996): 406–7. http://dx.doi.org/10.1038/379406b0.

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Meng, Jin, and Andre R. Wyss. "Multituberculate phylogeny." Nature 379, no. 6564 (1996): 407. http://dx.doi.org/10.1038/379407a0.

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Telles, Guilherme P., Nalvo F. Almeida, Rosane Minghim, and Maria Emilia M. T. Walter. "Live Phylogeny." Journal of Computational Biology 20, no. 1 (2013): 30–37. http://dx.doi.org/10.1089/cmb.2012.0219.

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Dissertations / Theses on the topic "Phylogeny"

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Bernt, Matthias. "Gene order rearrangement methods for the reconstruction of phylogeny." Doctoral thesis, Universitätsbibliothek Leipzig, 2010. http://nbn-resolving.de/urn:nbn:de:bsz:15-qucosa-38666.

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The study of phylogeny, i.e. the evolutionary history of species, is a central problem in biology and a key for understanding characteristics of contemporary species. Many problems in this area can be formulated as combinatorial optimisation problems which makes it particularly interesting for computer scientists. The reconstruction of the phylogeny of species can be based on various kinds of data, e.g. morphological properties or characteristics of the genetic information of the species. Maximum parsimony is a popular and widely used method for phylogenetic reconstruction aiming for an explan
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Varón, González Ceferino. "Shape and phylogeny." Thesis, University of Manchester, 2014. https://www.research.manchester.ac.uk/portal/en/theses/shape-and-phylogeny(f432d494-9755-41f9-b067-431023ad3248).html.

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Geometric morphometrics, the science about the study of shape, has developed much in the last twenty years. In this thesis I first study the reliability of the phylogenies built using geometric morphometrics. The effect of different evolutionary models, branch-length combinations, dimensionality and degrees of integration is explored using computer simulations. Unfortunately in the most common situations (presence of stabilizing selection, short distance between internal nodes and presence of integration) the reliability of the phylogenies is very low. Different empirical studies are analysed
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Poe, Stephen Joseph. "Phylogeny of anoles /." Full text (PDF) from UMI/Dissertation Abstracts International, 2000. http://wwwlib.umi.com/cr/utexas/fullcit?p3004359.

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Jacobson, Herbert R. "Generic revision, phylogenic classification, and phylogeny of the termitophilous tribe corotocini(Coleoptera; staphylinidae)." Doctoral thesis, Universite Libre de Bruxelles, 1985. http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/213647.

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Garcia, Marcelo. "A mitochondrial metazoan phylogeny." Laboratório Nacional de Computação Científica, 2007. http://www.lncc.br/tdmc/tde_busca/arquivo.php?codArquivo=136.

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Discernir as relações evolutivas entre os grandes grupos animais tem representado um formidável desafio para a Ciência. Os filos animais possuem arquiteturas corporais bastante distintas e por isso difíceis de serem comparadas. Ao mesmo tempo, seu registro fóssil converge aproximadamente para um mesmo intervalo na escala geológica, dificultando uma reconstrução filogenética com caracteres morfológicos. A disponibilidade de dados moleculares sobre os organismos abriu, contudo, novas possibilidades na filogenia animal. Esta dissertação buscou explorar essas possibilidades inferindo uma filogeni
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Boussau, Bastien. "Early evolution and phylogeny." Lyon 1, 2008. http://tel.archives-ouvertes.fr/docs/00/34/57/43/PDF/These_03122008.pdf.

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Durant cette thèse je me suis intéressé à l'évolution profonde du vivant, depuis le dernier ancêtre commun universel (LUCA) jusqu'aux ancêtres des trois grands royaumes, les Archées, les Bactéries et les Eucaryotes. J'ai notamment cherché à placer quelques organismes dans l'arbre de la vie, tels que la bactérie Aquifex aeolicus et l'archée Cenarchaeum symbiosum, et j'ai également étudié l'évolution des températures de croissance il y a plusieurs milliards d'années. Pour ce faire, j'ai développé des algorithmes a n de reconstruire l'évolution de séquences géniques, puis j'ai utilisé ces séquenc
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Ranghoo, Vijayanti Mala. "Phylogeny of freshwater ascomycetes." Thesis, Hong Kong : University of Hong Kong, 1998. http://sunzi.lib.hku.hk/hkuto/record.jsp?B20793042.

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Kolaczkowski, Bryan. "Deconstructing phylogenetic reconstruction : effects of assumption violations on evolutionary inference /." view abstract or download file of text, 2006. http://proquest.umi.com/pqdweb?did=1280150641&sid=1&Fmt=2&clientId=11238&RQT=309&VName=PQD.

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Thesis (Ph. D.)--University of Oregon, 2006.<br>Typescript. Includes vita and abstract. Includes bibliographical references (leaves 137-144). Also available for download via the World Wide Web; free to University of Oregon users.
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Schulze, Anja. "Phylogeny of vestimentiferan tube worms." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 2000. http://www.collectionscanada.ca/obj/s4/f2/dsk1/tape2/PQDD_0009/NQ52771.pdf.

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Jones, Martin. "Multigene datasets for deep phylogeny." Thesis, University of Edinburgh, 2007. http://hdl.handle.net/1842/2575.

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Though molecular phylogenetics has been very successful in reconstructing the evolutionary history of species, some phylogenies, particularly those involving ancient events, have proven difficult to resolve. One approach to improving the resolution of deep phylogenies is to increase the amount of data by including multiple genes assembled from public sequence databases. Using modern phylogenetic methods and abundant computing power, the vast amount of sequence data available in public databases can be brought to bear on difficult phylogenetic problems. In this thesis I outline the motivation f
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Books on the topic "Phylogeny"

1

Steel, Mike. Phylogeny. Society for Industrial and Applied Mathematics, 2016. http://dx.doi.org/10.1137/1.9781611974485.

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Szalay, Frederick S., Michael J. Novacek, and Malcolm C. McKenna, eds. Mammal Phylogeny. Springer New York, 1993. http://dx.doi.org/10.1007/978-1-4615-7381-4.

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Szalay, Frederick S., Michael J. Novacek, and Malcolm C. McKenna, eds. Mammal Phylogeny. Springer New York, 1993. http://dx.doi.org/10.1007/978-1-4613-9246-0.

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Szalay, Frederick S., Michael J. Novacek, and Malcolm C. McKenna, eds. Mammal Phylogeny. Springer New York, 1993. http://dx.doi.org/10.1007/978-1-4613-9249-1.

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S, Szalay Frederick, Novacek Michael J, McKenna Malcolm C, and North Atlantic Treaty Organization, eds. Mammal phylogeny. Springer-Verlag, 1993.

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J, Novacek Michael, and Wheeler Quentin 1954-, eds. Extinction and phylogeny. Columbia University Press, 1992.

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Gould, Stephen Jay. Ontogeny and phylogeny. Harvard University Press, 1985.

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1967-, Purvis Andy, Gittleman John L, and Brooks Thomas, eds. Phylogeny and conservation. Cambridge University Press, 2005.

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Forey, Peter L., and Norman MacLeod. Morphology, shape and phylogeny. Taylor & Francis, 2002.

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Flanagan, Kathryn M., and Jason A. Lillegraven, eds. Vertebrates, Phylogeny, and Philosophy. University of Wyoming, 1986. http://dx.doi.org/10.2113/gsrocky.24.special_paper_3.1.

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Book chapters on the topic "Phylogeny"

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Frank, J. Howard, J. Howard Frank, Michael C. Thomas, et al. "Phylogeny." In Encyclopedia of Entomology. Springer Netherlands, 2008. http://dx.doi.org/10.1007/978-1-4020-6359-6_2936.

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Moreira, David. "Phylogeny." In Encyclopedia of Astrobiology. Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-11274-4_1209.

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Kovář, I. "Phylogeny." In Ecology of Coccinellidae. Springer Netherlands, 1996. http://dx.doi.org/10.1007/978-94-017-1349-8_2.

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Prado, José Luis, and María Teresa Alberdi. "Phylogeny." In The Latin American Studies Book Series. Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-55877-6_4.

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Lichtwardt, Robert W. "Phylogeny." In The Trichomycetes. Springer New York, 1986. http://dx.doi.org/10.1007/978-1-4612-4890-3_12.

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Moreira, David. "Phylogeny." In Encyclopedia of Astrobiology. Springer Berlin Heidelberg, 2015. http://dx.doi.org/10.1007/978-3-662-44185-5_1209.

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Mackenstedt, Ute. "Phylogeny." In Encyclopedia of Parasitology. Springer Berlin Heidelberg, 2016. http://dx.doi.org/10.1007/978-3-662-43978-4_2423.

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Saitou, Naruya. "Phylogeny." In Introduction to Evolutionary Genomics. Springer International Publishing, 2018. http://dx.doi.org/10.1007/978-3-319-92642-1_4.

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Moreira, David. "Phylogeny." In Encyclopedia of Astrobiology. Springer Berlin Heidelberg, 2023. http://dx.doi.org/10.1007/978-3-662-65093-6_1209.

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Saitou, Naruya. "Phylogeny." In Introduction to Evolutionary Genomics. Springer London, 2013. http://dx.doi.org/10.1007/978-1-4471-5304-7_3.

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Conference papers on the topic "Phylogeny"

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Faisal, Fahim, and Antonios Anastasopoulos. "Phylogeny-Inspired Adaptation of Multilingual Models to New Languages." In Proceedings of the 2nd Conference of the Asia-Pacific Chapter of the Association for Computational Linguistics and the 12th International Joint Conference on Natural Language Processing (Volume 1: Long Papers). Association for Computational Linguistics, 2022. http://dx.doi.org/10.18653/v1/2022.aacl-main.34.

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Gusfield, Dan. "Persistent phylogeny." In BCB '15: ACM International Conference on Bioinformatics, Computational Biology and Biomedicine. ACM, 2015. http://dx.doi.org/10.1145/2808719.2808765.

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Bonizzoni, Paola, Simone Ciccolella, Gianluca Della Vedova, and Mauricio Soto. "Beyond Perfect Phylogeny." In BCB '17: 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. ACM, 2017. http://dx.doi.org/10.1145/3107411.3107441.

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Rogers, John, and DeAngelo Wilson. "Comparing phylogeny by compression to phylogeny by NJp and Bayesian Inference." In 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2020. http://dx.doi.org/10.1109/bibm49941.2020.9313237.

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Araújo, Graziela S., Guilherme P. Telles, Maria Emília M. T. Walter, and Nalvo F. Almeida. "Distance-based Live Phylogeny." In 8th International Conference on Bioinformatics Models, Methods and Algorithms. SCITEPRESS - Science and Technology Publications, 2017. http://dx.doi.org/10.5220/0006224501960201.

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Gusfield, Dan. "Haplotyping as perfect phylogeny." In the sixth annual international conference. ACM Press, 2002. http://dx.doi.org/10.1145/565196.565218.

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Jones, Jeff A., and Katherine A. Yelick. "Parallelizing the phylogeny problem." In the 1995 ACM/IEEE conference. ACM Press, 1995. http://dx.doi.org/10.1145/224170.224224.

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Narayan, Kartik, Harsh Agarwal, Kartik Thakral, Surbhi Mittal, Mayank Vatsa, and Richa Singh. "DeePhy: On Deepfake Phylogeny." In 2022 IEEE International Joint Conference on Biometrics (IJCB). IEEE, 2022. http://dx.doi.org/10.1109/ijcb54206.2022.10007968.

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Sampaio, Alberto. "Software Phenetics, Phylogeny and Evolution." In Third International IEEE Workshop on Software Evolvability 2007. IEEE, 2007. http://dx.doi.org/10.1109/software-evolvability.2007.13.

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Baca, Stephen M. "Phylogeny and classification of Noteridae." In 2016 International Congress of Entomology. Entomological Society of America, 2016. http://dx.doi.org/10.1603/ice.2016.94124.

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Reports on the topic "Phylogeny"

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Tiffani L. Williams. High-Performance Phylogeny Reconstruction. Office of Scientific and Technical Information (OSTI), 2004. http://dx.doi.org/10.2172/834325.

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Moret, Bernard M., and Tandy Warnow. Advances in Phylogeny Reconstruction from Gene Order and Content Data. Defense Technical Information Center, 2004. http://dx.doi.org/10.21236/ada482523.

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Hutterer, R., Mark T. Swanson, Jacob A. Esselstyn, and Lawrence R. Heaney. Supplemental materials for 'The shrew of Nagaland : a remarkable new genus and species from northeast India, with a discussion of the phylogeny and classification of the Soricidae (Mammalia) (Bulletin of the American Museum of Natural History, no. 474)'. American Museum of Natural History, 2025. https://doi.org/10.5531/sd.sp.75.

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Supplemental materials for 'The shrew of Nagaland : a remarkable new genus and species from northeast India, with a discussion of the phylogeny and classification of the Soricidae (Mammalia) (Bulletin of the American Museum of Natural History, no. 474)' - https://hdl.handle.net/2246/7508
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Стригунов, Володимир Іванович, Іван Сергійович Митяй, and Олександр Володимирович Мацюра. Egg shape in the taxonomy and phylogeny of birds of prey. МДПУ імені Богдана Хмельницького, 2016. http://dx.doi.org/10.31812/0564/1510.

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Swinstrom, Kirsten, Roy Caldwell, H. Matthew Fourcade, and Jeffrey L. Boore. The First Complete Mitochondrial Genome Sequences for Stomatopod Crustaceans: Implications for Phylogeny. Office of Scientific and Technical Information (OSTI), 2005. http://dx.doi.org/10.2172/960399.

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Foster, Michael S. Support for a Symposium on Molecular Approaches to Phylogeny, Evolution and Biogeography. Defense Technical Information Center, 1992. http://dx.doi.org/10.21236/ada262112.

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Kalgutkar, R. M., and A. R. Sweet. Morphology, taxonomy and phylogeny of the fossil fungal genus Pesavis from northwestern Canada. Natural Resources Canada/ESS/Scientific and Technical Publishing Services, 1988. http://dx.doi.org/10.4095/126976.

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Ksepka, Daniel, and Kristin Lamm. Systematics and Biodiversity Conservation. American Museum of Natural History, 2012. http://dx.doi.org/10.5531/cbc.ncep.0024.

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This exercise uses a fictional group of turtles to demonstrate how to implement cladistic methodology. Using a step-by-step guide, students work to find the most parsimonious cladogram for these fictional turtles. Part I involves delineating characters and building a most parsimonious cladogram based on the distribution of character states, while Part II presents additional challenges by introducing homoplasy. This exercise is designed to familiarize students with the concepts of phylogeny and cladistics, expand their skills of phylogenetic analysis, and use phylogenetic information to determi
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Pandya, Gagan A., Michael H. Holmes, Jeannine M. Petersen, et al. Whole-Genome Single Nucleotide Polymorphism Based Phylogeny of Francisella tularensis and Its Application to the Development of a Strain Typing Assay. Defense Technical Information Center, 2009. http://dx.doi.org/10.21236/ada513240.

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Eiserhardt, Wolf. Molekularbiologische Untersuchungen zur Phylogenie der cheilanthoiden Farne (Pteridaceae-Cheilanthoideae) des südlichen Afrika. BEE-Press, 2007. http://dx.doi.org/10.7809/thesis.examen.001.

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