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Journal articles on the topic 'Plant metabolomics'

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1

Hall, Robert, Mike Beale, Oliver Fiehn, Nigel Hardy, Lloyd Sumner, and Raoul Bino. "Plant Metabolomics." Plant Cell 14, no. 7 (2002): 1437–40. http://dx.doi.org/10.1105/tpc.140720.

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2

Carrera, Fredy P., Carlos Noceda, María G. Maridueña-Zavala, and Juan M. Cevallos-Cevallos. "Metabolomics, a Powerful Tool for Understanding Plant Abiotic Stress." Agronomy 11, no. 5 (2021): 824. http://dx.doi.org/10.3390/agronomy11050824.

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Metabolomics is a technology that generates large amounts of data and contributes to obtaining wide and integral explanations of the biochemical state of a living organism. Plants are continuously affected by abiotic stresses such as water scarcity, high temperatures and high salinity, and metabolomics has the potential for elucidating the response-to-stress mechanisms and develop resistance strategies in affected cultivars. This review describes the characteristics of each of the stages of metabolomic studies in plants and the role of metabolomics in the characterization of the response of va
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Gaffney, Isabella, Jonathan Brett Sallach, Julie Wilson, Edmund Bergström, and Jane Thomas-Oates. "Metabolomic Approaches to Studying the Response to Drought Stress in Corn (Zea mays) Cobs." Metabolites 11, no. 7 (2021): 438. http://dx.doi.org/10.3390/metabo11070438.

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Metabolomics is a technique that allows for the evaluation of the entire extractable chemical profile of a plant, for example, using high-resolution mass spectrometry (HRMS) and can be used to evaluate plant stress responses, such as those due to drought. Metabolomic analysis is dependent upon the efficiency of the extraction protocol. Currently, there are two common extraction procedures widely used in metabolomic experiments, those that extract from plant tissue processed in liquid nitrogen or extraction from lyophilised plant tissues. Here, we evaluated the two using non-targeted metabolomi
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4

Fukushima, Atsushi, Mikiko Takahashi, Hideki Nagasaki, et al. "Development of RIKEN Plant Metabolome MetaDatabase." Plant and Cell Physiology 63, no. 3 (2021): 433–40. http://dx.doi.org/10.1093/pcp/pcab173.

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Abstract The advancement of metabolomics in terms of techniques for measuring small molecules has enabled the rapid detection and quantification of numerous cellular metabolites. Metabolomic data provide new opportunities to gain a deeper understanding of plant metabolism that can improve the health of both plants and humans that consume them. Although major public repositories for general metabolomic data have been established, the community still has shortcomings related to data sharing, especially in terms of data reanalysis, reusability and reproducibility. To address these issues, we deve
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5

Kráľová, Katarína, Josef Jampílek, and Ivan Ostrovský. "Metabolomics - Useful Tool for Study of Plant Responses to Abiotic Stresses." Ecological Chemistry and Engineering S 19, no. 2 (2012): 133–61. http://dx.doi.org/10.2478/v10216-011-0012-0.

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Metabolomics - Useful Tool for Study of Plant Responses to Abiotic Stresses Abiotic stresses are produced by inappropriate levels of physical components of the environment and cause plant injury through unique mechanisms that result in specific responses. Metabolomics is a relatively new approach aimed at improved understanding of metabolic networks and the subsequent biochemical composition of plants and other biological organisms. The paper is focused on the use of metabolomics, metabolic profiling and metabolic fingerprinting to study plant responses to some environmental stresses (eg eleva
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6

Castro-Moretti, Fernanda R., Irene N. Gentzel, David Mackey, and Ana P. Alonso. "Metabolomics as an Emerging Tool for the Study of Plant–Pathogen Interactions." Metabolites 10, no. 2 (2020): 52. http://dx.doi.org/10.3390/metabo10020052.

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Plants defend themselves from most microbial attacks via mechanisms including cell wall fortification, production of antimicrobial compounds, and generation of reactive oxygen species. Successful pathogens overcome these host defenses, as well as obtain nutrients from the host. Perturbations of plant metabolism play a central role in determining the outcome of attempted infections. Metabolomic analyses, for example between healthy, newly infected and diseased or resistant plants, have the potential to reveal perturbations to signaling or output pathways with key roles in determining the outcom
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7

Gomez-Casati, Diego F., Maria I. Zanor, and María V. Busi. "Metabolomics in Plants and Humans: Applications in the Prevention and Diagnosis of Diseases." BioMed Research International 2013 (2013): 1–11. http://dx.doi.org/10.1155/2013/792527.

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In the recent years, there has been an increase in the number of metabolomic approaches used, in parallel with proteomic and functional genomic studies. The wide variety of chemical types of metabolites available has also accelerated the use of different techniques in the investigation of the metabolome. At present, metabolomics is applied to investigate several human diseases, to improve their diagnosis and prevention, and to design better therapeutic strategies. In addition, metabolomic studies are also being carried out in areas such as toxicology and pharmacology, crop breeding, and plant
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8

Silva, Sónia, Maria Celeste Dias, Diana C. G. A. Pinto, and Artur M. S. Silva. "Metabolomics as a Tool to Understand Nano-Plant Interactions: The Case Study of Metal-Based Nanoparticles." Plants 12, no. 3 (2023): 491. http://dx.doi.org/10.3390/plants12030491.

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Metabolomics is a powerful tool in diverse research areas, enabling an understanding of the response of organisms, such as plants, to external factors, their resistance and tolerance mechanisms against stressors, the biochemical changes and signals during plant development, and the role of specialized metabolites. Despite its advantages, metabolomics is still underused in areas such as nano-plant interactions. Nanoparticles (NPs) are all around us and have a great potential to improve and revolutionize the agri-food sector and modernize agriculture. They can drive precision and sustainability
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9

Gonda, Sándor. "Special Issue: Plant Metabolomics." Metabolites 10, no. 11 (2020): 467. http://dx.doi.org/10.3390/metabo10110467.

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This Special Issue was initiated to collect a handful of studies on plant chemistry, utilizing metabolomics as the main technique, to show the diversity of possible applications of this approach [...]
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10

Tohge, Takayuki, Leonardo Perez de Souza, and Alisdair R. Fernie. "Genome-enabled plant metabolomics." Journal of Chromatography B 966 (September 2014): 7–20. http://dx.doi.org/10.1016/j.jchromb.2014.04.003.

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11

Shahid, Mohammad, Udai B. Singh, and Mohammad Saghir Khan. "Metabolomics-Based Mechanistic Insights into Revealing the Adverse Effects of Pesticides on Plants: An Interactive Review." Metabolites 13, no. 2 (2023): 246. http://dx.doi.org/10.3390/metabo13020246.

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In plant biology, metabolomics is often used to quantitatively assess small molecules, metabolites, and their intermediates in plants. Metabolomics has frequently been applied to detect metabolic alterations in plants exposed to various biotic and abiotic stresses, including pesticides. The widespread use of pesticides and agrochemicals in intensive crop production systems is a serious threat to the functionality and sustainability of agroecosystems. Pesticide accumulation in soil may disrupt soil–plant relationships, thereby posing a pollution risk to agricultural output. Application of metab
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12

Zheng, Jiamin, Mathew Johnson, Rupasri Mandal, and David S. Wishart. "A Comprehensive Targeted Metabolomics Assay for Crop Plant Sample Analysis." Metabolites 11, no. 5 (2021): 303. http://dx.doi.org/10.3390/metabo11050303.

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Metabolomics plays an important role in various fields from health to agriculture. However, the comprehensive quantitative metabolomic analysis of plants and plant metabolites has not been widely performed. Liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS)-based plant metabolomics offers the sensitivity and breadth of coverage for both phenotyping and disease diagnosis of plants. Here, we report a high-coverage and quantitative MS-based assay for plant metabolite analysis. The assay detects and quantifies 206 primary and secondary plant metabolites, including many key plan
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13

Tsuchida, Sachio, and Tomohiro Nakayama. "Metabolomics Research in Periodontal Disease by Mass Spectrometry." Molecules 27, no. 9 (2022): 2864. http://dx.doi.org/10.3390/molecules27092864.

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Periodontology is a newer field relative to other areas of dentistry. Remarkable progress has been made in recent years in periodontology in terms of both research and clinical applications, with researchers worldwide now focusing on periodontology. With recent advances in mass spectrometry technology, metabolomics research is now widely conducted in various research fields. Metabolomics, which is also termed metabolomic analysis, is a technology that enables the comprehensive analysis of small-molecule metabolites in living organisms. With the development of metabolite analysis, methods using
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14

Qi, Xiaoquan, and Dabing Zhang. "Plant metabolomics and metabolic biology." Journal of Integrative Plant Biology 56, no. 9 (2014): 814–15. http://dx.doi.org/10.1111/jipb.12247.

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15

Brunetti, Cecilia, Rachel M. George, Massimiliano Tattini, Katie Field, and Matthew P. Davey. "Metabolomics in plant environmental physiology." Journal of Experimental Botany 64, no. 13 (2013): 4011–20. http://dx.doi.org/10.1093/jxb/ert244.

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16

Foito, Alexandre. "Plant metabolomics. Methods and protocols." Annals of Botany 113, no. 7 (2014): vi. http://dx.doi.org/10.1093/aob/mcu089.

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17

Guy, Charles, Joachim Kopka, and Thomas Moritz. "Plant metabolomics coming of age." Physiologia Plantarum 132, no. 2 (2007): 113–16. http://dx.doi.org/10.1111/j.1399-3054.2007.01020.x.

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18

Shulaev, Vladimir, Diego Cortes, Gad Miller, and Ron Mittler. "Metabolomics for plant stress response." Physiologia Plantarum 132, no. 2 (2008): 199–208. http://dx.doi.org/10.1111/j.1399-3054.2007.01025.x.

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19

Nakabayashi, Ryo, and Kazuki Saito. "Metabolomics for unknown plant metabolites." Analytical and Bioanalytical Chemistry 405, no. 15 (2013): 5005–11. http://dx.doi.org/10.1007/s00216-013-6869-2.

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20

Kim, Hye Kyong, and Rob Verpoorte. "Sample preparation for plant metabolomics." Phytochemical Analysis 21, no. 1 (2009): 4–13. http://dx.doi.org/10.1002/pca.1188.

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21

Saito, Kazuki. "Development of Plant Metabolomics and Medicinal Plant Genomics." YAKUGAKU ZASSHI 138, no. 1 (2018): 1–18. http://dx.doi.org/10.1248/yakushi.17-00193.

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22

Chen, Fangfang, Ruijing Ma, and Xiao-Lin Chen. "Advances of Metabolomics in Fungal Pathogen–Plant Interactions." Metabolites 9, no. 8 (2019): 169. http://dx.doi.org/10.3390/metabo9080169.

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Plant disease caused by fungus is one of the major threats to global food security, and understanding fungus–plant interactions is important for plant disease control. Research devoted to revealing the mechanisms of fungal pathogen–plant interactions has been conducted using genomics, transcriptomics, proteomics, and metabolomics. Metabolomics research based on mass spectrometric techniques is an important part of systems biology. In the past decade, the emerging field of metabolomics in plant pathogenic fungi has received wide attention. It not only provides a qualitative and quantitative app
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23

García, Carlos J., Verónica Alacid, Francisco A. Tomás-Barberán, Carlos García, and Pedro Palazón. "Untargeted Metabolomics to Explore the Bacteria Exo-Metabolome Related to Plant Biostimulants." Agronomy 12, no. 8 (2022): 1926. http://dx.doi.org/10.3390/agronomy12081926.

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The control and development of plant growth promoters is a key factor for the agro-nomy industry in its economic performance. Different genera of bacteria are widely used as natural biostimulants with the aim of enhancing nutrition efficiency, abiotic stress tolerance and/or crop quality traits, regardless of their nutrients content. However, the complete exo-metabolome of the bacteria responsible for the biostimulant effect is still unknown and needs to be investigated. Three bacteria with different biostimulant effects were studied by untargeted metabolomics in order to describe the metaboli
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24

Sun, Wenli, Zican Chen, Jun Hong, and Jianxin Shi. "Promoting Human Nutrition and Health through Plant Metabolomics: Current Status and Challenges." Biology 10, no. 1 (2020): 20. http://dx.doi.org/10.3390/biology10010020.

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Plant metabolomics plays important roles in both basic and applied studies regarding all aspects of plant development and stress responses. With the improvement of living standards, people need high quality and safe food supplies. Thus, understanding the pathways involved in the biosynthesis of nutritionally and healthily associated metabolites in plants and the responses to plant-derived biohazards in humans is of equal importance to meet people’s needs. For each, metabolomics has a vital role to play, which is discussed in detail in this review. In addition, the core elements of plant metabo
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25

Peters, Kristian, Anja Worrich, Alexander Weinhold, et al. "Current Challenges in Plant Eco-Metabolomics." International Journal of Molecular Sciences 19, no. 5 (2018): 1385. http://dx.doi.org/10.3390/ijms19051385.

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26

Kim, Suk-Weon, Yong-Kook Kwon, Jong-Hyun Kim, and Jang-R. Liu. "Present and prospect of plant metabolomics." Journal of Plant Biotechnology 37, no. 1 (2010): 12–24. http://dx.doi.org/10.5010/jpb.2010.37.1.012.

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27

Ryan, Danielle, and Kevin Robards. "Analytical Chemistry Considerations in Plant Metabolomics." Separation & Purification Reviews 35, no. 4 (2006): 319–56. http://dx.doi.org/10.1080/15422110601003523.

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28

Laue, Grit, and Andy Boseley. "Second international conference on plant metabolomics." Pesticide Outlook 14, no. 4 (2003): 179–81. http://dx.doi.org/10.1039/b308504j.

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29

腊, 贵晓. "Application of Metabolomics in Plant Research." Botanical Research 05, no. 01 (2016): 27–34. http://dx.doi.org/10.12677/br.2016.51005.

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30

Fukusaki, Eiichiro, and Akio Kobayashi. "Plant metabolomics: potential for practical operation." Journal of Bioscience and Bioengineering 100, no. 4 (2005): 347–54. http://dx.doi.org/10.1263/jbb.100.347.

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31

Augustijn, Dieuwertje, Huub J. M. de Groot, and A. Alia. "HR-MAS NMR Applications in Plant Metabolomics." Molecules 26, no. 4 (2021): 931. http://dx.doi.org/10.3390/molecules26040931.

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Metabolomics is used to reduce the complexity of plants and to understand the underlying pathways of the plant phenotype. The metabolic profile of plants can be obtained by mass spectrometry or liquid-state NMR. The extraction of metabolites from the sample is necessary for both techniques to obtain the metabolic profile. This extraction step can be eliminated by making use of high-resolution magic angle spinning (HR-MAS) NMR. In this review, an HR-MAS NMR-based workflow is described in more detail, including used pulse sequences in metabolomics. The pre-processing steps of one-dimensional HR-
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32

Sumner, Lloyd W., Zhentian Lei, Basil J. Nikolau, and Kazuki Saito. "Modern plant metabolomics: advanced natural product gene discoveries, improved technologies, and future prospects." Natural Product Reports 32, no. 2 (2015): 212–29. http://dx.doi.org/10.1039/c4np00072b.

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33

Alvarez, Sophie, and Michael J. Naldrett. "Mass spectrometry based untargeted metabolomics for plant systems biology." Emerging Topics in Life Sciences 5, no. 2 (2021): 189–201. http://dx.doi.org/10.1042/etls20200271.

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Untargeted metabolomics enables the identification of key changes to standard pathways, but also aids in revealing other important and possibly novel metabolites or pathways for further analysis. Much progress has been made in this field over the past decade and yet plant metabolomics seems to still be an emerging approach because of the high complexity of plant metabolites and the number one challenge of untargeted metabolomics, metabolite identification. This final and critical stage remains the focus of current research. The intention of this review is to give a brief current state of LC–MS
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34

Lin, Chuwei, Aneirin Alan Lott, Wei Zhu, Craig P. Dufresne, and Sixue Chen. "Mitogen-Activated Protein Kinase 4-Regulated Metabolic Networks." International Journal of Molecular Sciences 23, no. 2 (2022): 880. http://dx.doi.org/10.3390/ijms23020880.

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Mitogen-activated protein kinase 4 (MPK4) was first identified as a negative regulator of systemic acquired resistance. It is also an important kinase involved in many other biological processes in plants, including cytokinesis, reproduction, and photosynthesis. Arabidopsis thaliana mpk4 mutant is dwarf and sterile. Previous omics studies including genomics, transcriptomics, and proteomics have revealed new functions of MPK4 in different biological processes. However, due to challenges in metabolomics, no study has touched upon the metabolomic profiles of the mpk4 mutant. What metabolites and
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35

Karabulut, Fadime. "Emerging trends for Harnessing plant metabolome and microbiome for sustainable food Production." Micro Environer 1, no. 01 (2021): 33–53. http://dx.doi.org/10.54458/mev.v1i01.6672.

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Food production is obligatory to ensure efficient plant yield and accomplishments in a fast-growing global population predicted to exceed 9 trillion people in the future. In this regard, advancement in harnessing plant core microbiome using various 'omics' will be fruitful towards sustainable goals. Metabolomics, as we know, is a robust method and is very useful for evaluating the property of plant species before their genomes are completely sequenced. Metabolomics and other technologies facilitate us to unravel main agricultural output challenges such as regulating the health of soil microbia
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36

Jahangir, Muhammad, Atta-ur-Rehman, Ibrahim Bayoumi Abdel Farid, Robert Verpoorte, Imran Khan, and Jiangnan Peng. "NMR-Based Metabolomics for Geographical Discrimination of Adhatoda vasica Leaves." Plants 12, no. 3 (2023): 453. http://dx.doi.org/10.3390/plants12030453.

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Adhatoda vasica (L.), Nees is a widespread plant in Asia. It is used in Ayurvedic and Unani medications for the management of various infections and health disorders, especially as a decoction to treat cough, chronic bronchitis, and asthma. Although it has a diverse metabolomic profile, this plant is particularly known for its alkaloids. The present study is the first to report a broad range of present compounds, e.g., α-linolenic acid, acetate, alanine, threonine, valine, glutamate, malate, fumaric acid, sucrose, β-glucose, kaempferol analogues, quercetin analogues, luteolin, flavone glucosid
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37

Ramabulana, Anza-Tshilidzi, Paul A. Steenkamp, Ntakadzeni E. Madala, and Ian A. Dubery. "Application of Plant Growth Regulators Modulates the Profile of Chlorogenic Acids in Cultured Bidens pilosa Cells." Plants 10, no. 3 (2021): 437. http://dx.doi.org/10.3390/plants10030437.

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Plant cell culture offers an alternative to whole plants for the production of biologically important specialised metabolites. In cultured plant cells, manipulation by auxin and cytokinin plant growth regulators (PGRs) may lead to in vitro organogenesis and metabolome changes. In this study, six different combination ratios of 2,4-dichlorophenoxyacetic acid (2,4-D) and benzylaminopurine (BAP) were investigated with the aim to induce indirect organogenesis from Bidens pilosa callus and to investigate the associated induced changes in the metabolomes of these calli. Phenotypic appearance of the
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38

Valentino, Giovanna, Vittoria Graziani, Brigida D’Abrosca, Severina Pacifico, Antonio Fiorentino, and Monica Scognamiglio. "NMR-Based Plant Metabolomics in Nutraceutical Research: An Overview." Molecules 25, no. 6 (2020): 1444. http://dx.doi.org/10.3390/molecules25061444.

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Few topics are able to channel the interest of researchers, the public, and industries, like nutraceuticals. The ever-increasing demand of new compounds or new sources of known active compounds, along with the need of a better knowledge about their effectiveness, mode of action, safety, etc., led to a significant effort towards the development of analytical approaches able to answer the many questions related to this topic. Therefore, the application of cutting edges approaches to this area has been observed. Among these approaches, metabolomics is a key player. Herewith, the applications of N
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39

Ivanović, Stefan, Katarina Simić, Stefan Lekić, Milka Jadranin, Ljubodrag Vujisić, and Dejan Gođevac. "Plant Metabolomics as a Tool for Detecting Adulterants in Edible Plant: A Case Study of Allium ursinum." Metabolites 12, no. 9 (2022): 849. http://dx.doi.org/10.3390/metabo12090849.

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Allium ursinum and poisonous adulterants Convallaria majalis and Arum maculatum were used as a model for detection of adulterants in edible plant. A. ursinum samples were spiked with C. majalis and A. maculatum to mimic adulteration. Metabolomic fingerprinting of all samples was performed using 1H NMR spectroscopy, and the resulting data sets were subjected to multivariate data analysis. As a result of this analysis, signals of adulterants were extracted from the data, and the structures of biomarkers of adulteration from partially purified samples were elucidated using 2D NMR and LC-MS techni
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40

Hong, Jun, Litao Yang, Dabing Zhang, and Jianxin Shi. "Plant Metabolomics: An Indispensable System Biology Tool for Plant Science." International Journal of Molecular Sciences 17, no. 6 (2016): 767. http://dx.doi.org/10.3390/ijms17060767.

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41

Saito, K. "Plant metabolomics: a basis for plant functional genomics and biotechnology." New Biotechnology 25 (September 2009): S317—S318. http://dx.doi.org/10.1016/j.nbt.2009.06.869.

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42

Allwood, James William, Alex Williams, Henriette Uthe, et al. "Unravelling Plant Responses to Stress—The Importance of Targeted and Untargeted Metabolomics." Metabolites 11, no. 8 (2021): 558. http://dx.doi.org/10.3390/metabo11080558.

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Climate change and an increasing population, present a massive global challenge with respect to environmentally sustainable nutritious food production. Crop yield enhancements, through breeding, are decreasing, whilst agricultural intensification is constrained by emerging, re-emerging, and endemic pests and pathogens, accounting for ~30% of global crop losses, as well as mounting abiotic stress pressures, due to climate change. Metabolomics approaches have previously contributed to our knowledge within the fields of molecular plant pathology and plant–insect interactions. However, these remai
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43

Amjad Ali, Muhammad, Amjad Abbas, Farrukh Azeem, Nazir Javed, and Holger Bohlmann. "Plant-nematode Interactions: From Genomics to Metabolomics." International Journal of Agriculture and Biology 17, no. 06 (2015): 1071–82. http://dx.doi.org/10.17957/ijab/15.0037.

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44

Sakurai, Nozomu. "Recent applications of metabolomics in plant breeding." Breeding Science 72, no. 1 (2022): 56–65. http://dx.doi.org/10.1270/jsbbs.21065.

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45

de Souza, Leonardo Perez, Monica Borghi, and Alisdair Fernie. "Plant Single-Cell Metabolomics—Challenges and Perspectives." International Journal of Molecular Sciences 21, no. 23 (2020): 8987. http://dx.doi.org/10.3390/ijms21238987.

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Omics approaches for investigating biological systems were introduced in the mid-1990s and quickly consolidated to become a fundamental pillar of modern biology. The idea of measuring the whole complement of genes, transcripts, proteins, and metabolites has since become widespread and routinely adopted in the pursuit of an infinity of scientific questions. Incremental improvements over technical aspects such as sampling, sensitivity, cost, and throughput pushed even further the boundaries of what these techniques can achieve. In this context, single-cell genomics and transcriptomics quickly be
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46

SCHAUER, N., and A. FERNIE. "Plant metabolomics: towards biological function and mechanism." Trends in Plant Science 11, no. 10 (2006): 508–16. http://dx.doi.org/10.1016/j.tplants.2006.08.007.

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47

Okazaki, Yozo, and Kazuki Saito. "Recent advances of metabolomics in plant biotechnology." Plant Biotechnology Reports 6, no. 1 (2011): 1–15. http://dx.doi.org/10.1007/s11816-011-0191-2.

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48

Rigobello-Masini, Marilda, José Carlos Pires Penteado, and Jorge Cesar Masini. "Monolithic columns in plant proteomics and metabolomics." Analytical and Bioanalytical Chemistry 405, no. 7 (2012): 2107–22. http://dx.doi.org/10.1007/s00216-012-6574-6.

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49

Jacobs, Doris M., Marco A. van den Berg, and Robert D. Hall. "Towards superior plant-based foods using metabolomics." Current Opinion in Biotechnology 70 (August 2021): 23–28. http://dx.doi.org/10.1016/j.copbio.2020.08.010.

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50

Mashabela, Manamele, Priscilla Masamba, and Abidemi Kappo. "Metabolomics and Chemoinformatics in Agricultural Biotechnology Research: Complementary Probes in Unravelling New Metabolites for Crop Improvement." Biology 11, no. 8 (2022): 1156. http://dx.doi.org/10.3390/biology11081156.

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The United Nations (UN) estimate that the global population will reach 10 billion people by 2050. These projections have placed the agroeconomic industry under immense pressure to meet the growing demand for food and maintain global food security. However, factors associated with climate variability and the emergence of virulent plant pathogens and pests pose a considerable threat to meeting these demands. Advanced crop improvement strategies are required to circumvent the deleterious effects of biotic and abiotic stress and improve yields. Metabolomics is an emerging field in the omics pipeli
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