Relevant bibliographies by topics / Plant traits

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  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers
  6. Reports

Academic literature on the topic 'Plant traits'

Author: Grafiati
Published: 4 June 2021
Last updated: 21 February 2023

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Journal articles on the topic "Plant traits"

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Sack, Lawren, and Thomas N. Buckley. "Trait Multi-Functionality in Plant Stress Response." Integrative and Comparative Biology 60, no. 1 (December 11, 2019): 98–112. http://dx.doi.org/10.1093/icb/icz152.

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Abstract Plants often experience multiple stresses in a given day or season, and it is self-evident that given functional traits can provide tolerances of multiple stresses. Yet, the multiple functions of individual traits are rarely explicitly considered in ecology and evolution due to a lack of a quantitative framework. We present a theory for considering the combined importance of the several functions that a single trait can contribute to alleviating multiple stresses. We derive five inter-related general predictions: (1) that trait multifunctionality is overall highly beneficial to fitness; (2) that species possessing multifunctional traits should increase in abundance and in niche breadth; (3) that traits are typically optimized for multiple functions and thus can be far from optimal for individual functions; (4) that the relative importance of each function of a multifunctional trait depends on the environment; and (5) that traits will be often “co-opted” for additional functions during evolution and community assembly. We demonstrate how the theory can be applied quantitatively by examining the multiple functions of leaf trichomes (hairs) using heuristic model simulations, substantiating the general principles. We identify avenues for further development and applications of the theory of trait multifunctionality in ecology and evolution.
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The Plant Ontology Consortium. "The Plant Ontology™Consortium and Plant Ontologies." Comparative and Functional Genomics 3, no. 2 (2002): 137–42. http://dx.doi.org/10.1002/cfg.154.

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The goal of the Plant Ontology™Consortium is to produce structured controlled vocabularies, arranged in ontologies, that can be applied to plant-based database information even as knowledge of the biology of the relevant plant taxa (e.g. development, anatomy, morphology, genomics, proteomics) is accumulating and changing. The collaborators of the Plant Ontology™Consortium (POC) represent a number of core participant database groups. The Plant Ontology™Consortium is expanding the paradigm of the Gene Ontology™Consortium (http://www.geneontology.org). Various trait ontologies (agronomic traits, mutant phenotypes, phenotypes, traits, and QTL) and plant ontologies (plant development, anatomy [incl. morphology]) for several taxa (Arabidopsis, maize/corn/Zea mays and rice/Oryza) are under development. The products of the Plant Ontology™Consortium will be open-source.
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Seastedt, Tim. "Traits of plant invaders." Nature 459, no. 7248 (June 2009): 783–84. http://dx.doi.org/10.1038/459783a.

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Kraft, Nathan J. B., Oscar Godoy, and Jonathan M. Levine. "Plant functional traits and the multidimensional nature of species coexistence." Proceedings of the National Academy of Sciences 112, no. 3 (January 5, 2015): 797–802. http://dx.doi.org/10.1073/pnas.1413650112.

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Understanding the processes maintaining species diversity is a central problem in ecology, with implications for the conservation and management of ecosystems. Although biologists often assume that trait differences between competitors promote diversity, empirical evidence connecting functional traits to the niche differences that stabilize species coexistence is rare. Obtaining such evidence is critical because traits also underlie the average fitness differences driving competitive exclusion, and this complicates efforts to infer community dynamics from phenotypic patterns. We coupled field-parameterized mathematical models of competition between 102 pairs of annual plants with detailed sampling of leaf, seed, root, and whole-plant functional traits to relate phenotypic differences to stabilizing niche and average fitness differences. Single functional traits were often well correlated with average fitness differences between species, indicating that competitive dominance was associated with late phenology, deep rooting, and several other traits. In contrast, single functional traits were poorly correlated with the stabilizing niche differences that promote coexistence. Niche differences could only be described by combinations of traits, corresponding to differentiation between species in multiple ecological dimensions. In addition, several traits were associated with both fitness differences and stabilizing niche differences. These complex relationships between phenotypic differences and the dynamics of competing species argue against the simple use of single functional traits to infer community assembly processes but lay the groundwork for a theoretically justified trait-based community ecology.
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Song, Xianliang, and Tianzhen Zhang. "Quantitative trait loci controlling plant architectural traits in cotton." Plant Science 177, no. 4 (October 2009): 317–23. http://dx.doi.org/10.1016/j.plantsci.2009.05.015.

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Jiang, Feng, and Guangze Jin. "Functional traits influence plant survival depending on environmental contexts and life stages in an old-growth temperate forest." Journal of Plant Ecology 14, no. 5 (May 20, 2021): 981–94. http://dx.doi.org/10.1093/jpe/rtab049.

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Abstract Aims Functional traits are usually used to predict plant demographic rates without considering environmental contexts. However, previous studies have consistently found that traits have low explanatory power for plant demographic rates. We hypothesized that accounting for environmental contexts instead of focusing on traits alone could improve our understanding of how traits influence plant demographic rates. Methods We used generalized linear mixed-effect models to analyse the effects of functional traits (related to leaf, stem, seed and whole plant), environmental gradients (soil nutrients, water and elevation) and their interactions on the survival dynamics of 14 133 saplings and 3289 adults in a 9-ha old-growth temperate forest plot. Important Findings We found that environmental variables, neighbour crowding and traits alone (i.e. main effects) influenced plant survival. However, the effects of the latter two variables varied between saplings and adults. The trait–environment interactions influenced plant survival, such that resource conservative traits increased plant survival under harsh conditions but decreased survival under mild conditions. The elevational gradient was the most important environmental factor driving these effects in our plot. Our results support the hypothesis that functional traits influence plant survival depending on environmental contexts in local communities. These results also imply that one species with limited trait variation cannot occupy all environments, which can promote species diversity.
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Pérez-Harguindeguy, N., S. Díaz, E. Garnier, S. Lavorel, H. Poorter, P. Jaureguiberry, M. S. Bret-Harte, et al. "New handbook for standardised measurement of plant functional traits worldwide." Australian Journal of Botany 61, no. 3 (2013): 167. http://dx.doi.org/10.1071/bt12225.

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Plant functional traits are the features (morphological, physiological, phenological) that represent ecological strategies and determine how plants respond to environmental factors, affect other trophic levels and influence ecosystem properties. Variation in plant functional traits, and trait syndromes, has proven useful for tackling many important ecological questions at a range of scales, giving rise to a demand for standardised ways to measure ecologically meaningful plant traits. This line of research has been among the most fruitful avenues for understanding ecological and evolutionary patterns and processes. It also has the potential both to build a predictive set of local, regional and global relationships between plants and environment and to quantify a wide range of natural and human-driven processes, including changes in biodiversity, the impacts of species invasions, alterations in biogeochemical processes and vegetation–atmosphere interactions. The importance of these topics dictates the urgent need for more and better data, and increases the value of standardised protocols for quantifying trait variation of different species, in particular for traits with power to predict plant- and ecosystem-level processes, and for traits that can be measured relatively easily. Updated and expanded from the widely used previous version, this handbook retains the focus on clearly presented, widely applicable, step-by-step recipes, with a minimum of text on theory, and not only includes updated methods for the traits previously covered, but also introduces many new protocols for further traits. This new handbook has a better balance between whole-plant traits, leaf traits, root and stem traits and regenerative traits, and puts particular emphasis on traits important for predicting species’ effects on key ecosystem properties. We hope this new handbook becomes a standard companion in local and global efforts to learn about the responses and impacts of different plant species with respect to environmental changes in the present, past and future.
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Martin, Adam R., and Marney E. Isaac. "The leaf economics spectrum’s morning coffee: plant size-dependent changes in leaf traits and reproductive onset in a perennial tree crop." Annals of Botany 127, no. 4 (January 27, 2021): 483–93. http://dx.doi.org/10.1093/aob/mcaa199.

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Abstract Background and Aims Size-dependent changes in plant traits are an important source of intraspecific trait variation. However, there are few studies that have tested if leaf trait co-variation and/or trade-offs follow a within-genotype leaf economics spectrum (LES) related to plant size and reproductive onset. To our knowledge, there are no studies on any plant species that have tested whether or not the shape of a within-genotype LES that describes how traits covary across whole plant sizes, is the same as the shape of a within-genotype LES that represents environmentally driven trait plasticity. Methods We quantified size-dependent variation in eight leaf traits in a single coffee genotype (Coffea arabica var. Caturra) in managed agroecosystems with different environmental conditions (light and fertilization treatments), and evaluated these patterns with respect to reproductive onset. We also evaluated if trait covariation along a within-genotype plant-size LES differed from a within-genotype environmental LES defined with trait data from coffee growing in different environmental conditions. Key Results Leaf economics traits related to resource acquisition – maximum photosynthetic rates (A) and mass-based leaf nitrogen (N) concentrations – declined linearly with plant size. Structural traits – leaf mass, leaf thickness, and leaf mass per unit area (LMA) – and leaf area increased with plant size beyond reproductive onset, then declined in larger plants. Three primary LES traits (mass-based A, leaf N and LMA) covaried across a within-genotype plant-size LES, with plants moving towards the ‘resource-conserving’ end of the LES as they grow larger; in coffee these patterns were nearly identical to a within-genotype environmental LES. Conclusions Our results demonstrate that a plant-size LES exists within a single genotype. Our findings indicate that in managed agroecosystems where resource availability is high the role of reproductive onset in driving within-genotype trait variability, and the strength of covariation and trade-offs among LES traits, are less pronounced compared with plants in natural systems. The consistency in trait covariation in coffee along both plant-size and environmental LES axes indicates strong constraints on leaf form and function that exist within plant genotypes.
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Christoffersen, Bradley O., Manuel Gloor, Sophie Fauset, Nikolaos M. Fyllas, David R. Galbraith, Timothy R. Baker, Bart Kruijt, et al. "Linking hydraulic traits to tropical forest function in a size-structured and trait-driven model (TFS v.1-Hydro)." Geoscientific Model Development 9, no. 11 (November 24, 2016): 4227–55. http://dx.doi.org/10.5194/gmd-9-4227-2016.

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Abstract. Forest ecosystem models based on heuristic water stress functions poorly predict tropical forest response to drought partly because they do not capture the diversity of hydraulic traits (including variation in tree size) observed in tropical forests. We developed a continuous porous media approach to modeling plant hydraulics in which all parameters of the constitutive equations are biologically interpretable and measurable plant hydraulic traits (e.g., turgor loss point πtlp, bulk elastic modulus ε, hydraulic capacitance Cft, xylem hydraulic conductivity ks,max, water potential at 50 % loss of conductivity for both xylem (P50,x) and stomata (P50,gs), and the leaf : sapwood area ratio Al : As). We embedded this plant hydraulics model within a trait forest simulator (TFS) that models light environments of individual trees and their upper boundary conditions (transpiration), as well as providing a means for parameterizing variation in hydraulic traits among individuals. We synthesized literature and existing databases to parameterize all hydraulic traits as a function of stem and leaf traits, including wood density (WD), leaf mass per area (LMA), and photosynthetic capacity (Amax), and evaluated the coupled model (called TFS v.1-Hydro) predictions, against observed diurnal and seasonal variability in stem and leaf water potential as well as stand-scaled sap flux. Our hydraulic trait synthesis revealed coordination among leaf and xylem hydraulic traits and statistically significant relationships of most hydraulic traits with more easily measured plant traits. Using the most informative empirical trait–trait relationships derived from this synthesis, TFS v.1-Hydro successfully captured individual variation in leaf and stem water potential due to increasing tree size and light environment, with model representation of hydraulic architecture and plant traits exerting primary and secondary controls, respectively, on the fidelity of model predictions. The plant hydraulics model made substantial improvements to simulations of total ecosystem transpiration. Remaining uncertainties and limitations of the trait paradigm for plant hydraulics modeling are highlighted.
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Pierce, Simon, Arianna Bottinelli, Ilaria Bassani, Roberta M. Ceriani, and Bruno E. L. Cerabolini. "How well do seed production traits correlate with leaf traits, whole-plant traits and plant ecological strategies?" Plant Ecology 215, no. 11 (August 10, 2014): 1351–59. http://dx.doi.org/10.1007/s11258-014-0392-1.

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Dissertations / Theses on the topic "Plant traits"

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Santini, Gonzalez Bianca Ariana. "Plant functional traits and vegetation strategies." Thesis, University of Sheffield, 2015. http://etheses.whiterose.ac.uk/12119/.

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In this thesis we tested the predictions from the CSR theory for the community membership. Predictions are that, in the absence of competition, species from all strategies (Competitors, Ruderals and Stress-tolerants) will persist in low-stress habitats, whereas in high-stress habitats, only species with Stress-tolerant traits will survive. CSR recognizes that species evolved similar traits to one universal stress. For this reason, we were interested in testing which strategies will survive in different sources of stress. Our results from field and greenhouse experiments suggest that CSR theory does not predict community membership from the initial stages of a plant life-cycle. Instead, we found that the habitat stress plays a major role in determining the species that are incorporated into a community. In this thesis we also used a trait-based approach to evaluate: 1) the relationship between key traits using annuals species, and 2) the links between genome size and phenotypic variation within species. Firstly, we studied the triangular relationship reported for seed mass and leaf area in woody species. These traits are involved in the plant reproduction strategy and plant water and energy-use. We found a triangular relationship in annuals species, suggesting that is conserved across groups (woody and annuals). We also found that the driver of this relationship is related to soil fertility. Finally, for the relationship between genome size and phenotypic variation within species, we found that larger genome species display higher variation in traits than small genome species. This can be a potential advantage in heterogeneous environments where the amount of phenotypic variation would allow the species to adapt to them.
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Laxton, Emma. "Relationship between leaf traits, insect communities and resource availability." Thesis, Electronic version, 2005. http://hdl.handle.net/1959.14/483.

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Thesis (PhD)--Macquarie University, Division of Environmental and Life Sciences, Dept. of Biological Sciences, 2005.
Bibliography: p. 178-203.
Introduction -- Study sites -- Leaf characteristics and resource availability -- Insect herbivory and resource availability -- Insect communities and resource availability -- Influence of resource availability on recovery from herbivory -- Conclusions.
This project used the resource availability hypothesis (Coley et al., 1985) as a framework for investigating the relationship between resource availability (as defined by soil nutrients), leaf traits, insect herbivore damage and insect community structure. According to the hypothesis, plants from low resource environments should be better-defended, have longer leaf lifespans and slower growth rates than plants from higher resource environments. Higher resource plant species are expected to suffer higher levels of herbivory and recover faster from herbivory than low resource plant species (Coley et al. 1985). A corollary to this hypothesis is that plants from higher resource sites should support greater densities of insect herbivores than low resource species. Comparisons between high and low resource sites were made in terms of: (i) leaf traits of mature and immature leaves; (ii) phenology of leaf maturation; (iii) herbivore damage in the field and laboratory; (iv) diversity and abundance of herbivorous insect fauna; and (v) ability to recover from herbivory.
Mode of access: World Wide Web.
243 p. ill., maps
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Varga, S. (Sandra). "Significance of plant gender and mycorrhizal symbiosis in plant life history traits." Doctoral thesis, University of Oulu, 2010. http://urn.fi/urn:isbn:9789514261398.

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Abstract Most plants grow in association with arbuscular mycorrhizal (AM) fungi in their roots forming the so-called AM symbiosis. AM symbiosis is usually beneficial to the host as it improves plant survival and performance. However, AM symbiosis also entails a cost to the plant in terms of the carbon allocated to the fungus. In sexually dimorphic plants, more than one type of individual can be recognised with regard to their sexual expression or gender. The cost of reproduction in these plants will differ in relation to the relative investment in male versus female function, as the female and the male sexual functions incur different costs. This different cost of reproduction may be translated into differences in other plant functions between the sexes as all functions are connected through trade-offs. Therefore, since sexes differ in resource needs and allocation patterns, and AM mediate resource acquisition and allocation patterns through imposing both costs and benefits to the plant, the sexes of dimorphic plant species may possess, at least theoretically, a different relationship with their AM roots symbionts. In this thesis, I have investigated whether the sexes in sexually dimorphic plant species differ in their mycorrhizal relationship, and if so, in which ways. Several plant life history traits were studied in the dioecious species Antennaria dioica and also in the gynodioecious Geranium sylvaticum using greenhouse, common-garden and field experiments. Resource acquisition, resource allocation, and both plant and fungal benefits from AM symbiosis were considered. Mainly beneficial effects of AM symbiosis were observed in both sexes of the two dimorphic plant species for most of the studied plant life history traits. Overall, both partners benefited from the AM association. However, several sex-specific benefits were detected which were not uniformly present in all experiments for any given trait. Moreover, the responses observed in certain life history traits were dependent on both the AM fungal and plant species involved in the symbiosis. Remarkably, plants gained sex-specific benefits from the same species of AM fungi and the fungal benefit differed depending on the sex of the host plant. In addition, mycorrhizal benefits were lost under certain environmental conditions. To summarise, the results obtained in this study highlight the complexity of AM interactions. My results suggest that the plant-mycorrhizal fungus relationship may differ depending on the sex of the host plant. Through sex-specific effects on survival, growth and reproduction of the hosts, AM fungi may play a role in the evolution of the life histories in the studied species. In addition, sex-specific relationships between plants and their mycorrhizal symbionts may have potential important consequences for the population dynamics of the sexual morphs and the coevolution of the mycorrhizal relationship.
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Eggers, Ben. "Identifying phenotypic traits critical for breeding winter malting barley adapted to Ohio and the genomic regions affecting those traits." The Ohio State University, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=osu1607035449218475.

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Scharfy, Deborah. "Exotic plant invasions : importance of functional traits for soil characteristics and plant-soil feedback /." [S.l.] : [s.n.], 2009. http://e-collection.ethbib.ethz.ch/show?type=diss&nr=18308.

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Lepers, Clotilde. "Pollinators : demanding partners : Investigating the interplay between plant-pollinator interactions and plant traits evolution." Thesis, Lille 1, 2015. http://www.theses.fr/2015LIL10188/document.

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La grande majorité des plantes à fleurs se reproduisent grâce à leurs pollinisateurs. L’évolution chez les plantes est pourtant souvent étudiée sans prendre en compte ces interactions, et cette thèse vise à mieux comprendre leur impact sur l’évolution des plantes. Dans un premier chapitre, je présenterai les effets connus des pollinisateurs sur le taux d’autofécondation des plantes et sur son évolution. Dans un second chapitre, j’ai modélisé l’évolution du taux d’autofécondation des plantes lorsque celui-ci affecte la démographie des plantes et des pollinisateurs, et l’investissement des plantes dans la pollinisation. Cette étude montre que l’évolution vers l’autofécondation peut mener à l’extinction des plantes. Dans un troisième chapitre, je m’intéresserai à l’évolution des caractéristiques florales pour des espèces qui dépendent obligatoirement du transfert de pollen entre individus : les espèces dioïques. Cette étude montre que l’attractivité des plantes peut évoluer différemment chez les individus mâles et femelles, surtout dans les grandes populations qui subissent peu de limitation en pollen. Ce résultat suggère que le dimorphisme sexuel ne menacerait pas le maintien des populations dioïques. Enfin, même si elles prennent en compte les pollinisateurs de manière sommaire, les études précédentes ont montré leur importance pour la démographie et l’évolution chez les plantes. La dernière étude de cette thèse a donc pour but de mieux décrire et quantifier les mécanismes sous-jacents au comportement du pollinisateur, en particulier concernant l’impact des traits floraux. Elle permettra une meilleure intégration des interactions plantes-pollinisateurs dans les modèles
The mode of pollination is often neglected regarding the evolution of plant traits, although the reproduction of most flowering plants is based on their interactions with pollinators. This thesis aims at a better understanding of the interplay between animal-pollination and the evolution of plant traits. First, I will present a detailed review on the interplay between plant mating system and pollinator behavior, which highlights the impact of pollinators on the immediate ecological selfing rate and on its evolution. Second, I modeled the evolution of plant selfing rate when it affects both the demography of plants and pollinators and the investment of plants in pollination. This study provides new theoretical evidence that evolution towards selfing can lead to an evolutionary suicide in some conditions. Third, I will present a modeling analysis of the impact of animal-pollination for species that compulsorily rely on outcross pollination: entomophilous dioecious species. This study revealed that under pollinator-mediated selection, attractiveness of males and females should evolve in large populations that do not suffer from pollen limitation. This result suggests that dimorphism may not be a threat for dioecious populations. Finally, although the previous models integrated pollinators in a basic way, they highlighted strong interplays between pollinators, plant demography, and the evolution of plant traits. The last study of this thesis, aims at defining and quantifying the mechanisms underlying pollinator foraging behavior, and especially the impact of plants floral traits on pollen transfer. This would allow for a better modeling of plant-pollinators interactions
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Zukswert, Jenna Michelle. "How well do plant functional traits and leaf-litter traits predict rates of litter decomposition?" Thesis, University of British Columbia, 2016. http://hdl.handle.net/2429/57698.

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Foliar functional traits have been shown to strongly co-vary with each other and with rates of litter decomposition, demonstrating an “after-life effect” of foliar traits on ecosystem processes. Leaf-litter traits are often used to indicate substrate quality in decomposition studies. Chemical traits have been studied more extensively in the context of decomposition than physical traits such as specific leaf area (SLA) and leaf toughness, which impart information on litter structure and decomposer access. I investigated relationships among foliar and litter traits, and between traits and early mass-loss, in 14 plant species native to British Columbia. Both physical and chemical traits were measured in foliage and leaf litter of each species. Foliar traits novel to this kind of study include cuticle thickness and distance to lumen (DTL); novel litter traits include leaching loss and water uptake after 2 and 24 hours. Decomposition, as net proportion of mass lost over time, was measured in litterbags installed in a temperate rain forest at the University of British Columbia Farm in Vancouver. Mass loss was divided into two phases: Phase I from 0 to 3 months, and Phase II from 3 to 12 months. Foliar traits co-varied in ways predicted by the leaf economics spectrum hypothesis, and litter traits similarly co-varied. Trait-based relationships among species differed when using foliar traits and using litter traits, suggesting that the same traits measured in foliar and litter impart different meaning in the context of decomposition. Phase I was best predicted by leaching loss and litter traits, suggesting that leaching dominates Phase I, and Phase II was best predicted by foliar functional traits such as leaf dry matter content and nitrogen that relate to relative mesophyll abundance, suggesting that decomposer activity dominates Phase II. Physical traits predicted mass loss as well or better than chemical traits, and using both types of traits in correlative studies may provide insights into the processes that underlie litter decomposition.
Forestry, Faculty of
Graduate
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Smitchger, Jamin A. "Quantitative Trait Loci Associated with Lodging, Stem Strength, Yield, and Other Important Agronomic Traits in Dry Field Peas." Thesis, Montana State University, 2017. http://pqdtopen.proquest.com/#viewpdf?dispub=10607937.

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In pea, lodging changes canopy structure, increases disease pressure, reduces yield, and reduces harvest efficiency. In order to discover the quantitative trait loci (QTLs) influencing lodging resistance and other important agronomic traits in pea, a recombinant inbred line (RIL) population was created from a relatively wide cross between the commercial variety Delta and an unnamed pea variety. The RIL population was grown for 6 site-years in Bozeman and Moccasin, MT, USA, and phenotypic data was collected for 22 quantitative morphological traits and seven categorical traits which were thought to be associated with lodging resistance. Genotypic data was derived from genotype by sequencing, microsattelite markers, and cleaved amplified sequence tagged sites.

QTL analysis identified a total of 135 putative QTLs for the 22 traits examined in the study. There were 12 specific regions where 115 QTLs co-located, indicating that as few as 12 genes may be responsible for multiple pleiotropic effects. Ten QTLs were found for lodging resistance. Due to the large amount of phenotypic data collected, the putative mechanism of lodging resistance was determined for each QTL. In nearly every case, lodging resistance was associated with reduced plant height, a change in tendril number, or increased stem strength. This conclusion was supported by mathematical modeling. Branch number, which determines the number of tendrils per plant, was also positively associated with lodging resistance during all site-years, indicating that increasing tendril number also increases lodging resistance.

Yield was controlled by eight QTLs. All QTLs for yield had pleiotropic effects on lodging resistance and yield per plant. Seed size was not correlated with yield, and a model was created which explained why no association between yield and seed size was found.

The pleiotropic effects and utility of the QTLs discovered in this study are discussed. The results of this study further refine the ideotype for pea, and can be used for marker assisted selection in this crop.

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Nielsen, Kristin Norma Astrid Toftgaard. "Predicting competitive ability from plant traits: A comparative study of 63 terrestrial herbaceous plant species." Thesis, University of Ottawa (Canada), 1995. http://hdl.handle.net/10393/10227.

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There is critical need for studies on interspecific competition which enable general principles to be deduced that apply beyond the species and conditions of a particular study or site. Studies on plant traits are a key part of this search for general principles. I measured relative competitive ability in 63 terrestrial herbaceous plant species using the phytometer Trichostema brachiatum, to test whether competitive ability can be predicted from simple measurable plant traits. The test species utilised in this experiment represented a wide array of terrestrial vegetation types (e.g. rock. barrens, alvars, old fields), and an array of growth forms, from small rosette species (e.g. Saxifraga virginiensis) to large clonal graminoids (e.g. Agropyron repens). The experiment was carried out under both a "normal" and a "drought" treatment. Multiple linear regression showed that there was a strong relationship between plant traits and competitive ability (Normal treatment--r$\sp2$ = 0.54; Drought--treatment r$\sp2$ = 0.55). Total plant biomass explained 34% of the variation in competitive ability in the normal treatment and below-ground biomass explained 35% of the variation in the drought treatment. Leaf shape explained most of the residual variation. The competitive hierarchy for plants in the normal and drought treatment was compared. Rankings for individual species varied between treatments, however, when all species were compared simultaneously, competitive hierarchies in both treatments were highly correlated (r$\sb{\rm s}$ = 0.91). This suggests that invariant and variant views of competitive hierarchies are not mutually exclusive but instead depend on the scale at which competition is being addressed. On the broad scale, relative competitive abilities appear consistent across different environments. Thus, both traits and hierarchies show general repeatable patterns that allow us to generalize from one set of circumstances to another.
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Read, Jonathan M. "The effect of plant traits and resource supply characteristics on plant competition : a mechanistic model." Thesis, University of Stirling, 1996. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.244695.

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Books on the topic "Plant traits"

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Breeding for quantitative traits in plants. Woodbury, Minn: Stemma Press, 2002.

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Bernardo, Rex Novero. Breeding for quantitative traits in plants. 2nd ed. Woodbury, Minn: Stemma Press, 2010.

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Kumar, Manoj, Annamalai Muthusamy, Vivek Kumar, and Neera Bhalla-Sarin, eds. In vitro Plant Breeding towards Novel Agronomic Traits. Singapore: Springer Singapore, 2019. http://dx.doi.org/10.1007/978-981-32-9824-8.

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service), SpringerLink (Online, ed. Plant Biodiversity in Urbanized Areas: Plant Functional Traits in Space and Time, Plant Rarity and Phylogenetic Diversity. Wiesbaden: Vieweg+Teubner Verlag / GWV Fachverlage GmbH, Wiesbaden, 2010.

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service), ScienceDirect (Online, ed. Computational methods for genetics of complex traits. London: Academic Press, 2010.

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Al-Khayri, Jameel M., Shri Mohan Jain, and Dennis V. Johnson, eds. Advances in Plant Breeding Strategies: Agronomic, Abiotic and Biotic Stress Traits. Cham: Springer International Publishing, 2016. http://dx.doi.org/10.1007/978-3-319-22518-0.

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From plant traits to vegetation structure: Chance and selection in the assembly of ecological communities. Cambridge: Cambridge University Press, 2010.

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Wales), New Phytologist Symposium (2nd 1997 University of. Putting plant physiology on the map: Genetic analysis of developmental and adaptive traits : proceedings of the second New Phytologist Symposium, University of Wales Bangor, April 1997. Cambridge: Published for the New Phytologist Trust by Cambridge University Press, 1997.

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McGuirk, Martin J. Realistic track plans for O gauge trains. Waukesha, WI: Kalmbach Books, 1997.

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Dewasne, Jean. Traité d'une peinture plane et autres récits. [Paris]: Minerve, 2007.

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Book chapters on the topic "Plant traits"

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Maiti, Ratikanta, Humberto Gonzalez-Rodriguez, and Theodore Karfakis. "Plant traits." In Autoecology and ecophysiology of woody shrubs and trees, 42–73. Chichester, UK: John Wiley & Sons, Ltd, 2016. http://dx.doi.org/10.1002/9781119104452.ch5.

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Singh, J. S., and R. K. Chaturvedi. "Plant Traits and Regeneration." In Tropical Dry Deciduous Forest: Research Trends and Emerging Features, 69–110. Singapore: Springer Singapore, 2017. http://dx.doi.org/10.1007/978-981-10-7260-4_4.

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Miao, Han, and Yue Peng. "Mapping for Quality Traits." In Compendium of Plant Genomes, 93–103. Cham: Springer International Publishing, 2021. http://dx.doi.org/10.1007/978-3-030-88647-9_8.

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Gupta, V. P., G. S. Nanda, and Darbeshwar Roy. "Selection for Simple and Complex Traits." In Plant Breeding, 373–89. Dordrecht: Springer Netherlands, 2004. http://dx.doi.org/10.1007/978-94-007-1040-5_15.

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Yan, Weikai, and Donald H. Wallace. "Breeding for Negatively Associated Traits." In Plant Breeding Reviews, 141–77. Oxford, UK: John Wiley & Sons, Inc., 2010. http://dx.doi.org/10.1002/9780470650059.ch4.

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Bos, Izak, and Peter Caligari. "Selection for several traits." In Selection Methods in Plant Breeding, 222–43. Dordrecht: Springer Netherlands, 1995. http://dx.doi.org/10.1007/978-94-015-8432-6_12.

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Chimungu, Joseph G., and Jonathan P. Lynch. "Root Traits for Improving Nitrogen Acquisition Efficiency." In Plant Biotechnology, 181–92. Cham: Springer International Publishing, 2014. http://dx.doi.org/10.1007/978-3-319-06892-3_15.

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Schneider, Hannah M., and Jonathan P. Lynch. "Root Traits for Improving N Acquisition Efficiency." In Plant Biotechnology, 163–80. Cham: Springer International Publishing, 2021. http://dx.doi.org/10.1007/978-3-030-68345-0_12.

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Friesen, Maren L. "Microbially Mediated Plant Functional Traits." In Molecular Microbial Ecology of the Rhizosphere, 87–102. Hoboken, NJ, USA: John Wiley & Sons, Inc., 2013. http://dx.doi.org/10.1002/9781118297674.ch8.

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Falińska, Krystyna. "Plant Traits and Species Turnover." In Tasks for vegetation science, 60–66. Dordrecht: Springer Netherlands, 1991. http://dx.doi.org/10.1007/978-94-011-3266-4_8.

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Conference papers on the topic "Plant traits"

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"Marker-trait associations for agronomic traits in soybean harvested in Kazakhstan." In Plant Genetics, Genomics, Bioinformatics, and Biotechnology. Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, 2019. http://dx.doi.org/10.18699/plantgen2019-213.

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Будак, Александр, and Олег Харчук. "Изучение влияния условий года и генотипа на вариабельность и наследуемость количественного признака высота растения и связанных с ним признаков у сои." In International Scientific Symposium "Plant Protection – Achievements and Prospects". Institute of Genetics, Physiology and Plant Protection, Republic of Moldova, 2020. http://dx.doi.org/10.53040/9789975347204.76.

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The variability of traits is the height of the plant and the average length of the internode to a greater extent influenced by the genotype. The good heritability of these traits is evidenced by the high heritability rates for these traits. The variability of the attachment height of the lower pod is more influenced by the conditions of the year, the heritability coefficient is lower than that of the previous traits. Genetic progress is the highest (40.33%) among the studied traits in the trait with an average internode length, which indicates that selection for this trait may be the most successful.
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"Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotypes." In International Conference on Knowledge Engineering and Ontology Development. SciTePress - Science and and Technology Publications, 2012. http://dx.doi.org/10.5220/0004138302200225.

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"Marker-trait associations for barley grain quality traits identified in Karaganda and Kostanay regions using GWAS." In Plant Genetics, Genomics, Bioinformatics, and Biotechnology. Novosibirsk ICG SB RAS 2021, 2021. http://dx.doi.org/10.18699/plantgen2021-063.

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Kattenborn, Teja, Javier Lopatin, Fabian Fassnacht, and Sebastian Schmidtlein. "Linking plant strategies (CSR) and remotely sensed plant traits." In 2016 8th Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (WHISPERS). IEEE, 2016. http://dx.doi.org/10.1109/whispers.2016.8071809.

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Grigorov, Tatiana. "Variabilitatea caracterelor biomorfologice la mutantul calcaroides de orz de primăvară în generațiile M3-M7." In VIIth International Scientific Conference “Genetics, Physiology and Plant Breeding”. Institute of Genetics, Physiology and Plant Protection, Republic of Moldova, 2021. http://dx.doi.org/10.53040/gppb7.2021.39.

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The variability of quantitative traits (plant height, spike length, apical internode length, number of spikelets and grains per spike, number of productive tillers per plant) in barley calcaroides mutant of cv. Sonor induced by gamma rays (250 Gy) has been studied. The analysis of variance showed that year condi-tions were mainly responsible (10.59 to 46.96%) for variation of studied traits, followed by the genotype (1.48 to 20.5%) and the interaction of these factors (1.94 to 8.64%), with only one exception for number of grains per spike. Variation of this trait depends mostly on genotype factors. The mean values of all studied traits of mutant form were lower than of Sonor variety. This morphological mutant has a scientific importance.
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"GWAS between flax accessions and agronomically important phenotypic traits." In Plant Genetics, Genomics, Bioinformatics, and Biotechnology. Novosibirsk ICG SB RAS 2021, 2021. http://dx.doi.org/10.18699/plantgen2021-192.

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Chen, Yuhao, Javier Ribera, Christopher Boomsma, and Edward J. Delp. "Plant leaf segmentation for estimating phenotypic traits." In 2017 IEEE International Conference on Image Processing (ICIP). IEEE, 2017. http://dx.doi.org/10.1109/icip.2017.8297010.

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"Association mapping of quantitative trait loci for agronomic traits in spring wheat collection tested under two water regimes in Northern Kazakhstan." In Plant Genetics, Genomics, Bioinformatics, and Biotechnology. Novosibirsk ICG SB RAS 2021, 2021. http://dx.doi.org/10.18699/plantgen2021-007.

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"Association mapping of agronomically important traits in Russian collection of rapeseed." In Plant Genetics, Genomics, Bioinformatics, and Biotechnology. Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, 2019. http://dx.doi.org/10.18699/plantgen2019-066.

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Reports on the topic "Plant traits"

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Kapulnik, Yoram, Maria J. Harrison, Hinanit Koltai, and Joseph Hershenhorn. Targeting of Strigolacatones Associated Pathways for Conferring Orobanche Resistant Traits in Tomato and Medicago. United States Department of Agriculture, July 2011. http://dx.doi.org/10.32747/2011.7593399.bard.

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This proposal is focused on examination of two plant interactions: parasitic with Orobanche, and symbiosis with arbuscular mycorrhiza fungi (AMF), and the involvement of a newly define plant hormones, strigolactones (SLs), in these plant interactions. In addition to strigolactones role in regulation of above-ground plant architecture, they are also known to be secreted from roots, and to be a signal for seed germination of the parasitic plants Orobanche. Moreover, secreted strigolactones were recognized as inducers of AMFhyphae branching. The present work was aimed at Generation of RNAi mutants of both tomato and Medicago, targeting multiple genes that may be involved in strigolactone production, carotenoid biosynthesis pathway, Pi signaling or other metabolic pathways, and hence affect AMF colonization and/or Orobanche resistance. Following the newly formed and existing RNAi mutants were examined for AMF colonization and Orobanche resistance. At the first phase of this project Orobanche seed germination assays and AMF colonization were examined in intact plants. These assays were shown to be effective and resulted with enhancement of Orobanche seed germination and AMF colonization in WT tomato plants, whereas roots of strigolactones impaired lines did not result with Orobanche seed germination and mycorrhiza colonization. Unexpectedly, root organ cultures (ROC) that were produced from the same wild type (WT) and mutant lines did not induce the Orobanche seed germination and AMFhyphal branching. This implies that under in vitro conditions ROC cultures are missing an important component for induction of Orobanche seed germination and AMFhyphal branching. In another line of experiments we have tested transgenic lines of Medicagotruncatula for AMFhuyphal branching and Orobanche seed germination assays. These lines included lines silenced for a GRAS transcription factor (RNAi 1845), an NBS-LRR type resistance gene (RNAi 1847), a kinase (RNAi 2403) and a protein of unknown function (RNAi 2417). In all cases, five independent transgenic root lines showed altered AMFphenotypes with reduced or aberrant colonization patterns. Following, we transformed tomato plants with the M. truncatulaTC 127050 PhosphoinositidekinaseRNAi construct. Transgenic lines that contained GUS constructs were used as control. All transgenic lines showed reduced level of Orobanche seed germination, masking any strigoalctones-specific effect. The research demonstrated that SLs production may not be examined in ROC –based bioassays. It was shown by the 3 independent assays employed in this project that none of the recognized characters of SLs may be reflected in these bioassays. However, when the whole plant root exudates were examined, SLs activity in root exudates was demonstrated. Hence, it can be concluded that the presence of an intact shoot, and possibly, shoot factors, may be necessary for production of SLs in roots. Another point of interest that rises from these results is that the presence of SLs is not necessary for AMF completion of life cycle. Hence, it may be concluded that SLs are important for AMFhyphal branching, before symbiosis, but not essential for AMF colonization and life cycle completion under ROC system conditions.
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Moore, Gloria A., Gozal Ben-Hayyim, Charles L. Guy, and Doron Holland. Mapping Quantitative Trait Loci in the Woody Perennial Plant Genus Citrus. United States Department of Agriculture, May 1995. http://dx.doi.org/10.32747/1995.7570565.bard.

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As is true for all crops, production of Citrus fruit is limited by traits whose characteristics are the products of many genes (i.e. cold hardiness). In order to modify these traits by marker aided selection or molecular genetic techniques, it is first necessary to map the relevant genes. Mapping of quantitative trait loci (QTLs) in perennial plants has been extremely difficult, requiring large numbers of mature plants. Production of suitable mapping populations has been inhibited by aspects of reproductive biology (e.g. incompatibility, apomixis) and delayed by juvenility. New approaches promise to overcome some of these obstacles. The overall objective of this project was to determine whether QTLs for environmental stress tolerance could be effectively mapped in the perennial crop Citrus, using an extensive linkage map consisting of various types of molecular markers. Specific objectives were to: 1) Produce a highly saturated genetic linkage map of Citrus by continuing to place molecular markers of several types on the map. 2) Exploiting recently developed technology and already characterized parental types, determine whether QTLs governing cold acclimation can be mapped using very young seedling populations. 3) Determine whether the same strategy can be transferred to a different situation by mapping QTLs influencing Na+ and C1- exclusion (likely components of salinity tolerance) in the already characterized cross and in new alternative crosses. 4) Construct a YAC library of the citrus genome for future mapping and cloning.
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van de Wiel, C. C. M., L. A. P. Lotz, H. C. M. de Bakker, and M. J. M. Smulders. Intellectual property rights and native traits in plant breeding : a quick scan of patents involving products of conventional plantbreeding. Wageningen: Wageningen UR Plant Breeding, 2016. http://dx.doi.org/10.18174/382232.

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Lindow, Steven, Isaac Barash, and Shulamit Manulis. Relationship of Genes Conferring Epiphytic Fitness and Internal Multiplication in Plants in Erwinia herbicola. United States Department of Agriculture, July 2000. http://dx.doi.org/10.32747/2000.7573065.bard.

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Most bacterial plant pathogens colonize the surface of healthy plants as epiphytes before colonizing internally and initiating disease. The epiphytic phase of these pathogens is thus an important aspect of their epidemiology and a stage at which chemical and biological control is aimed. However, little is known of the genes and phenotypes that contribute to the ability of bacteria to grow on leaves and survive the variable physical environment in this habitat. In addition, while genes such as hrp awr and others which confer pathogenicity and in planta growth ability have been described, their contribution to other aspects of bacterial epidemiology such as epiphytic fitness have not been addressed. We hypothesized that bacterial genes conferring virulence or pathogenicity to plants also contribute to the epiphytic fitness of these bacteria and that many of these genes are preferentially located on plasmids. We addressed these hypotheses by independently identifying genes that contribute to epiphytic fitness, in planta growth, virulence and pathogenicity in the phytopathogenic bacterium Erwinia herbicola pv gypsophilae which causes gall formation on gypsophila. This species is highly epiphytically fit and has acquired a plasmid (pPATH) that contains numerous pathogenicity and virulence determinants, which we have found to also contribute to epiphytic fitness. We performed saturation transposon mutagenesis on pPATH as well as of the chromosome of E.h. gypsophilae, and identified mutants with reduced ability to grow in plants and/or cause disease symptoms, and through a novel competition assay, identified mutants less able to grow or survive on leaves. The number and identity of plasmid-borne hrp genes required for virulence was determined from an analysis of pPATH mutants, and the functional role of these genes in virulence was demonstrated. Likewise, other pPATH-encoded genes involved in IAA and cytokinin biosynthesis were characterized and their pattern of transcriptional activity was determined in planta. In both cases these genes involved in virulence were found to be induced in plant apoplasts. About half of avirulent mutants in pPATH were also epiphytically unfit whereas only about 10% of chromosomal mutants that were avirulent also had reduced epiphytic fitness. About 18% of random mutants in pPATH were avirulent in contrast to only 2.5% of random chromosomal mutants. Importantly, as many as 28% of pPATH mutants had lower epiphytic fitness while only about 10% of random chromosomal mutants had lower epiphytic fitness. These results support both of our original hypotheses, and indicate that genes important in a variety of interactions with plant have been enriched on mobile plasmids such as pPATH. The results also suggest that the ability of bacteria to colonize the surface of plants and to initiate infections in the interior of plants involves many of the same traits. These traits also appear to be under strong regulatory control, being expressed in response to the plant environment in many cases. It may be possible to alter the pattern of expression of such genes by altering the chemical environment of plants either by genetic means or by additional or chemical antagonists of the plant signals. The many novel bacterial genes identified in this study that are involved in plant interactions should be useful in further understanding of bacterial plant interactions.
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Fridman, Eyal, Jianming Yu, and Rivka Elbaum. Combining diversity within Sorghum bicolor for genomic and fine mapping of intra-allelic interactions underlying heterosis. United States Department of Agriculture, January 2012. http://dx.doi.org/10.32747/2012.7597925.bard.

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Heterosis, the enigmatic phenomenon in which whole genome heterozygous hybrids demonstrate superior fitness compared to their homozygous parents, is the main cornerstone of modern crop plant breeding. One explanation for this non-additive inheritance of hybrids is interaction of alleles within the same locus. This proposal aims at screening, identifying and investigating heterosis trait loci (HTL) for different yield traits by implementing a novel integrated mapping approach in Sorghum bicolor as a model for other crop plants. Originally, the general goal of this research was to perform a genetic dissection of heterosis in a diallel built from a set of Sorghum bicolor inbred lines. This was conducted by implementing a novel computational algorithm which aims at associating between specific heterozygosity found among hybrids with heterotic variation for different agronomic traits. The initial goals of the research are: (i) Perform genotype by sequencing (GBS) of the founder lines (ii) To evaluate the heterotic variation found in the diallel by performing field trails and measurements in the field (iii) To perform QTL analysis for identifying heterotic trait loci (HTL) (iv) to validate candidate HTL by testing the quantitative mode of inheritance in F2 populations, and (v) To identify candidate HTL in NAM founder lines and fine map these loci by test-cross selected RIL derived from these founders. The genetic mapping was initially achieved with app. 100 SSR markers, and later the founder lines were genotyped by sequencing. In addition to the original proposed research we have added two additional populations that were utilized to further develop the HTL mapping approach; (1) A diallel of budding yeast (Saccharomyces cerevisiae) that was tested for heterosis of doubling time, and (2) a recombinant inbred line population of Sorghum bicolor that allowed testing in the field and in more depth the contribution of heterosis to plant height, as well as to achieve novel simulation for predicting dominant and additive effects in tightly linked loci on pseudooverdominance. There are several conclusions relevant to crop plants in general and to sorghum breeding and biology in particular: (i) heterosis for reproductive (1), vegetative (2) and metabolic phenotypes is predominantly achieved via dominance complementation. (ii) most loci that seems to be inherited as overdominant are in fact achieving superior phenotype of the heterozygous due to linkage in repulsion, namely by pseudooverdominant mechanism. Our computer simulations show that such repulsion linkage could influence QTL detection and estimation of effect in segregating populations. (iii) A new height QTL (qHT7.1) was identified near the genomic region harboring the known auxin transporter Dw3 in sorghum, and its genetic dissection in RIL population demonstrated that it affects both the upper and lower parts of the plant, whereas Dw3 affects only the part below the flag leaf. (iv) HTL mapping for grain nitrogen content in sorghum grains has identified several candidate genes that regulate this trait, including several putative nitrate transporters and a transcription factor belonging to the no-apical meristem (NAC)-like large gene family. This activity was combined with another BARD-funded project in which several de-novo mutants in this gene were identified for functional analysis.
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Waisel, Yoav, Bobbie McMichael, and Amram Eshel. Decision Making within Plant Root Systems. United States Department of Agriculture, March 1996. http://dx.doi.org/10.32747/1996.7613030.bard.

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Architecture of a root system is the expression of the potential of various root types to branch, to grow and to coordinate with other plant organs, under the specific limitations of the environmental conditions. The present investigation has proven the following points. 1) Genotypes with different types of root systems were identified. The growth patterns of their roots and the distribution of laterals along their main axes were recorded. 2) The patterns of development of the root systems of four cotton genotypes, throughout the entire life cycle of the plants, were described, even at such a late stage of development when the total length of the roots exceeded two kilometers. To the best of our knowledge, this is the first time that an analysis of this type is accomplished. 3) The development of root systems under restrictive soil conditions were compared with those that have developed under the non-restrictive conditions of aeroponics. Results indicate that in the absence of the mechanical impedance of the soil, cotton plants develop single roots that reach the length of 6 m, and have a total root length of 2000 m. Thus, root growth is strongly inhibited by the soil, with some root types being inhibited more than others. 4) One of the important decisions, in constructing an operational root system architecture of mature plants, is the shift of the balance between various root fractions in favor of the very fine roots. 5) Root system architecture is determined, in part, by the sites of initiation of the lateral roots. This is determined genetically by the number of xylem archs and by the totuosity of the stele. Selection for such traits should be sought.
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Granot, David, Richard Amasino, and Avner Silber. Mutual effects of hexose phosphorylation enzymes and phosphorous on plant development. United States Department of Agriculture, January 2006. http://dx.doi.org/10.32747/2006.7587223.bard.

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Research objectives 1) Analyze the combined effects of hexose phosphorylation and P level in tomato and Arabidopsis plants 2) Analyze the combined effects of hexose phosphorylation and P level in pho1 and pho2 Arabidopsis mutants 3) Clone and analyze the PHO2 gene 4) Select Arabidopsis mutants resistant to high and low P 5) Analyze the Arabidopsis mutants and clone the corresponding genes 6) Survey wild tomato species for growth characteristics at various P levels Background to the topic Hexose phosphorylating enzymes, the first enzymes of sugar metabolism, regulate key processes in plants such as photosynthesis, growth, senescence and vascular transport. We have previously discovered that hexose phosphorylating enzymes might regulate these processes as a function of phosphorous (P) concentration, and might accelerate acquisition of P, one of the most limiting nutrients in the soil. These discoveries have opened new avenues to gain fundamental knowledge about the relationship between P, sugar phosphorylation and plant development. Since both hexose phosphorylating enzymes and P levels affect plant development, their interaction is of major importance for agriculture. Due to the acceleration of senescence caused by the combined effects of hexose phosphorylation and P concentration, traits affecting P uptake may have been lost in the course of cultivation in which fertilization with relatively high P (30 mg/L) are commonly used. We therefore intended to survey wild tomato species for high P-acquisition at low P soil levels. Genetic resources with high P-acquisition will serve not only to generate a segregating population to map the trait and clone the gene, but will also provide a means to follow the trait in classical breeding programs. This approach could potentially be applicable for other crops as well. Major conclusions, solutions, achievements Our results confirm the mutual effect of hexose phosphorylating enzymes and P level on plant development. Two major aspects of this mutual effect arose. One is related to P toxicity in which HXK seems to play a major role, and the second is related to the effect of HXK on P concentration in the plant. Using tomato plants we demonstrated that high HXK activity increased leaf P concentration, and induced P toxicity when leaf P concentration increases above a certain high level. These results further support our prediction that the desired trait of high-P acquisition might have been lost in the course of cultivation and might exist in wild species. Indeed, in a survey of wild species we identified tomato species that acquired P and performed better at low P (in the irrigation water) compared to the cultivated Lycopersicon esculentum species. The connection between hexose phosphorylation and P toxicity has also been shown with the P sensitive species VerticordiaplumosaL . in which P toxicity is manifested by accelerated senescence (Silber et al., 2003). In a previous work we uncovered the phenomenon of sugar induced cell death (SICD) in yeast cells. Subsequently we showed that SICD is dependent on the rate of hexose phosphorylation as determined by Arabidopsis thaliana hexokinase. In this study we have shown that hexokinase dependent SICD has many characteristics of programmed cell death (PCD) (Granot et al., 2003). High hexokinase activity accelerates senescence (a PCD process) of tomato plants, which is further enhanced by high P. Hence, hexokinase mediated PCD might be a general phenomena. Botrytis cinerea is a non-specific, necrotrophic pathogen that attacks many plant species, including tomato. Senescing leaves are particularly susceptible to B. cinerea infection and delaying leaf senescence might reduce this susceptibility. It has been suggested that B. cinerea’s mode of action may be based on induction of precocious senescence. Using tomato plants developed in the course of the preceding BARD grant (IS 2894-97) and characterized throughout this research (Swartzberg et al., 2006), we have shown that B. cinerea indeed induces senescence and is inhibited by autoregulated production of cytokinin (Swartzberg et al., submitted). To further determine how hexokinase mediates sugar effects we have analyzed tomato plants that express Arabidopsis HXK1 (AtHXK1) grown at different P levels in the irrigation water. We found that Arabidopsis hexokinase mediates sugar signalling in tomato plants independently of hexose phosphate (Kandel-Kfir et al., submitted). To study which hexokinase is involved in sugar sensing we searched and identified two additional HXK genes in tomato plants (Kandel-Kfir et al., 2006). Tomato plants have two different hexose phosphorylating enzymes; hexokinases (HXKs) that can phosphorylate either glucose or fructose, and fructokinases (FRKs) that specifically phosphorylate fructose. To complete the search for genes encoding hexose phosphorylating enzymes we identified a forth fructokinase gene (FRK) (German et al., 2004). The intracellular localization of the four tomato HXK and four FRK enzymes has been determined using GFP fusion analysis in tobacco protoplasts (Kandel-Kfir et al., 2006; Hilla-Weissler et al., 2006). One of the HXK isozymes and one of the FRK isozymes are located within plastids. The other three HXK isozymes are associated with the mitochondria while the other three FRK isozymes are dispersed in the cytosol. We concluded that HXK and FRK are spatially separated in plant cytoplasm and accordingly might play different metabolic and perhaps signalling roles. We have started to analyze the role of the various HXK and FRK genes in plant development. So far we found that LeFRK2 is required for xylem development (German et al., 2003). Irrigation with different P levels had no effect on the phenotype of LeFRK2 antisense plants. In the course of this research we developed a rapid method for the analysis of zygosity in transgenic plants (German et al., 2003).
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Feldman, Moshe, Eitan Millet, Calvin O. Qualset, and Patrick E. McGuire. Mapping and Tagging by DNA Markers of Wild Emmer Alleles that Improve Quantitative Traits in Common Wheat. United States Department of Agriculture, February 2001. http://dx.doi.org/10.32747/2001.7573081.bard.

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The general goal was to identify, map, and tag, with DNA markers, segments of chromosomes of a wild species (wild emmer wheat, the progenitor of cultivated wheat) determining the number, chromosomal locations, interactions, and effects of genes that control quantitative traits when transferred to a cultivated plant (bread wheat). Slight modifications were introduced and not all objectives could be completed within the human and financial resources available, as noted with the specific objectives listed below: 1. To identify the genetic contribution of each of the available wild emmer chromosome-arm substitution lines (CASLs) in the bread wheat cultivar Bethlehem for quantitative traits, including grain yield and its components and grain protein concentration and yield, and the effect of major loci affecting the quality of end-use products. [The quality of end-use products was not analyzed.] 2. To determine the extent and nature of genetic interactions (epistatic effects) between and within homoeologous groups 1 and 7 for the chromosome arms carrying "wild" and "cultivated" alleles as expressed in grain and protein yields and other quantitative traits. [Two experiments were successful, grain protein concentration could not be measured; data are partially analyzed.] 3. To derive recombinant substitution lines (RSLs) for the chromosome arms of homoeologous groups 1 and 7 that were found previously to promote grain and protein yields of cultivated wheat. [The selection of groups 1 and 7 tons based on grain yield in pot experiments. After project began, it was decided also to derive RSLs for the available arms of homoeologous group 4 (4AS and 4BL), based on the apparent importance of chromosome group 4, based on early field trials of the CASLs.] 4. To characterize the RSLs for quantitative traits as in objective 1 and map and tag chromosome segments producing significant effects (quantitative trait loci, QTLs by RFLP markers. [Producing a large population of RSLs for each chromosome arm and mapping them proved more difficult than anticipated, low numbers of RSLs were obtained for two of the chromosome arms.] 5. To construct recombination genetic maps of chromosomes of homoeologous groups 1 and 7 and to compare them to existing maps of wheat and other cereals [Genetic maps are not complete for homoeologous groups 4 and 7.] The rationale for this project is that wild species have characteristics that would be valuable if transferred to a crop plant. We demonstrated the sequence of chromosome manipulations and genetic tests needed to confirm this potential value and enhance transfer. This research has shown that a wild tetraploid species harbors genetic variability for quantitative traits that is interactive and not simply additive when introduced into a common genetic background. Chromosomal segments from several chromosome arms improve yield and protein in wheat but their effect is presumably enhanced when combination of genes from several segments are integrated into a single genotype in order to achieve the benefits of genes from the wild species. The interaction between these genes and those in the recipient species must be accounted for. The results of this study provide a scientific basis for some of the disappointing results that have historically obtained when using wild species as donors for crop improvement and provide a strategy for further successes.
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Ohad, Nir, and Robert Fischer. Regulation of plant development by polycomb group proteins. United States Department of Agriculture, January 2008. http://dx.doi.org/10.32747/2008.7695858.bard.

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Our genetic and molecular studies have indicated that FIE a WD-repeat Polycomb group (PcG) protein takes part in multi-component protein complexes. We have shown that FIE PcG protein represses inappropriate programs of development during the reproductive and vegetative phases of the Arabidopsis life cycle. Moreover, we have shown that FIE represses the expression of key regulatory genes that promote flowering (AG and LFY), embryogenesis (LEC1), and shoot formation (KNAT1). These results suggest that the FIE PcG protein participates in the formation of distinct PcG complexes that repress inappropriate gene expression at different stages of plant development. PcG complexes modulate chromatin compactness by modifying histones and thereby regulate gene expression and imprinting. The main goals of our original project were to elucidate the biological functions of PcG proteins, and to understand the molecular mechanisms used by FIE PcG complexes to repress the expression of its gene targets. Our results show that the PcG complex acts within the central cell of the female gametophyte to maintain silencing of MEA paternal allele. Further more we uncovered a novel example of self-imprinting mechanism by the PgG complex. Based on results obtained in the cures of our research program we extended our proposed goals and elucidated the role of DME in regulating plant gene imprinting. We discovered that in addition to MEA,DME also imprints two other genes, FWA and FIS2. Activation of FWA and FIS2 coincides with a reduction in 5-methylcytosine in their respective promoters. Since endosperm is a terminally differentiated tissue, the methylation status in the FWA and FIS2 promoters does not need to be reestablished in the following generation. We proposed a “One-Way Control” model to highlight differences between plant and animal genomic imprinting. Thus we conclude that DEMETER is a master regulator of plant gene imprinting. Future studies of DME function will elucidate its role in processes and disease where DNA methylation has a key regulatory role both in plants and animals. Such information will provide valuable insight into developing novel strategies to control and improve agricultural traits and overcome particular human diseases.
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10

Eshed, Yuval, and John Bowman. Harnessing Fine Scale Tuning of Endogenous Plant Regulatory Processes for Manipulation of Organ Growth. United States Department of Agriculture, 2005. http://dx.doi.org/10.32747/2005.7696519.bard.

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Background and objectives: Manipulation of plant organ growth is one of the primary reasons for the success of mankind allowing increasing amounts of food for human and livestock consumption. In contrast with the successful selection for desirable growth characteristics using plant breeding, transgenic manipulations with single genes has met limited success. While breeding is based on accumulation of many small alterations of growth, usually arise from slight changes in expression patterns, transgenic manipulations are primarily based on drastic, non-specific up-regulation or knock down of genes that can exert different effects during different stages of development. To successfully harness transgenic manipulation to attain desirable plant growth traits we require the tools to subtly regulate the temporal and spatial activity of plant growth genes. Polar morphology along the adaxial/abaxial axis characterizes lateral organs of all plants. Juxtaposition of two cell types along this axis is a prerequisite of laminar growth induction. In the study summarized here, we addressed the following questions: Can we identify and harness components of the organ polarity establishment pathway for prolonged growth? Can we identify specific regulatory sequences allowing spatial and temporal manipulation in various stages of organ development? Can we identify genes associated with YABBY-induced growth alterations? Major conclusions and implications: We showed that regulated expression, both spatially and temporally of either organ polarity factors such as the YABBY genes, or the organ maturation program such as the CIN-TCPs can stimulate substantial growth of leaves and floral organs. Promoters for such fine manipulation could be identified by comparison of non-coding sequences of KAN1, where a highly conserved domain was found within the second intron, or by examination of multiple 5” regions of genes showing transient expression along leaf ontogeny. These promoters illustrate the context dependent action of any gene we examined thus far, and facilitate fine tuning of the complex growth process. Implications, both scientific and agricultural. The present study was carried out on the model organism Arabidopsis, and the broad application of its findings were tested in the tomato crop. We learned that all central regulators of organ polarity are functionally conserved, probably in all flowering plants. Thus, with minor modifications, the rules and mechanisms outlined in this work are likely to be general.
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