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Journal articles on the topic 'Plotly library'

Author: Grafiati

Published: 4 June 2025

Last updated: 1 August 2025

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1

Adebanjo, Seun, and Emmanuel Banchani. "Application of Different Python Libraries for Visualisation of Female Genital Mutilation." International Journal of Data Science 4, no. 2 (2023): 67–83. http://dx.doi.org/10.18517/ijods.4.2.67-83.2023.

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Utilizing data visualization facilitates the analysis and comprehension of common data provided by the media, individuals, governments, and other sectors. Python is a well-known programming language that excels at scientific data visualization. This thesis utilizes a variety of Python modules, including Pandas, NumPy, Matplotlib, Seaborn, Plotly, and Bokeh, to illustrate female genital mutilation. The purpose of this thesis is to illustrate female genital mutilation and explain its performance pattern using a complex, interactive diagram that integrates multiple types of Python libraries. In c

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Ergashev, Otabek, Nurillo Mamadaliev, Sardorbek Khonturaev, and Muzaffar Sobirov. "Programming and processing of big data using python language in medicine." E3S Web of Conferences 538 (2024): 02027. http://dx.doi.org/10.1051/e3sconf/202453802027.

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This article is devoted to the use and further application of Python libraries in the medical industry. These libraries include NumPy, Pandas, Scikit-learn, Keras and TensorFlow, Matplotlib, Seaborn, and Plotly. On the example of the Keras library, the problem associated with the use of medical data analysis was considered.

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Schneider, Kevin, Benedikt Venn, and Timo Mühlhaus. "Plotly.NET: A fully featured charting library for .NET programming languages." F1000Research 11 (September 23, 2022): 1094. http://dx.doi.org/10.12688/f1000research.123971.1.

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Data visualization is integral for exploratory data analysis and data presentation. Consequently, every programming environment suitable for data analysis needs a feature-rich visualization library. In this paper, we present Plotly.NET - a fully featured charting library for the .NET ecosystem. Plotly.NET requires little ceremony to use, provides multiple API (application programming interface) layers for both low-code and maximum customizability, and can be used in many different visualization workflows - from interactive scripting and notebooks to user interface applications. Plotly.NET brin

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Schneider, Kevin, Benedikt Venn, and Timo Mühlhaus. "Plotly.NET: A fully featured charting library for .NET programming languages." F1000Research 11 (February 19, 2024): 1094. http://dx.doi.org/10.12688/f1000research.123971.2.

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Data visualization is integral for exploratory data analysis and data presentation. Consequently, every programming environment suitable for data analysis needs a feature-rich visualization library. In this paper, we present Plotly.NET - a fully featured charting library for the .NET ecosystem. Plotly.NET requires little ceremony to use, provides multiple API (application programming interface) layers for both low-code and maximum customizability, and can be used in many different visualization workflows - from interactive scripting and notebooks to user interface applications. Plotly.NET brin

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Yerlekar, Prof Ashwini, Shreyash Urkude, Nisarg Thool, Mrunal Maheshkar, Tushar Gedam, and Subodh Rangari. "Visualising and Forecasting Stock Prices with Flask." International Journal for Research in Applied Science and Engineering Technology 11, no. 4 (2023): 4113–15. http://dx.doi.org/10.22214/ijraset.2023.51207.

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Abstract: Stock price forecasting and visualisation are critical tasks for investors and traders in financial markets. In this project, we have developed a web application that can visualise stock prices of the company in form of charts and predicts future stock prices using machine learning algorithms. The web application is built using Flask(python), a popular web framework, and integrates several APIs and libraries, including News API, Alpha Vantage API, Beautiful Soup (bs4), Pandas, Numpy, Plotly, and Scikit-learn. The application provides users with a basic overview of the company, curren

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Sharov, Sergii, Yurii Sitsylitsyn, Oleksii Naumuk, Dmytro Lubko, and Vira Kolmakova. "Choosing a library for the Python programming language for visualizing the operation of parallel algorithms." E3S Web of Conferences 508 (2024): 03002. http://dx.doi.org/10.1051/e3sconf/202450803002.

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The research compares the capabilities of several libraries for the Python language, which allow creating a test application and visually demonstrate the operation of a parallel program in real time. It was found that the Python language is often used to develop parallel programs with internal and external libraries. To provide multithreading and parallelism, applications created in Python use external libraries, including mpi4py.futures, PETSc for Python, MPI for Python, d2o, Playdoh, PyOMP, and others. Visualization and animation of the operation of parallel programs will help to understand

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Wisna, Nelsi, Aulia Nanda, and Tora Fahrudin. "KLASTERISASI PERUSAHAAN SUB KONTRAKTOR BERDASARKAN RASIO LIKUIDITAS MENGGUNAKAN K-MEANS CLUSTERING." Jurnal Ilmiah Manajemen, Ekonomi, & Akuntansi (MEA) 7, no. 2 (2023): 139–50. http://dx.doi.org/10.31955/mea.v7i2.2994.

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Kemampuan perusahaan melunasi hutang jangka pendek secara cepat merupakan pengertian dari rasio likuiditas. Rasio likuditas yang digunakan dalam penelitian ini yaitu Current Ratio (CR), Quick Ratio (QR) dan Cash Ratio (CaR). Peneliitian ini menggunakan sampel dari perusahaan sub sektor konstruksi yang terdaftar di Bursa Efek Indonesia periode 2019-2021 dan perusahaan yang secara konsisten menerbitkan laporan tahunan. Proses clustering dimulai dengan tahapan awal seleksi hingga tahapan evaluasi dengan tools google colab dalam bahasa pemograman python menggunakan beberapa library seperti numpy,

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Tolstobrov, Ilya M., and Yulia B. Kamalova. "ANALYSIS OF SECTORAL INDICES OF THE USA, CHINA, JAPAN, GERMANY AND INDIA DURING THE FIRST YEAR OF THE INFLUENZA PANDEMIC BASED ON THE KRUSKAL-WALLIS TEST." SOFT MEASUREMENTS AND COMPUTING 3, no. 64 (2023): 58–70. http://dx.doi.org/10.36871/2618-9976.2023.03.005.

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In the work, the movement of the stock market in different countries during the crisis year of 2020 was studied, which did not depend on the decisions made in this country, but obeyed the general trend. In particular, the behavior of sectoral indices of different countries during the first year of the coronavirus was studied and it was concluded that the movement of markets is subject to the global trend. For the analysis, sectoral indices of countries affected to varying degrees by the coronavirus were selected, whose securities markets received various support measures: the United States, Ru

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Wisna, Nelsi, Shafira Aulia Putri Lisna, Tora Fahrudin, and Raswyshnoe Boing Kotjoprayudi. "ANALISIS GROSS PROFIT MARGIN (GPM) DAN NET PROFIT MARGIN (NPM) DENGAN METODE ALGORITMA K-MEANS MENGGUNAKAN BAHASA PEMROGRAMAN PYTHON." Jurnal Ilmiah Manajemen, Ekonomi, & Akuntansi (MEA) 7, no. 2 (2023): 1199–210. http://dx.doi.org/10.31955/mea.v7i2.3121.

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Kemampuan perusahaan dalam menghasilkan laba dan mengukur efektifitas pada manajemen perusahaan adalah pengertian dari rasio profitabilitas. Pada penelitian ini digunakan 15 sampel laporan tahunan perusahaan sub sektor konstruksi yang terdapat pada Bursa Efek Indonesia (BEI) dan terdapat 2 rasio profitabilitas sebagai perhitungan utama yaitu Gross Profit Margin (GPM) dan Net Profit Margin (NPM) menggunakan k-means clustering sebagai metode dalam clustering data. Tujuan dari penelitian ini adalah untuk megkaji tingkat laba perusahaan pada periode 2019-2021. Proses clustering dimulai dengan taha

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Razali, Mulkal, and Risa Wandi. "Inverse Distance Weight Spatial Interpolation for Topographic Surface 3D Modelling." TECHSI - Jurnal Teknik Informatika 11, no. 3 (2019): 385. http://dx.doi.org/10.29103/techsi.v11i3.1934.

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AbstractTopographic modelling is an important aspect in engineering work and planning such as dam design, road planning, volumetric calculation, water flow analysis and so forth. To get topographic data, usually a land survey or topographic measurement is taking for a region or an area under study. A number of points that represent an area are measured to get a height dataset. The dataset which is consist of height points will be used to model topographic condition of the area with generating contour map and also 3D model. There are some methods can be used to generate topographic surface in 3

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Prado, Lílian Moreira do, Tereza Cristina Felippe Guimarães, Isabel Cristina Pacheco da Nóbrega, et al. "Gestão de indicadores de segurança e qualidade na enfermagem cardiovascular: relato de experiência." CONTRIBUCIONES A LAS CIENCIAS SOCIALES 17, no. 13 (2024): e13225. https://doi.org/10.55905/revconv.17n.13-013.

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Objetivo: Relatar a construção de um banco de dados com indicadores de segurança e qualidade de enfermagem ao paciente cardiopata. Métodos: Trata-se de um relato de experiência, dividido em 5 etapas: revisão de literatura, elaboração dos indicadores, validação por especialistas, construção do banco de dados e implementação. As informações coletadas foram adicionadas na plataforma REDCap para gerar os indicadores. Os dados adquiridos foram examinados por método estatístico no software RStudio. Painéis visuais dos indicadores foram elaborados no software Plotly R Library Basic Chart. Parecer do

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V., Bala Dhandayuthapani. "Python Data Analysis and Visualization in Java GUI Applications Through TCP Socket Programming." International Journal of Information Technology and Computer Science 16, no. 3 (2024): 72–92. http://dx.doi.org/10.5815/ijitcs.2024.03.07.

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Python is popular in artificial intelligence (AI) and machine learning (ML) due to its versatility, adaptability, rich libraries, and active community. The existing Python interoperability in Java was investigated using socket programming on a non-graphical user interface (GUI). Python's data analysis library modules such as numpy, pandas, and scipy, together with visualization library modules such as Matplotlib and Seaborn, and Scikit-learn for machine-learning, aim to integrate into Java graphical user interface (GUI) applications such as Java applets, Java Swing, and Java FX. The substantia

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Selli, Alana, Stephen P. Miller, and Ricardo V. Ventura. "The Use of Interactive Visualizations for Tracking Haplotypic Inheritance in Livestock." Ruminants 4, no. 1 (2024): 90–111. http://dx.doi.org/10.3390/ruminants4010006.

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Our objective was to harness the power of interactive visualizations by utilizing open-source tools to develop an efficient strategy for visualizing Single Nucleotide Polymorphism data within a livestock population, focusing on tracking the transmission of haplotypes. To achieve this, we simulated a realistic beef cattle population in order to obtain phased haplotypes and generate the necessary inputs for creating our visualizations. The visualization tool was built using Python and the Plotly library, which enables interactivity. We set out to explore three scenarios: trio comparison, visuali

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Sanskriti, Harmukh, Mishra Mansi, Jain Satyam, Chawda Archit, Prasad Kauleshwar, and Kumar Bhawnani Dinesh. "Forecasting Stock Market Index using Artificial Intelligence." Journal of Advances in Computational Intelligence Theory 4, no. 1 (2022): 1–7. https://doi.org/10.5281/zenodo.6500420.

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<em>In this project, we attempt to implement the most popular Deep Learning technique for Time Series Forecasting since they allow for making reliable predictions on time series in many different problems. Instead of dealing with the data points collected randomly, we are using Time Series model to work upon a sequence of data points at a particular time interval. We are using three major modules to forecast the data, and they are Streamlit, Yahoo Finance, and Facebook Prophet. The user can select the number of years according to their convenience for prediction. The data is collected by yfina

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Panos, Agapios, and Dimitris Mavridis. "TableOne: an online web application and R package for summarising and visualising data." Evidence Based Mental Health 23, no. 3 (2020): 127–30. http://dx.doi.org/10.1136/ebmental-2020-300162.

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ObjectiveTo develop an easy-to-use R package and web application that summarises baseline characteristics across different arms of a clinical trial or different exposures.MethodsTables and figures are the efficient means of visualising, communicating and summarising data. It is common in comparative effectiveness research to provide a synopsis of characteristics and outcomes across the various treatment groups. The popularity of such a table has earned it a name and we simply call it the ‘TableOne’, as it is usually the first TableOne encounters looking at a published clinical trial. Such a ta

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Kuznetsova, I. R., A. S. Bukunov, and S. V. Bukunov. "Use of Modern Information Technologies to Optimization Business Processes." LETI Transactions on Electrical Engineering & Computer Science 15, no. 8 (2022): 57–68. http://dx.doi.org/10.32603/2071-8985-2022-15-8-57-68.

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A web-application developed at the Department of Information Technologies of the Saint Petersburg State University of Architecture and Civil Engineering, which makes it possible to optimize business processes of the active travel club, is described. The application can be categorized as business software. It allows the club's management to significantly facilitate the management of the club's management and financial accounting operations by automating of routine operations and visualization of the information necessary for making management decisions. The work was carried out according to the

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Valeriy, Lakhno, Malyukov Volodimir, Akhmetov Berik, Kasatkin Dmytro, and Plyska Liubov. "Development of a model for choosing strategies for investing in information security." Eastern-European Journal of Enterprise Technologies 2, no. 3(110) (2021): 43–51. https://doi.org/10.15587/1729-4061.2021.228313.

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This paper has proposed a model of the computational core for the decision support system (DSS) when investing in the projects of information security (IS) of the objects of informatization (OBI). Including those OBI that can be categorized as critically important. Unlike existing solutions, the proposed model deals with decision-making issues in the ongoing process of investing in the projects to ensure the OBI IS by a group of investors. The calculations were based on the bilinear differential quality games with several terminal surfaces. Finding a solution to these games is a big challenge.

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Lakhno, Valeriy, Volodimir Malyukov, Berik Akhmetov, Dmytro Kasatkin, and Liubov Plyska. "Development of a model for choosing strategies for investing in information security." Eastern-European Journal of Enterprise Technologies 2, no. 3 (110) (2021): 43–51. http://dx.doi.org/10.15587/1729-4061.2021.228313.

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This paper has proposed a model of the computational core for the decision support system (DSS) when investing in the projects of information security (IS) of the objects of informatization (OBI). Including those OBI that can be categorized as critically important. Unlike existing solutions, the proposed model deals with decision-making issues in the ongoing process of investing in the projects to ensure the OBI IS by a group of investors. The calculations were based on the bilinear differential quality games with several terminal surfaces. Finding a solution to these games is a big challenge.

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Agboeze, Tochukwu, Oluwasegun Daramola, Ayobami Akomolafe, Roqeeb Adedeji, and Julius Markwei. "A predictive algorithm for the analysis of AMR trends and healthcare decision support." Wellcome Open Research 9 (May 16, 2024): 274. http://dx.doi.org/10.12688/wellcomeopenres.21289.1.

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Background Translating available AMR surveillance data to observe evolving patterns of microbial resistance to antimicrobial agents while identifying regions at high risk of resistant cases and serving as a decision-support tool is an aspect of AMR surveillance that is rarely explored nationwide and uncommon globally. Therefore, we developed a two-tier dashboard algorithm (PATHFINDER) that can analyse antimicrobial surveillance datasets, observe evolving global spatiotemporal patterns of AMR, and integrate local AMR gene resources to identify functional AMR determinant genes and antibiotic cla

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Weiss, Sonja. "Plotin: O Ljubezni." Keria: Studia Latina et Graeca 12, no. 2-3 (2010): 429. http://dx.doi.org/10.4312/keria.12.2-3.429-437.

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Besedilo je prevedeno po kritični izdaji R. Beutlerja in W. Theilerja v: Richard Harder, prev., Plotins Schriften, Band V (Hamburg: Felix Meiner Verlag, 1960). Na mestih, označenih v opombah, slovenski prevod sledi izdaji: Paul Henry in Hans-Rudolf Schwyzer, izd., Plotini, Opera I–III (Pariz in Bruselj: Desclee De Brouwer, 1951–73). Na označenih mestih nekajkrat upošteva spremembe besedila predlagane v: Pierre Hadot, prev., Plotin, Traite 50 (Pariz: Les editions du Cerf, 1990). Ostale izdaje, prevodi in študije, ki jih navaja prevod: Arthur Hilary Armstrong, izd. in prev., Plotinus in Seven Vo

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Gueta, Tomer, Rahul Chauhan, Thiloshon Nagarajah, et al. "bddashboard: An infrastructure for biodiversity dashboards in R." Biodiversity Information Science and Standards 5 (September 27, 2021): e75684. https://doi.org/10.3897/biss.5.75684.

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<u>The bdverse</u> is a collection of packages that form a general framework for facilitating biodiversity science in R (programming language). Exploratory and diagnostic visualization can unveil hidden patterns and anomalies in data and allow quick and efficient exploration of massive datasets. The development of an interactive yet flexible dashboard that can be easily deployed locally or remotely is a highly valuable biodiversity informatics tool. To this end, we have developed 'bddashboard', which serves as an agile framework for biodiversity dashboard development. This project is built in

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Mallikarjunan, Arvind, Elizabeth Hensley, Abhinav Gundala, et al. "Lessons Learned from Nanbar Health: Developing a Multi-System Software Suite for Predictive Algorithms and Remote Monitoring for People Living with Sickle Cell Disease." Blood 142, Supplement 1 (2023): 5308. http://dx.doi.org/10.1182/blood-2023-188977.

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Background: Sickle cell disease (SCD) is a genetic disorder that alters the shape of red blood cells, leading to significant complications and requiring highly complex care. Efforts often focus on prevention and early diagnosis of pain to improve outcomes for those with SCD. Remote monitoring (RPM) and predictive algorithms has grown exponentially in the last decade as a support tool for managing chronic diseases like heart failure and diabetes. Implementing similar technology for SCD care could improve patient outcomes through early detection of complications and providing physicians with lon

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Nazarenko, Kirill, Ivan Poliakov, and Maria Smirnova. "Fruits of the Russian Enlightenment: O.M. Tsyavlovsky and his “Journal”." OOO "Zhurnal "Voprosy Istorii" 2021, no. 12-1 (2021): 87–97. http://dx.doi.org/10.31166/voprosyistorii202112statyi15.

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The article is devoted to a monument recently discovered in the Department of Manuscripts of the Library of the Academy of Sciences of Lithuania - the “Journal” of O.M. Tsyavlovsky. As a sergeant of the Life Guards of the Preobrazhensky Regiment, its author took part in the Archipelago expedition of the Russian Fleet of 1769-1774. The article examines the biography of O.M. Tsyavlovsky and the history of his family, gives an archaeographic characteristic of the manuscript. Special attention is paid to the characteristics of the unique information of the “Journal”, which describes the author’s v

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Brown, Christopher, Zoltán Kovács, and Tomás Recio. "Faithful Real-Time Animation of Parametrized (Semi-) Algebraic Expressions via Cylindrical Algebraic Decomposition." ACM Communications in Computer Algebra 57, no. 2 (2023): 43–46. http://dx.doi.org/10.1145/3614408.3614413.

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We present some current improvements, implemented in the software package GeoGebra Discovery, that combine symbolic computation and graphics algorithms to faithfully visualize (semi-)algebraic expressions. Our implementation allows fluid animation of set of (semi-)algebraic sets of dimension 1 in a desktop application or a web browser. We use the Tarski library to create a cylindrical algebraic decomposition of the input, and its plot2d command, which is processed further in GeoGebra Discovery, to provide the user with a familiar look and feel.

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Lyu, Keliang, Jiajing Xiao, Shiheng Lyu, and Renyi Liu. "Comparative Analysis of Transposable Elements in Strawberry Genomes of Different Ploidy Levels." International Journal of Molecular Sciences 24, no. 23 (2023): 16935. http://dx.doi.org/10.3390/ijms242316935.

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Transposable elements (TEs) make up a large portion of plant genomes and play a vital role in genome structure, function, and evolution. Cultivated strawberry (Fragaria x ananassa) is one of the most important fruit crops, and its octoploid genome was formed through several rounds of genome duplications from diploid ancestors. Here, we built a pan-genome TE library for the Fragaria genus using ten published strawberry genomes at different ploidy levels, including seven diploids, one tetraploid, and two octoploids, and performed comparative analysis of TE content in these genomes. The TEs compr

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Pupilli, F., M. E. Caceres, S. Arcioni, and C. L. Quarin. "Segregation analysis of RFLP markers reveals a tetrasomic inheritance in apomictic Paspalum simplex." Genome 40, no. 6 (1997): 822–28. http://dx.doi.org/10.1139/g97-806.

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Apomictic tetraploid Paspalum simplex was crossed with colchicine-doubled diploid sexual plants belonging to the same species. Homologous genomic probes were selected from a partial PstI genomic library for their capacity to detect alleles specific to the apomictic parent, and their segregation was analyzed in the F1 progeny. High levels of polymorphism between apomictic and sexual genotypes were recorded. The heterozygosity was high in both tetraploid and diploid genotypes but the differences between them were not as great as expected. In the sexual parent, some markers segregated as either a

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Yin, Liqin, Zhendong Zhu, Xuan Luo, et al. "Genome-Wide Duplication of Allotetraploid Brassica napus Produces Novel Characteristics and Extensive Ploidy Variation in Self-Pollinated Progeny." G3: Genes|Genomes|Genetics 10, no. 10 (2020): 3687–99. http://dx.doi.org/10.1534/g3.120.401493.

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Whole genome duplications (WGDs) have played a major role in angiosperm species evolution. Polyploid plants have undergone multiple cycles of ancient WGD events during their evolutionary history. However, little attention has been paid to the additional WGD of the existing allopolyploids. In this study, we explored the influences of additional WGD on the allopolyploid Brassica napus. Compared to tetraploid B. napus, octoploid B. napus (AAAACCCC, 2n = 8x =76) showed significant differences in phenotype, reproductive ability and the ploidy of self-pollinated progeny. Genome duplication also alte

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Harris-Shultz, Karen, Melanie Harrison, Phillip A. Wadl, Robert N. Trigiano, and Timothy Rinehart. "Development and Characterization of Microsatellite Markers for a Little Bluestem Collection." Journal of the American Society for Horticultural Science 140, no. 1 (2015): 78–87. http://dx.doi.org/10.21273/jashs.140.1.78.

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Little bluestem (Schizachyrium scoparium) is a perennial bunchgrass that is native to North American prairies and woodlands from southern Canada to northern Mexico. Originally used as a forage grass, little bluestem is now listed as a major U.S. native, ornamental grass. With the widespread planting of only a few cultivars, we aimed to assess the ploidy level and genetic diversity among some popular cultivars and accessions in the U.S. Department of Agriculture National Plant Germplasm System collection. Ten microsatellite markers, with successful amplification, were developed by using sequenc

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Singh, Neeta, Ankita Sethi, Lata Rani, Ritu Gupta, and Monika Saini. "#161 : Validation and Concordance of Non-Invasive Preimplantation Genetic Testing for Aneuploidy (niPGT-A) Using Cell Free DNA from Spent Culture Media (SCM) with Gold Standard Trophectoderm Biopsy." Fertility & Reproduction 05, no. 04 (2023): 602. http://dx.doi.org/10.1142/s2661318223743382.

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Background and Aims: Recent studies suggests that cell free(cf)-DNA is secreted in the spent culture medium (SCM) during embryo development, this can be used as non-invasive approach for PGTA. We aimed to validate Non-invasive Preimplantation Genetic Testing for aneuploidies (niPGT-A) using cf-DNA from SCM Methods: Prospective cohort study, tertiary centre from January-August 2021-2022. A total of 23 aneuploid/high mosaic embryos were donated by couples who had Trophectoderm (TE) biopsy for aneuploidy testing. All aneuploid blastocyst (WB) that were donated for research were thawed and transfe

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Jiao, Jiao, Bei Shi, Matthew Sagnelli, et al. "Minimally invasive preimplantation genetic testing using blastocyst culture medium." Human Reproduction 34, no. 7 (2019): 1369–79. http://dx.doi.org/10.1093/humrep/dez075.

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Abstract STUDY QUESTION Is minimally invasive chromosome screening (MICS) using blastocyst culture medium (BCM) sufficiently fast and accurate for preimplantation genetic testing (PGT) SUMMARY ANSWER A new assay for MICS, named MICS-Inst achieved high-resolution, comprehensive chromosome ploidy detection using BCM. WHAT IS KNOWN ALREADY BCM is a viable source of genomic DNA for use in PGT. STUDY DESIGN, SIZE, DURATION Forty-one vitrified blastocysts donated by 22 couples known to carry a chromosome rearrangement and 21 vitrified blastocysts donated from 8 couples with normal karyotypes were us

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Kumawat, Surbhi, Nitika Rana, Ruchi Bansal, et al. "Expanding Avenue of Fast Neutron Mediated Mutagenesis for Crop Improvement." Plants 8, no. 6 (2019): 164. http://dx.doi.org/10.3390/plants8060164.

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Fast neutron (FN) radiation mediated mutagenesis is a unique approach among the several induced mutagenesis methods being used in plant science in terms of impacted mutations. The FN mutagenesis usually creates deletions from few bases to several million bases (Mb). A library of random deletion generated using FN mutagenesis lines can provide indispensable resources for the reverse genetic approaches. In this review, information from several efforts made using FN mutagenesis has been compiled to understand the type of induced mutations, frequency, and genetic stability. Concerns regarding the

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Harris, Lyndsay, Herbert Fritsche, Robert Mennel, et al. "American Society of Clinical Oncology 2007 Update of Recommendations for the Use of Tumor Markers in Breast Cancer." Journal of Clinical Oncology 25, no. 33 (2007): 5287–312. http://dx.doi.org/10.1200/jco.2007.14.2364.

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PurposeTo update the recommendations for the use of tumor marker tests in the prevention, screening, treatment, and surveillance of breast cancer.MethodsFor the 2007 update, an Update Committee composed of members from the full Panel was formed to complete the review and analysis of data published since 1999. Computerized literature searches of MEDLINE and the Cochrane Collaboration Library were performed. The Update Committee's literature review focused attention on available systematic reviews and meta-analyses of published tumor marker studies. In general, significant health outcomes (overa

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Bickendorf, Kate, Fang Qi, Kelli Peirce, Jay Natalwala, Vincent Chapple, and Yanhe Liu. "#63 : Clinical Prognosis of Human Blastocysts Showing Spontaneous Collapsing: A Systematic Review and Meta-Analysis." Fertility & Reproduction 05, no. 04 (2023): 457. http://dx.doi.org/10.1142/s2661318223742339.

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Background and Aims: Spontaneous collapsing (SC) is a relatively new viability biomarker of human blastocysts which is only detectable via time-lapse videography. However, the prognosis of affected blastocysts remains poorly understood, with systematic review and meta-analysis absent from literature. This study is the first to comprehensively evaluate the clinical prognosis of SC blastocysts, including ploidy status, pregnancy, live birth and miscarriage rates. Method: Systematic review and meta-analysis were performed according to PRISMA, with protocol registered with PROSPERO (CRD42022373749

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Singh, Neeta, Ankita Sethi, Lata Rani, et al. "Role of Non-invasive Preimplantation Genetic Testing-Aneuploidy Using Spent Culture Media and its Concordance with Trophectoderm Biopsy: A Proof of Concept and Validation Study." Journal of Human Reproductive Sciences 18, no. 2 (2025): 70–79. https://doi.org/10.4103/jhrs.jhrs_192_24.

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Background: While trophectoderm (TE) biopsy with next-generation sequencing (NGS) remains the gold standard for preimplantation genetic testing for aneuploidy (PGT-A), the discovery of cell-free DNA (cfDNA) in spent culture media (SCM) has sparked interest in non-invasive PGT-A (NiPGT-A) as a potential alternative. Aim: The study was conducted to assess the feasibility of cell cfDNA from SCM as a tool for NiPGT-A in patients undergoing IVF for advanced age, repeated implantation failure or severe male factor infertility. Settings and Design: This is a prospective study where a total of 44 embr

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Roghi, C., R. Giet, R. Uzbekov, et al. "The Xenopus protein kinase pEg2 associates with the centrosome in a cell cycle-dependent manner, binds to the spindle microtubules and is involved in bipolar mitotic spindle assembly." Journal of Cell Science 111, no. 5 (1998): 557–72. http://dx.doi.org/10.1242/jcs.111.5.557.

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By differential screening of a Xenopus laevis egg cDNA library, we have isolated a 2,111 bp cDNA which corresponds to a maternal mRNA specifically deadenylated after fertilisation. This cDNA, called Eg2, encodes a 407 amino acid protein kinase. The pEg2 sequence shows significant identity with members of a new protein kinase sub-family which includes Aurora from Drosophila and Ipl1 (increase in ploidy-1) from budding yeast, enzymes involved in centrosome migration and chromosome segregation, respectively. A single 46 kDa polypeptide, which corresponds to the deduced molecular mass of pEg2, is

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Aidukaitė, Greta, and Jūratė Žekonienė. "KERATINIZUOTŲ DANTENŲ ĮTAKA PERIIMPLANTINIŲ AUDINIŲ SVEIKATAI." Health Sciences 31, no. 3 (2021): 132–38. http://dx.doi.org/10.35988/sm-hs.2021.095.

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Šiuolaikinėje implantologijoje pasiekiami aukšti dantų implantų išgyvenamumo rodikliai, tačiau aktualia problema išlieka didelis su implantais susijusių komplikacijų paplitimas. Siekiant sumažinti biologinių komplikacijų dažnį, vis didesnis dėmesys skiriamas minkštųjų audinių plastikai aplink implantus, tačiau keratinizuotų dantenų svarba periimplantinių audinių sveikatai literatūroje vertinama kontroversiškai. Tyrimo tikslas – atlikti naujausios mokslinės literatūros apžvalgą apie keratinizuotų dantenų pločio (KDP) įtaką individualios burnos higienos užtik

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Giménez-Rodríguez, Francisco J. "De Falla's Hungarian Success: A háromszögletű kalap (1928)." Studia Musicologica 59, no. 3-4 (2018): 309–21. http://dx.doi.org/10.1556/6.2018.59.3-4.4.

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Abstract In this study, I examine a hitherto completely unknown subject: the Hungarian reception of Manuel de Falla's ballet pantomime, El sombrero de tres picos (The three-cornered hat). As I point out, the story of the piece began well before Falla composed his music: Alarcón's novel was published in a Hungarian translation just two decades after the Spanish original. In the first decades of the twentieth century, the Budapest Opera House (Magyar Állami Operaház) and Municipal Theatre (Városi Színház) developed intensive opera, theatre, and ballet seasons, in association with the main Europe

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Matson, Michael E. H., Qihua Liang, Stefano Lonardi, and Howard S. Judelson. "Karyotype variation, spontaneous genome rearrangements affecting chemical insensitivity, and expression level polymorphisms in the plant pathogen Phytophthora infestans revealed using its first chromosome-scale assembly." PLOS Pathogens 18, no. 10 (2022): e1010869. http://dx.doi.org/10.1371/journal.ppat.1010869.

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Natural isolates of the potato and tomato pathogen Phytophthora infestans exhibit substantial variation in virulence, chemical sensitivity, ploidy, and other traits. A chromosome-scale assembly was developed to expand genomic resources for this oomyceteous microbe, and used to explore the basis of variation. Using PacBio and Illumina data, a long-range linking library, and an optical map, an assembly was created and coalesced into 15 pseudochromosomes spanning 219 Mb using SNP-based genetic linkage data. De novo gene prediction combined with transcript evidence identified 19,981 protein-coding

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Sfakianoudis, Konstantinos, Evangelos Maziotis, Sokratis Grigoriadis, et al. "Reporting on the Value of Artificial Intelligence in Predicting the Optimal Embryo for Transfer: A Systematic Review including Data Synthesis." Biomedicines 10, no. 3 (2022): 697. http://dx.doi.org/10.3390/biomedicines10030697.

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Artificial intelligence (AI) has been gaining support in the field of in vitro fertilization (IVF). Despite the promising existing data, AI cannot yet claim gold-standard status, which serves as the rationale for this study. This systematic review and data synthesis aims to evaluate and report on the predictive capabilities of AI-based prediction models regarding IVF outcome. The study has been registered in PROSPERO (CRD42021242097). Following a systematic search of the literature in Pubmed/Medline, Embase, and Cochrane Central Library, 18 studies were identified as eligible for inclusion. Re

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McCallie, Blair R., Mary E. Haywood, Lauren N. Henry, Rachel M. Lee, William B. Schoolcraft, and Mandy G. Katz-Jaffe. "The Identification of Molecular Ploidy Status of Abnormal Pronuclear Zygotes Reveals a Significant Number of Euploid Blastocysts Available for Conception." Biomedicines 13, no. 1 (2024): 51. https://doi.org/10.3390/biomedicines13010051.

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Objective: Abnormally fertilized embryos are often discarded during in vitro fertilization due to the fact that known chromosomal ploidy abnormalities lead to implantation failure or pregnancy loss. The objective of this study was to determine if pronuclear numeration (PN) observed at fertilization check is representative of the true ploidy status of the subsequent developing blastocyst in order to maximize the number of viable embryos available for infertility patients and increase their chances of conception. Methods: Upon successful fertilization, pronuclear numeration was noted, and zygote

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Kutsev, M. G., M. V. Skaptsov, S. V. Smirnov, et al. "POSSIBILITIES OF DE NOVO TRANSCRIPTOME SEQUENCING IN PYLOGENETIC RESEARCH ON AN EXAMPLE OF TARAXACUM OFFICINALE (ASTERACEAE)." Biological Bulletin of Bogdan Chmelnitskiy Melitopol State Pedagogical University 6, no. 3 (2016): 319–23. http://dx.doi.org/10.15421/2016101.

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<p class="Default"> </p><p>As a result of the research we obtained a cDNA library, sequences and carried out <em>de novo </em>assembly and functional annotation of the transcriptome of systematically complex, almost cosmopolitan <em>Taraxacum officinale</em>. Systematics of the species is complicated because of separation of many microspecies and intraspecific taxa, which may be explained by the presence of ploidy races, the phenomenon of apomixis and significant polymorphism. Attempts of separation of microspecies and closely related species based on

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Torkamaneh, Davoud, Jérôme Laroche, Brian Boyle, and François Belzile. "DepthFinder: a tool to determine the optimal read depth for reduced-representation sequencing." Bioinformatics 36, no. 1 (2019): 26–32. http://dx.doi.org/10.1093/bioinformatics/btz473.

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Abstract Motivation Identification of DNA sequence variations such as single nucleotide polymorphisms (SNPs) is a fundamental step toward genetic studies. Reduced-representation sequencing methods have been developed as alternatives to whole genome sequencing to reduce costs and enable the analysis of many more individual. Amongst these methods, restriction site associated sequencing (RSAS) methodologies have been widely used for rapid and cost-effective discovery of SNPs and for high-throughput genotyping in a wide range of species. Despite the extensive improvements of the RSAS methods in th

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Tropé, Claes, and Janne Kaern. "Adjuvant Chemotherapy for Early-Stage Ovarian Cancer: Review of the Literature." Journal of Clinical Oncology 25, no. 20 (2007): 2909–20. http://dx.doi.org/10.1200/jco.2007.11.1013.

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Purpose This overview summarizes studies with acceptable quality and validity and presents a synthesis of the effectiveness on adjuvant therapy after surgery for early ovarian cancer (EOC) patients. Methods The literature published between 1970 and 2006 was identified systematically by computer-based searches in MEDLINE and Cochrane library. Results Twenty-two prospective randomized studies were analyzed, which included 4,626 patients. No difference between adjuvant chemotherapy (AC) and radiotherapy was found. There is agreement on that patients with stage IA, grade 1 tumors have excellent su

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Shum, B. P., D. Avila, L. Du Pasquier, M. Kasahara, and M. F. Flajnik. "Isolation of a classical MHC class I cDNA from an amphibian. Evidence for only one class I locus in the Xenopus MHC." Journal of Immunology 151, no. 10 (1993): 5376–86. http://dx.doi.org/10.4049/jimmunol.151.10.5376.

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Abstract The amphibian Xenopus is an ectothermic vertebrate in which the MHC has been studied extensively at the functional, biochemical, and genetic levels. A cDNA clone corresponding to the MHC class la gene (Xela-UAA1f) of Xenopus laevis was isolated by screening a cDNA phage library with oligonucleotides based on NH2-terminal protein sequence. Three pieces of evidence support its status as a class la gene: 1) Previous biochemical data suggested that only one polymorphic class la molecule is expressed per MHC haplotype in X. laevis. NH2-terminal sequencing of the class I protein encoded by

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Lu, Sijia. "#237 : The Application of Noninvasive Implantation Capability Screening (NICS®) Resulted in Improved Clinical Outcomes in Patients with Recurrent Pregnancy Loss or Repeated Implantation Failure." Fertility & Reproduction 05, no. 04 (2023): 617. http://dx.doi.org/10.1142/s2661318223743515.

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Background and Aims: Chromosomal abnormalities are frequently observed in early human embryos, particularly in patients experiencing repeated pregnancy loss (RPL) or repeated implantation failure (RIF). Although preimplantation genetic testing for aneuploidy (PGT-A) is a common technique for screening embryo ploidy, it comes with the risks associated with embryo biopsy. To address this issue, we developed the NICS assay, which evaluates embryos using spent culture medium (SCM) and thus reduces the risks associated with embryo biopsy. However, further evaluation is required to determine the cli

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Fortuna, Alexander, Jon Torchia, Mital Bhatka, et al. "Abstract 6631: High-resolution characterization of FFPE-derived linked-read libraries for cancer genomics." Cancer Research 85, no. 8_Supplement_1 (2025): 6631. https://doi.org/10.1158/1538-7445.am2025-6631.

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Abstract Deciphering genomic architecture is crucial for identifying novel disease drivers and understanding cancer initiation and progression mechanisms. While short-read sequencing remains the primary tool in cancer genomics, it may miss important structural variants (SVs), especially large chromosomal alterations. A further challenge to cancer researchers is working with FFPE (formalin-fixed, paraffin-embedded) samples, the most common source of archived material, as this sample type is often at risk of nucleic acid fragmentation, DNA crosslinks, and deamination, further complicating varian

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K, Kochar Kaur. "Role of Artificial Intelligence with Regards to Improving Success Rate in Human In Vitro Fertilization with Emphasis on the Blastocyst Characteristics with Respect to Improving Implantation, Avoiding Aneuploidy for Optimization of Live Birth Rates." Open Access Journal of Gynecology 6, no. 2 (2022): 1–10. http://dx.doi.org/10.23880/oajg-16000214.

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Artificial Intelligence (AI) is an expanding field to optimize results in medicine with special emphasis in radiology with optimization of images. Similarly in reproductive medicine it has taken over in the last few years. Ideally embryo assessment as well as selection decides the ultimate fate of the in vitro fertilization (IVF) event. The objective is to pick the best out of the large cohort of the oocytes that managed to get fertilized. Maximum of which would work out to be nonviable secondary to aberrant generation or chromosomal aberrations. It has usually been recognized that despite emb

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Bashmakova, N. V., A. Yu Khramtsova, and A. A. Danishevskaya. "Modern aspects of preimplantation genetic testing of embryos in assisted reproductive technology programs (literature review)." Bulletin of maternal and child care 1, no. 1 (2024): 48–55. http://dx.doi.org/10.69964/bmcc-2024-1-1-48-55.

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Background. The success of assisted reproductive technologies depends on many factors, the main ones being the quality and genetic status of the embryo and endometrial receptivity. Preimplantation genetic testing is a tool that aims to reduce the risk of selecting an aneuploid embryo for transfer. Disputes surrounding the use of preimplantation genetic testing are conducted in the context of older patients, with recurrent miscarriage, with genetic karyotype abnormalities in a married couple, as well as multiple unsuccessful attempts at ART in the anamnesis.Purpose of review. To summarize and a

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Ntostis, P., D. Iles, G. Kokkali, et al. "The impact of maternal age on gene expression during the GV to MII transition in euploid human oocytes." Human Reproduction 37, no. 1 (2021): 80–92. http://dx.doi.org/10.1093/humrep/deab226.

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Abstract STUDY QUESTION Are there age-related differences in gene expression during the germinal vesicle (GV) to metaphase II (MII) stage transition in euploid human oocytes? SUMMARY ANSWER A decrease in mitochondrial-related transcripts from GV to MII oocytes was observed, with a much greater reduction in MII oocytes with advanced age. WHAT IS KNOWN ALREADY Early embryonic development is dependent on maternal transcripts accumulated and stored within the oocyte during oogenesis. Transcriptional activity of the oocyte, which dictates its ultimate developmental potential, may be influenced by a

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Chung, Christine H., Graydon Moorhead, Nicholas Haradhvala, et al. "Evaluation of tumor mutation burden (TMB) in tumor (tDNA) and plasma cell free DNA (cfDNA) in patients (pts) with recurrent/metastatic head and neck squamous cell carcinoma (R/M HNSCC) treated with a combination of cetuximab and nivolumab (C+N)." Journal of Clinical Oncology 41, no. 16_suppl (2023): 6053. http://dx.doi.org/10.1200/jco.2023.41.16_suppl.6053.

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6053 Background: High TMB is associated with immune checkpoint inhibitor (ICI) response in many solid tumors. However, obtaining sufficient tumor specimens for testing in a routine clinical setting could be a challenge. We evaluated TMB from whole-exome sequencing (WES) of cfDNA as a surrogate for tDNA TMB in R/M HNSCC pts treated with C+N. Methods: Archived formalin fixed paraffin embedded tumors, serially collected plasma (pre-treatment, on-treatment, and time of disease progression/end of treatment), peripheral mononuclear blood cells, and clinical data were obtained from R/M HNSCC pts trea

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