Relevant bibliographies by topics / Plant specialized metabolome

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  2. Dissertations / Theses
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  4. Book chapters

Academic literature on the topic 'Plant specialized metabolome'

Author: Grafiati
Published: 11 March 2023
Last updated: 31 July 2025

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Journal articles on the topic "Plant specialized metabolome"

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Schweiger, Rabea, Eva Castells, Luca Da Sois, Jordi Martínez-Vilalta, and Caroline Müller. "Highly Species-Specific Foliar Metabolomes of Diverse Woody Species and Relationships with the Leaf Economics Spectrum." Cells 10, no. 3 (2021): 644. http://dx.doi.org/10.3390/cells10030644.

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Plants show an extraordinary diversity in chemical composition and are characterized by different functional traits. However, relationships between the foliar primary and specialized metabolism in terms of metabolite numbers and composition as well as links with the leaf economics spectrum have rarely been explored. We investigated these relationships in leaves of 20 woody species from the Mediterranean region grown as saplings in a common garden, using a comparative ecometabolomics approach that included (semi-)polar primary and specialized metabolites. Our analyses revealed significant posit
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Li, Dapeng, Rayko Halitschke, Ian T. Baldwin, and Emmanuel Gaquerel. "Information theory tests critical predictions of plant defense theory for specialized metabolism." Science Advances 6, no. 24 (2020): eaaz0381. http://dx.doi.org/10.1126/sciadv.aaz0381.

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Different plant defense theories have provided important theoretical guidance in explaining patterns in plant specialized metabolism, but their critical predictions remain to be tested. Here, we systematically explored the metabolomes of Nicotiana attenuata, from single plants to populations, as well as of closely related species, using unbiased tandem mass spectrometry (MS/MS) analyses and processed the abundances of compound spectrum–based MS features within an information theory framework to test critical predictions of optimal defense (OD) and moving target (MT) theories. Information compo
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Rai, Megha, Amit Rai, Tetsuya Mori, et al. "Gene-Metabolite Network Analysis Revealed Tissue-Specific Accumulation of Therapeutic Metabolites in Mallotus japonicus." International Journal of Molecular Sciences 22, no. 16 (2021): 8835. http://dx.doi.org/10.3390/ijms22168835.

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Mallotus japonicus is a valuable traditional medicinal plant in East Asia for applications as a gastrointestinal drug. However, the molecular components involved in the biosynthesis of bioactive metabolites have not yet been explored, primarily due to a lack of omics resources. In this study, we established metabolome and transcriptome resources for M. japonicus to capture the diverse metabolite constituents and active transcripts involved in its biosynthesis and regulation. A combination of untargeted metabolite profiling with data-dependent metabolite fragmentation and metabolite annotation
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Desmet, Sandrien, Kris Morreel, and Rebecca Dauwe. "Origin and Function of Structural Diversity in the Plant Specialized Metabolome." Plants 10, no. 11 (2021): 2393. http://dx.doi.org/10.3390/plants10112393.

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The plant specialized metabolome consists of a multitude of structurally and functionally diverse metabolites, variable from species to species. The specialized metabolites play roles in the response to environmental changes and abiotic or biotic stresses, as well as in plant growth and development. At its basis, the specialized metabolism is built of four major pathways, each starting from a few distinct primary metabolism precursors, and leading to distinct basic carbon skeleton core structures: polyketides and fatty acid derivatives, terpenoids, alkaloids, and phenolics. Structural diversit
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Dubery, Ian A., Lerato P. Nephali, Fidele Tugizimana, and Paul A. Steenkamp. "Data-Driven Characterization of Metabolome Reprogramming during Early Development of Sorghum Seedlings." Metabolites 14, no. 2 (2024): 112. http://dx.doi.org/10.3390/metabo14020112.

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Specialized metabolites are produced via discrete metabolic pathways. These small molecules play significant roles in plant growth and development, as well as defense against environmental stresses. These include damping off or seedling blight at a post-emergence stage. Targeted metabolomics was followed to gain insights into metabolome changes characteristic of different developmental stages of sorghum seedlings. Metabolites were extracted from leaves at seven time points post-germination and analyzed using ultra-high performance liquid chromatography coupled to mass spectrometry. Multivariat
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Silva, Sónia, Maria Celeste Dias, Diana C. G. A. Pinto, and Artur M. S. Silva. "Metabolomics as a Tool to Understand Nano-Plant Interactions: The Case Study of Metal-Based Nanoparticles." Plants 12, no. 3 (2023): 491. http://dx.doi.org/10.3390/plants12030491.

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Metabolomics is a powerful tool in diverse research areas, enabling an understanding of the response of organisms, such as plants, to external factors, their resistance and tolerance mechanisms against stressors, the biochemical changes and signals during plant development, and the role of specialized metabolites. Despite its advantages, metabolomics is still underused in areas such as nano-plant interactions. Nanoparticles (NPs) are all around us and have a great potential to improve and revolutionize the agri-food sector and modernize agriculture. They can drive precision and sustainability
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Mishra, Ajay Kumar, Naganeeswaran Sudalaimuthuasari, Khaled M. Hazzouri, Esam Eldin Saeed, Iltaf Shah, and Khaled M. A. Amiri. "Tapping into Plant–Microbiome Interactions through the Lens of Multi-Omics Techniques." Cells 11, no. 20 (2022): 3254. http://dx.doi.org/10.3390/cells11203254.

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This review highlights the pivotal role of root exudates in the rhizosphere, especially the interactions between plants and microbes and between plants and plants. Root exudates determine soil nutrient mobilization, plant nutritional status, and the communication of plant roots with microbes. Root exudates contain diverse specialized signaling metabolites (primary and secondary). The spatial behavior of these metabolites around the root zone strongly influences rhizosphere microorganisms through an intimate compatible interaction, thereby regulating complex biological and ecological mechanisms
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Lazcano-Ramírez, Hugo Gerardo, Roberto Gamboa-Becerra, Irving J. García-López, et al. "Effects of the Developmental Regulator BOLITA on the Plant Metabolome." Genes 12, no. 7 (2021): 995. http://dx.doi.org/10.3390/genes12070995.

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Transcription factors are important regulators of gene expression. They can orchestrate the activation or repression of hundreds or thousands of genes and control diverse processes in a coordinated way. This work explores the effect of a master regulator of plant development, BOLITA (BOL), in plant metabolism, with a special focus on specialized metabolism. For this, we used an Arabidopsis thaliana line in which the transcription factor activity can be induced. Fingerprinting metabolomic analyses of whole plantlets were performed at different times after induction. After 96 h, all induced repl
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Li, Dapeng, and Emmanuel Gaquerel. "Next-Generation Mass Spectrometry Metabolomics Revives the Functional Analysis of Plant Metabolic Diversity." Annual Review of Plant Biology 72, no. 1 (2021): 867–91. http://dx.doi.org/10.1146/annurev-arplant-071720-114836.

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The remarkable diversity of specialized metabolites produced by plants has inspired several decades of research and nucleated a long list of theories to guide empirical ecological studies. However, analytical constraints and the lack of untargeted processing workflows have long precluded comprehensive metabolite profiling and, consequently, the collection of the critical currencies to test theory predictions for the ecological functions of plant metabolic diversity. Developments in mass spectrometry (MS) metabolomics have revolutionized the large-scale inventory and annotation of chemicals fro
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Perez de Souza, Leonardo, Federico Scossa, Sebastian Proost, et al. "Multi‐tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome." Plant Journal 97, no. 6 (2019): 1132–53. http://dx.doi.org/10.1111/tpj.14178.

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Dissertations / Theses on the topic "Plant specialized metabolome"

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Xie, Zhengzhi. "Investigation of Plant Specialized Metabolism (Secondary Metabolism) Using Metabolomic and Proteomic Approaches." Diss., The University of Arizona, 2007. http://hdl.handle.net/10150/195218.

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Specialized metabolism (secondary metabolism) in glandular trichomes of sweet basil (Ocimum basilicum L.) and accumulation of specialized metabolites (secondary metabolites) in rhizomes of turmeric (Curcuma longa L.) was investigated using proteomic and metabolomic approaches, respectively. In an effort to further clarify the regulation of metabolism in the glandular trichomes of sweet basil, we utilized a proteomics-based approach that applied MudPIT (multidimensional protein identification technology) and GeLC-MS/MS (gel enhanced LC-MS/MS) to protein samples from isolated trichomes of four d
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Negri, Stefano. "The tomato serotonin pathway: unravelling the puzzling biological roles of plant indolamines." Doctoral thesis, 2020. http://hdl.handle.net/11562/1017074.

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Tryptamine and serotonin are specialized metabolites belonging to the group of tryptophan-derived indolamines that have been demonstrated to be widespread among all the living kingdoms, in which evolution shaped very different distributions and functional versatility. First discovered in humans, these metabolites were later detected in plants in which, despite their wide occurrence in several plant families, the study of their biological roles has been largely neglected. Tryptamine, due to its central position as a precursor of many plant specialized metabolites, including serotonin, has long
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Books on the topic "Plant specialized metabolome"

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Mewis, Inga, Marie-Theres Hauser, Titta Katariina Kotilainen, and Nadja Förster, eds. Effects of Different Light Spectra on Secondary/Specialized Metabolite Accumulation and Plant Resistance Mechanisms. Frontiers Media SA, 2021. http://dx.doi.org/10.3389/978-2-88971-705-7.

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Book chapters on the topic "Plant specialized metabolome"

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Kautsar, Satria A., Hernando G. Suarez Duran, and Marnix H. Medema. "Genomic Identification and Analysis of Specialized Metabolite Biosynthetic Gene Clusters in Plants Using PlantiSMASH." In Methods in Molecular Biology. Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-7874-8_15.

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Jeyapragash, Danaraj, Ayyappan Saravanakumar, and Mariasingarayan Yosuva. "Seagrass Metabolomics: A New Insight towards Marine Based Drug Discovery." In Metabolomics - Methodology and Applications in Medical Sciences and Life Sciences. IntechOpen, 2021. http://dx.doi.org/10.5772/intechopen.97875.

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Metabolomics is one of the new field of “Omics” approach and the youngest triad of system biology, which provides a broad prospective of how metabolic networks are controlled and indeed emerged as a complementary tool to functional genomics with well-established technologies for genomics, transcriptomics and proteomics. Though, metabolite profiling has been carried out for decades, owing to decisive mechanism of a molecule regulation, the importance of some metabolites in human regimen and their use as diagnostic markers is now being recognized. Plant metabolomics therefore aims to highlight t
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"Carbohydrates and Glycosides." In Chemical Diversity of Plant Specialized Metabolites. Royal Society of Chemistry, 2023. http://dx.doi.org/10.1039/9781837671472-00005.

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Carbohydrates may be categorized into three classes, as monosaccharides, di- and oligosaccharides, and polysaccharides (starches, cellulose, hemicelluloses, pectin, gums and mucilages). Carbohydrates are sources of energy, storage compounds and structural components in plants. Many soluble sugars, known as compatible solutes, accumulate in plants and protect the plant from stress induced cellular disturbances. Many polysaccharides (such as cellulose, hemicellulose, pectin, non-digestible oligosaccharides, gums and mucilages), resistant to human salivary and intestinal enzymes, are considered a
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Shukla, Pragya, Archana Prasad, Khushboo Chawda, Gauri Saxena, Kapil D. Pandey, and Debasis Chakrabarty. "Glandular Trichomes: Bio-cell Factories of Plant Secondary Metabolites." In In Vitro Propagation and Secondary Metabolite Production from Medicinal Plants: Current Trends (Part 1). BENTHAM SCIENCE PUBLISHERS, 2024. http://dx.doi.org/10.2174/9789815165227124010008.

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Trichomes are specialised epidermal outgrowth that is present on the aerial parts of plants. On the basis of morphological and cellular variation, they are categorized into non-glandular trichomes (NGTs) and glandular trichomes (GTs). NGTs are known to be involved in the protective and defensive roles that attribute to provide structural and chemical corroboration to form specialized groups of secondary metabolites. GTs are specialized micro-organs that are considered factories for the biosynthesis of a considerable amount of different classes of bioactive metabolites. Conventionally these gla
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Nandini, Boregowda, Kiran S. Mawale, and Parvatam Giridhar. "The Contemporary Facts Towards In Vitro Production of the Plant-derived Medicinal Metabolites." In In Vitro Propagation and Secondary Metabolite Production from Medicinal Plants: Current Trends (Part 1). BENTHAM SCIENCE PUBLISHERS, 2024. http://dx.doi.org/10.2174/9789815165227124010014.

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Plants are active biochemical factories of a vast group of secondary metabolites (SMs) and these SMs are indeed a basic source of various commercial pharmaceutical drugs. From the prehistoric time, plants have been used for therapeutic resolutions. Medicinal and aromatic plants are the biogenic pond of diverse forms of SMs, which results in their overexploitation. There is an increasing need for the natural phytochemicals from plants for sustainable and economical value forces their mass production through in vitro plant tissue culture (PTC) methods. A vast quantity of medicinal plants and the
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Gupta, Shifali G., Paranjeet Kaur, Rajwinder G. Kaur, and Thakur G. Singh. "Harnessing the Potential of Metabolomic Biomarkers for Metabolic Health." In Biomedical Research Developments for Improved Healthcare. IGI Global, 2024. http://dx.doi.org/10.4018/979-8-3693-1922-2.ch007.

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Metabolomics is a fascinating area that specializes in analyzing the small molecules in our frame, like hormones and enzymes, that play an important role in our metabolism. With the aid of reading these molecules, scientists can gain insights into our metabolic fitness and the way our body processes nutrients. It entails different factors such as energy production, nutrient usage, and waste elimination. Through metabolomics, researchers can become aware of precise metabolic biomarkers that imply the state of our fitness. Through studying these markers, they are able to hit upon early symptoms
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