Relevant bibliographies by topics / Phylum Bathyarchaeota

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Academic literature on the topic 'Phylum Bathyarchaeota'

Author: Grafiati
Published: 4 June 2021
Last updated: 18 February 2022

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Journal articles on the topic "Phylum Bathyarchaeota"

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Evans, P. N., D. H. Parks, G. L. Chadwick, et al. "Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics." Science 350, no. 6259 (2015): 434–38. http://dx.doi.org/10.1126/science.aac7745.

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Berghuis, Bojk A., Feiqiao Brian Yu, Frederik Schulz, Paul C. Blainey, Tanja Woyke, and Stephen R. Quake. "Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens." Proceedings of the National Academy of Sciences 116, no. 11 (2019): 5037–44. http://dx.doi.org/10.1073/pnas.1815631116.

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Methanogenic archaea are major contributors to the global carbon cycle and were long thought to belong exclusively to the euryarchaeal phylum. Discovery of the methanogenesis gene cluster methyl-coenzyme M reductase (Mcr) in the Bathyarchaeota, and thereafter the Verstraetearchaeota, led to a paradigm shift, pushing back the evolutionary origin of methanogenesis to predate that of the Euryarchaeota. The methylotrophic methanogenesis found in the non-Euryarchaota distinguished itself from the predominantly hydrogenotrophic methanogens found in euryarchaeal orders as the former do not couple met
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Lv, Liu, Han, et al. "The Effect of Nitrogen Content on Archaeal Diversity in an Arctic Lake Region." Microorganisms 7, no. 11 (2019): 543. http://dx.doi.org/10.3390/microorganisms7110543.

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The function of Arctic soil ecosystems is crucially important for the global climate, and nitrogen (N) is the major limiting nutrient in these environments. This study assessed the effects of changes in nitrogen content on archaeal community diversity and composition in the Arctic lake area (London Island, Svalbard). A total of 16S rRNA genes were sequenced to investigate archaeal community composition. First, the soil samples and sediment samples were significantly different for the geochemical properties and archaeal community composition. Thaumarchaeota was an abundant phylum in the nine so
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Butterfield, Cristina N., Zhou Li, Peter F. Andeer, et al. "Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone." PeerJ 4 (November 8, 2016): e2687. http://dx.doi.org/10.7717/peerj.2687.

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Annually, half of all plant-derived carbon is added to soil where it is microbially respired to CO2. However, understanding of the microbiology of this process is limited because most culture-independent methods cannot link metabolic processes to the organisms present, and this link to causative agents is necessary to predict the results of perturbations on the system. We collected soil samples at two sub-root depths (10–20 cm and 30–40 cm) before and after a rainfall-driven nutrient perturbation event in a Northern California grassland that experiences a Mediterranean climate. From ten sample
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Zheng, Pengfei, Chuantao Wang, Xiaoli Zhang, and Jun Gong. "Community Structure and Abundance of Archaea in a Zostera marina Meadow: A Comparison between Seagrass-Colonized and Bare Sediment Sites." Archaea 2019 (November 18, 2019): 1–11. http://dx.doi.org/10.1155/2019/5108012.

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Seagrass colonization alters sediment physicochemical properties by depositing seagrass fibers and releasing organic carbon and oxygen from the roots. How this seagrass colonization-induced spatial heterogeneity affects archaeal community structure and abundance remains unclear. In this study, we investigated archaeal abundance, diversity, and composition in both vegetated and adjacent bare surface sediments of a Zostera marina meadow. High-throughput sequencing of 16S rDNA showed that Woesearchaeota, Bathyarchaeota, and Thaumarchaeota were the most abundant phyla across all samples, accountin
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Martino, Amanda, Matthew E. Rhodes, Rosa León-Zayas, Isabella E. Valente, Jennifer F. Biddle, and Christopher H. House. "Microbial Diversity in Sub-Seafloor Sediments from the Costa Rica Margin." Geosciences 9, no. 5 (2019): 218. http://dx.doi.org/10.3390/geosciences9050218.

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The exploration of the deep biosphere continues to reveal a great diversity of microorganisms, many of which remain poorly understood. This study provides a first look at the microbial community composition of the Costa Rica Margin sub-seafloor from two sites on the upper plate of the subduction zone, between the Cocos and Caribbean plates. Despite being in close geographical proximity, with similar lithologies, both sites show distinctions in the relative abundance of the archaeal domain and major microbial phyla, assessed using a pair of universal primers and supported by the sequencing of s
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Li, Cheng-Peng, Ya-Ping Li, Qing-Qing Huo, et al. "Comparison of Prokaryotic Communities Associated with Different TOC Concentrations in Dianchi Lake." Water 12, no. 9 (2020): 2557. http://dx.doi.org/10.3390/w12092557.

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The effect of total organic carbon (TOC) on the prokaryotic community structure in situ has been rarely known. This study aimed to determine the effect of TOC level on the composition and networks of archaeal and bacterial communities in the sediments of Dianchi Lake, one of the most eutrophic lakes in China. Microbial assemblages showed significantly associations with TOC. Moreover, relatively high and low TOC formed taxonomic differences in prokaryotic assemblages. According to the results, the most abundant bacteria across all samples were identified as members of the phyla Proteobacteria,
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Zhang, Xiaoke, Huili Wang, Zhifei Li, Jun Xie, and Jiajia Ni. "Hydrological and soil physiochemical variables determine the rhizospheric microbiota in subtropical lakeshore areas." PeerJ 8 (September 29, 2020): e10078. http://dx.doi.org/10.7717/peerj.10078.

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Background Due to intensive sluice construction and other human disturbances, lakeshore vegetation has been destroyed and ecosystems greatly changed. Rhizospheric microbiota constitute a key part of a functioning rhizosphere ecosystem. Maintaining rhizosphere microbial diversity is a central, critical issue for sustaining these rhizospheric microbiota functions and associated ecosystem services. However, the community composition and abiotic factors influencing rhizospheric microbiota in lakeshore remain largely understudied. Methods The spatiotemporal composition of lakeshore rhizospheric mic
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Yuan, Bo, Wei Wu, Mengjing Guo, Xiaode Zhou, and Shuguang Xie. "Spatial-temporal dynamics and influencing factors of archaeal communities in the sediments of Lancang River cascade reservoirs (LRCR), China." PLOS ONE 16, no. 6 (2021): e0253233. http://dx.doi.org/10.1371/journal.pone.0253233.

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The spatial and temporal distribution of the archaeal community and its driving factors in the sediments of large-scale regulated rivers, especially in rivers with cascade hydropower development rivers, remain poorly understood. Quantitative PCR (qPCR) and Illumina MiSeq sequencing of the 16S rRNA archaeal gene were used to comprehensively investigate the spatiotemporal diversity and structure of archaeal community in the sediments of the Lancang River cascade reservoirs (LRCR). The archaeal abundance ranged from 5.11×104 to 1.03×106 16S rRNA gene copies per gram dry sediment and presented no
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Hervé, Vincent, Pengfei Liu, Carsten Dietrich, et al. "Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites." PeerJ 8 (February 13, 2020): e8614. http://dx.doi.org/10.7717/peerj.8614.

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“Higher” termites have been able to colonize all tropical and subtropical regions because of their ability to digest lignocellulose with the aid of their prokaryotic gut microbiota. Over the last decade, numerous studies based on 16S rRNA gene amplicon libraries have largely described both the taxonomy and structure of the prokaryotic communities associated with termite guts. Host diet and microenvironmental conditions have emerged as the main factors structuring the microbial assemblages in the different gut compartments. Additionally, these molecular inventories have revealed the existence o
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Dissertations / Theses on the topic "Phylum Bathyarchaeota"

1

Fillol, Homs Mireia. "Insights into the distribution and ecological role of members of the archaeal Phylum Bathyarchaeota. From the global to the local scale." Doctoral thesis, Universitat de Girona, 2017. http://hdl.handle.net/10803/405763.

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The Phylum Bathyarchaeota is currently one of the most studied uncultured archaeal phyla. Bathyarchaeota are phylogenetically diverse, globally ubiquitous and especially abundant in marine subsurface sediments. Despite their global significance, their ecological role is still unknown due to the lack of cultivated representatives and the paucity of available sequenced genomes. Besides, current distribution patterns provide few clues about their metabolic capabilities and physiological requirements. The current work tackled the problem by combining different phylogenetic and molecular technique
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