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Journal articles on the topic 'Poly(dA)poly(dT)'

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Published: 3 June 2025

Last updated: 31 July 2025

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1

Chandrasekaran, Rengaswami, Andrea Giacometti, and Struther Arnott. "Structure of Poly (dT)·Poly (dA)·Poly (dT)." Journal of Biomolecular Structure and Dynamics 17, no. 6 (2000): 1011–22. http://dx.doi.org/10.1080/07391102.2000.10506589.

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2

STRAUSS, Franqois, Claire GAILLARD, and Ariel PRUNELL. "Helical Periodicity of DNA, Poly(dA)·Poly(dT) and Poly(dA-dT)·Poly(dA-dT) in Solution." European Journal of Biochemistry 118, no. 2 (2005): 215–22. http://dx.doi.org/10.1111/j.1432-1033.1981.tb06389.x.

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3

Tuite, Eimer, and Bengt Nordén. "Methylene blue intercalates with triplex poly(dT)*poly(dA)·poly(dT) but not duplex poly(dA)·poly(dT)." J. Chem. Soc., Chem. Commun., no. 1 (1995): 53–54. http://dx.doi.org/10.1039/c39950000053.

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4

Lin, Meng-Chih, Pascale Eid, Patrick T. T. Wong, and Robert B. Macgregor. "High pressure fourier transform infrared spectroscopy of poly(dA)poly(dT), poly(dA) and poly(dT)." Biophysical Chemistry 76, no. 2 (1999): 87–94. http://dx.doi.org/10.1016/s0301-4622(98)00234-8.

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5

Thomas, George J., and James M. Benevides. "An A-helix structure for poly(dA-dT) · poly(dA-dT)." Biopolymers 24, no. 6 (1985): 1101–5. http://dx.doi.org/10.1002/bip.360240613.

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6

Airoldi, Marta, C. Andrea Boicelli, Giuseppe Gennaro, Marcello Giomini, Anna Maria Giuliani, and Mauro Giustini. "A spectroscopic study of poly(dA–dT)·poly(dA–dT) in microemulsions." Physical Chemistry Chemical Physics 2, no. 20 (2000): 4636–41. http://dx.doi.org/10.1039/b003745l.

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7

Arif, Zarina, and Rashid Ali. "Antigenicity of Poly(dA–dT)·Poly(dA–dT) Photocrosslinked with 8-Methoxypsoralen." Archives of Biochemistry and Biophysics 329, no. 2 (1996): 191–98. http://dx.doi.org/10.1006/abbi.1996.0208.

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8

Latimer, Laura J. P., Natasha Payton, Gavin Forsyth, and Jeremy S. Lee. "The binding of analogues of coralyne and related heterocyclics to DNA triplexes." Biochemistry and Cell Biology 73, no. 1-2 (1995): 11–18. http://dx.doi.org/10.1139/o95-002.

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Coralyne has been shown previously to bind well to both T∙A∙T- and C∙G∙C+-containing triplexes. Derivatives of coralyne were prepared and their binding to poly(dT)∙poly(dA)∙poly(dT) and poly[d(TC)]∙poly[d(GA)]∙poly[d(C+T)] was assessed from thermal denaturation profiles. A tetraethoxy derivative showed only weak binding to both types of triplex. Analogues with extended 8-alkyl chains showed good binding to poly(dT)∙poly(dA)∙poly(dT), but the preference for triplex poly[d(TC)]∙poly[d(GA)]∙poly[d(C+T)] was decreased compared with the duplex. Sanguinarine, a related alkaloid, bound well to poly(d

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9

Dadarlat, Voichita M., and V. K. Saxena. "Stability of Triple-Helical Poly(dT)-Poly(dA)-Poly(dT) DNA with Counterions." Biophysical Journal 75, no. 1 (1998): 70–91. http://dx.doi.org/10.1016/s0006-3495(98)77496-x.

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10

Suggs, J. William, and Donna A. Taylor. "Use of phosphorothioate analogs of poly(dA-dT) · poly(dAdT) to study steroidal-diamine induced conformational change in poly(dA-dT) · poly(dA-dT)." FEBS Letters 189, no. 1 (1985): 77–80. http://dx.doi.org/10.1016/0014-5793(85)80845-0.

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11

Fodor, Stephen P. A., Philip A. Starr, and Thomas G. Spiro. "Raman spectroscopic elucidation of DNA backbone conformations for poly(dG-dT) · poly(dA-dC) and poly(dA-dT) · poly(dA-dT) in CsF solution." Biopolymers 24, no. 8 (1985): 1493–500. http://dx.doi.org/10.1002/bip.360240806.

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12

Delcros, J. G., M. C. J. M. Sturkenboom, H. S. Basu, et al. "Differential effects of spermine and its analogues on the structures of polynucleotides complexed with ethidium bromide." Biochemical Journal 291, no. 1 (1993): 269–74. http://dx.doi.org/10.1042/bj2910269.

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The interactions of spermine and polyamine analogues with synthetic polynucleotides of various base sequences complexed with ethidium bromide (EB) were investigated using measurements of fluorescence intensity and steady-state fluorescence polarization. Spermine and polyamine analogues displaced some but not all of the EB bound to poly(dA-dT).poly(dA-dT) or poly(dG-dC).poly(dG-dC), suggesting that polyamines may stabilize these polynucleotides in a conformation with reduced affinity for EB. Modifications of the aliphatic backbone of spermine have pronounced effects on its ability to displace E

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13

Ge, G., and S. Georghiou. "EXCITED-STATE PROPERTIES OF THE ALTERNATING POLYNUCLEOTIDE POLY(dA-dT)POLY(dA-dT)." Photochemistry and Photobiology 54, no. 2 (1991): 301–5. http://dx.doi.org/10.1111/j.1751-1097.1991.tb02020.x.

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14

Ojima, Noriyuki, Kunihiko Gekko, and Kiwamu Yamaoka. "Pulsed Electric Linear Dichroism of Poly(dA)·Poly(dT)·Poly(dT) and Poly(rA)·Poly(rU)·Poly(rU) in Solutions." Bulletin of the Chemical Society of Japan 70, no. 7 (1997): 1559–72. http://dx.doi.org/10.1246/bcsj.70.1559.

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15

Chaires, Jonathan B. "Unusual condensation behavior of poly(dA)-poly(dT)." Biopolymers 28, no. 9 (1989): 1645–50. http://dx.doi.org/10.1002/bip.360280913.

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16

Puhl, Henry L. "Formation of Nucleosomes With Poly(dA)·Poly(dT)." Guthrie Journal 65, no. 1 (1996): 6–13. http://dx.doi.org/10.3138/guthrie.65.1.006.

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17

Tanaka, Shin-ichi, Shinsuke Fujiwara, Hiroyuki Tanaka, et al. "Synthesis of long Poly(dA)·Poly(dT) DNA without structural defects using enzymatic reaction; Tailored ligated Poly(dA)·Poly(dT)." Chem. Commun., no. 20 (2002): 2330–31. http://dx.doi.org/10.1039/b205821a.

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18

Bhowmik, Debipreeta, та Gopinatha Suresh Kumar. "Interaction of 9-O-(ω-amino) alkyl ether berberine analogs with poly(dT)·poly(dA)*poly(dT) triplex and poly(dA)·poly(dT) duplex: a comparative study". Molecular Biology Reports 40, № 9 (2013): 5439–50. http://dx.doi.org/10.1007/s11033-013-2642-z.

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19

Airoldi, Marta, C. Andrea Boicelli, Fabio Cadoni, et al. "Titration of poly(dA-dT) · poly(dA-dT) in solution at variable NaCl concentration." Biopolymers 75, no. 2 (2004): 118–27. http://dx.doi.org/10.1002/bip.20108.

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20

Tjahjono, Daryono H., Suhendar, Benny Permana, Naoki Yoshioka, and Hidenari Inoue. "Binding of nickel(II) tetrakis(dimethylpyrazolium-4-yl)porphyrin to poly(dG-dC)2 and poly(dA-dT)2." Journal of Porphyrins and Phthalocyanines 14, no. 04 (2010): 305–13. http://dx.doi.org/10.1142/s1088424610002148.

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The interaction of nickel(II) complex of cationic porphyrins bearing five-membered rings, meso-tetrakis(1,2-dimethylpyrazolium-4-yl)porphyrinatonickel(II) (NiPzP) , with synthetic polynucleotides poly(dG-dC)2 and poly(dA-dT)2 has been characterized by viscometric, visible absorption, CD and MCD spectroscopic, and melting temperature measurements. The nickel(II) complex NiPzP is intercalated into poly(dG-dC)2 but outside bound to the major groove of poly(dA-dT)2. The binding constants of NiPzP to poly(dG-dC)2 and poly(dA-dT)2 are in the order of 106 M-1 and comparable to those of other reported

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21

Polak, M. "Complete disproportionation of duplex poly(dT)middle dotpoly(dA) into triplex poly(dT)middle dotpoly(dA)middle dotpoly(dT) and poly(dA) by coralyne." Nucleic Acids Research 30, no. 4 (2002): 983–92. http://dx.doi.org/10.1093/nar/30.4.983.

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22

Aymami, Joan, Miquel Coll, Christin A. Frederick, Andrew H. J. Wang, and Alexander Rich. "The propeller DNA conformation of poly(dA).poly(dT)." Nucleic Acids Research 17, no. 8 (1989): 3229–45. http://dx.doi.org/10.1093/nar/17.8.3229.

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23

Fukudome, Kiyohiro, Yukihiro Kumamoto, and Kiwamu Yamaoka. "Sonication, Fractionation, and Molecular Weight Distribution of Alternating Polydeoxyribonucleotides: Poly(dG-dC) · Poly(dG-dC) and Poly(dA-dT) · Poly(dA-dT)." Polymer Journal 27, no. 2 (1995): 101–10. http://dx.doi.org/10.1295/polymj.27.101.

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24

Hennig, D., E. B. Starikov, J. F. R. Archilla, and F. Palmero. "Charge Transport in Poly(dG)–Poly(dC) and Poly(dA)–Poly(dT) DNA Polymers." Journal of Biological Physics 30, no. 3 (2004): 227–38. http://dx.doi.org/10.1023/b:jobp.0000046721.92623.a9.

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25

Chernyi, A. A., Yu P. Lysov, I. A. Il'ychova, et al. "Four-Stranded DNA Helices: Conformational Analysis of Regular Poly(dT) · Poly(dA) · Poly(dA) · Poly(dT) Helices with Various Types of Base Binding." Journal of Biomolecular Structure and Dynamics 8, no. 3 (1990): 513–27. http://dx.doi.org/10.1080/07391102.1990.10507826.

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26

Movileanu, Liviu, James M. Benevides, and George J. Thomas. "Temperature dependence of the raman spectrum of DNA. II. Raman signatures of premelting and melting transitions of poly(dA)·poly(dT) and comparison with poly(dA-dT)·poly(dA-dT)*." Biopolymers 63, no. 3 (2002): 181–94. http://dx.doi.org/10.1002/bip.10022.

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27

Beck, Amanda, Veena Vijayanathan, Thresia Thomas, and T. J. Thomas. "Ionic microenvironmental effects on triplex DNA stabilization: Cationic counterion effects on poly(dT)·poly(dA)·poly(dT)." Biochimie 95, no. 6 (2013): 1310–18. http://dx.doi.org/10.1016/j.biochi.2013.02.012.

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28

Grygon, Christine A., and Thomas G. Spiro. "Ultraviolet resonance Raman spectroscopy of distamycin complexes with poly(dA)-poly(dT) and poly(dA-dT): role of hydrogen bonding." Biochemistry 28, no. 10 (1989): 4397–402. http://dx.doi.org/10.1021/bi00436a041.

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29

Cui, Tengjiao, Shuo Wei, Keith Brew, and Fenfei Leng. "Energetics of Binding the Mammalian High Mobility Group Protein HMGA2 to poly(dA-dT)2 and poly(dA)-poly(dT)." Journal of Molecular Biology 352, no. 3 (2005): 629–45. http://dx.doi.org/10.1016/j.jmb.2005.07.048.

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30

Singh, Mahi R., Graeme Bart, and Martin Zinke-Allmang. "Polaron Hopping in Nano-scale Poly(dA)–Poly(dT) DNA." Nanoscale Research Letters 5, no. 3 (2010): 501–4. http://dx.doi.org/10.1007/s11671-010-9548-7.

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31

Lamiri, Abdelghani, Guy Albiser, and Samuel Premilat. "Polymorphism and Disorder of Poly(dA).Poly(dT) in Fibers." Biochemical and Biophysical Research Communications 253, no. 3 (1998): 809–12. http://dx.doi.org/10.1006/bbrc.1998.9847.

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32

Biver, Tarita, Marco Pulzonetti, Fernando Secco, Marcella Venturini, and Sergiy Yarmoluk. "A kinetic analysis of cyanine selectivity: CCyan2 and Cyan40 intercalation into poly(dA–dT)·poly(dA–dT) and poly(dG–dC)·poly(dG–dC)." Archives of Biochemistry and Biophysics 451, no. 2 (2006): 103–11. http://dx.doi.org/10.1016/j.abb.2006.04.020.

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33

Mrevlishvili, G. M., V. M. Sokhadze, G. Sh Japaridze, D. A. Tatishvili, and N. E. Yackobashvili. "Microcalorimetric studies in hydration of Poly(dA)-Poly(dT) and Poly(dG)-Poly(dC) polynucleotides." Biopolymers and Cell 5, no. 1 (1989): 27–31. http://dx.doi.org/10.7124/bc.00003b.

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34

Sung, Giwoong, Jong Heon Shin, Raeyeong Kim, et al. "Binding Geometry of Free Base and Mn(III)meso‐Tetrakis(N‐methylpyridium‐4‐yl)porphyrin to Various Duplex and Triplex DNAs." Bulletin of the Korean Chemical Society 36, no. 2 (2015): 650–58. http://dx.doi.org/10.1002/bkcs.10127.

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The binding mode of free base and Mn(III)meso‐tetrakis(N‐methylpyridium‐4‐yl)porphyrin (TMPyP and MnTMPyP) to various duplex and triplex synthetic polynucleotides was investigated by polarized light spectroscopy, specifically circular and linear dichroism (CD and LD) spectroscopy. Both TMPyP and MnTMPyP produced a similar positive CD spectrum in the Soret absorption region when bound to poly(dA)·poly(dT) duplex and poly(dA)·[poly(dT)]2 triplex. Considering that the third poly(dT) strand blocks the major groove, this result suggested that both porphyrins bound near the minor groove where the ax

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35

Ballard, D. W., and E. W. Voss. "Base specificity and idiotypy of anti-DNA autoantibodies reactive with synthetic nucleic acids." Journal of Immunology 135, no. 5 (1985): 3372–80. http://dx.doi.org/10.4049/jimmunol.135.5.3372.

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Abstract Synthetic nucleic acid reactivities and the distribution of idiotypes associated with poly(dA) and poly(dT) specificities were evaluated among both monoclonal and polyclonal anti-DNA antibodies from autoimmune New Zealand mice. Ten monoclonal anti-DNA antibodies (IgG2a or IgG2b), derived from NZB/NZW mice and reactive with natural DNA (duplex and/or heat-denatured), were found to collectively exhibit a diverse binding pattern with six deoxyribohomopolymers. Several monoclonal antibodies displayed reactivity with poly(dT) comparable to that with natural DNA. Serologic studies indicated

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36

Vardevanyan, P. O., A. P. Antonyan, G. A. Manukyan, A. T. Karapetyan, A. K. Shchyolkina, and O. F. Borisova. "Ethidium bromide binding to native and denatured poly(dA)poly(dT)." Molecular Biology 34, no. 2 (2000): 272–76. http://dx.doi.org/10.1007/bf02759651.

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37

Liu, C., G. S. Edwards, S. Morgan, and E. Silberman. "Low-frequency, Raman-active vibrational modes of poly(dA)⋅poly(dT)." Physical Review A 40, no. 12 (1989): 7394–97. http://dx.doi.org/10.1103/physreva.40.7394.

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38

Parsadanyan, Marine A., Ara P. Antonyan, Poghos O. Vardevanyan, and Hakob E. Sngryan. "Interaction of Methylene Blue with Synthetic Polynucleotide Poly(dA)-Poly(dT)." Biophysical Reviews and Letters 13, no. 01 (2018): 29–36. http://dx.doi.org/10.1142/s1793048018500030.

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The interaction of methylene blue (MB) with poly(dA)-poly(dT) has been studied. It was revealed that MB binds to this polynucleotide by strong and weak modes. It was shown that the strong binding mode of MB is realized by semi-intercalation. Apart from the strong mode, this ligand binds to AT-sequences by weak electrostatic modes as well. Values of the binding constant [Formula: see text] and number of base pairs [Formula: see text] per binding site of MB for the mentioned modes were determined. It was shown that at the interaction with AT sequences MB does not behave itself as a groove bindin

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39

Bischoff, Gerlinde, Ulrich Gromann, Sabine Lindau, et al. "Stabilization of Double Stranded Homologous Poly(dA)·Poly(dT) by Taxol." Journal of Biomolecular Structure and Dynamics 17, sup1 (2000): 349–54. http://dx.doi.org/10.1080/07391102.2000.10506640.

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40

Puhl, Henry L., and Michael J. Behe. "Poly(dA)·Poly(dT) Forms Very Stable Nucleosomes at Higher Temperatures." Journal of Molecular Biology 245, no. 5 (1995): 559–67. http://dx.doi.org/10.1006/jmbi.1994.0046.

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41

Światek, Jolanta. "Voltammetric Study of the Interaction of Pb(II) with the Double Stranded Polynucleotides Poly(dA-dT) · Poly(dA-dT) and Poly(dG-dC) · Poly(dG-dC)." Journal of Coordination Chemistry 22, no. 2 (1990): 121–30. http://dx.doi.org/10.1080/00958979009410035.

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42

Awasthi, Pamita, Shilpa Dogra, and Ritu Barthwal. "Multispectroscopic methods reveal different modes of interaction of anti cancer drug mitoxantrone with Poly(dG-dC).Poly(dG-dC) and Poly(dA-dT).Poly(dA-dT)." Journal of Photochemistry and Photobiology B: Biology 127 (October 2013): 78–87. http://dx.doi.org/10.1016/j.jphotobiol.2013.07.023.

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43

Airoldi, Marta, Giuseppe Gennaro, Marcello Giomini, Anna Maria Giuliani, and Mauro Giustini. "Circular dichroism of polynucleotides: Interactions of NiCl2with poly(dA-dT)·poly(dA-dT) and poly(dG-dC)·poly(dG-dC) in a water-in-oil microemulsion." Chirality 20, no. 9 (2008): 951–60. http://dx.doi.org/10.1002/chir.20531.

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44

Airoldi, Marta, Giuseppe Gennaro, Marcello Giomini, Anna Maria Giuliani, and Mauro Giustini. "Interaction of the Alternating Double Stranded Copolymer poly(dA-dT)·poly(dA-dT) with NiCl2and CdCl22: Solution Behavior." Journal of Biomolecular Structure and Dynamics 25, no. 1 (2007): 77–84. http://dx.doi.org/10.1080/07391102.2007.10507157.

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45

Parsadanyan, Marine A. "DUPLEX–TRIPLEX TRANSITION IN COMPLEXES OF NUCLEIC ACIDS WITH HOECHST 33258." Proceedings of the YSU B: Chemical and Biological Sciences 55, no. 1 (254) (2021): 39–45. http://dx.doi.org/10.46991/pysu:b/2021.55.1.039.

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The study of complexes of groove binding ligand Hoechst 33258 (H33258) with Calf Thymus DNA has been carried out. The data obtained revealed that the melting curves of the complexes of H33258 with DNA are monophasic at low ligand concentrations (0 < r ≤ 0.2) and become biphasic at relatively high concentrations (0.2 < r ≤ 0.33). This effect was revealed to depend on the ionic strength of the solution, and can also occur at high concentrations of the ligand. Comparison of the obtained data with the results for poly(rA)-poly(rU) and poly(dA)-poly(dT) shows a coincidence in the case of DNA

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46

Ruiz, Rebeca, Francisco J. Hoyuelos, Ana M. Navarro, José M. Leal, and Begoña García. "Unequal effect of ethanol–water on the stability of ct-DNA, poly[(dA–dT)]2 and poly(rA)·poly(rU). Thermophysical properties." Physical Chemistry Chemical Physics 17, no. 3 (2015): 2025–33. http://dx.doi.org/10.1039/c4cp03459g.

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47

Yamada, H., E. B. Starikov, and D. Hennig. "Quantum diffusion in polaron model of poly(dG)-poly(dC) and poly(dA)-poly(dT) DNA polymers." European Physical Journal B 59, no. 2 (2007): 185–92. http://dx.doi.org/10.1140/epjb/e2007-00274-4.

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48

Taniguchi, Masateru, Hea-Yeon Lee, Hidekazu Tanaka, and Tomoji Kawai. "Electrical Properties of Poly(dA)·Poly(dT) and Poly(dG)·Poly(dC) DNA Doped with Iodine Molecules." Japanese Journal of Applied Physics 42, Part 2, No. 3A (2003): L215—L216. http://dx.doi.org/10.1143/jjap.42.l215.

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49

Miskovsky, P., L. Chinsky, A. Laigle, and P. Y. Turpin. "The Z-Conformation of Poly(dA-dT) · Poly(dA-dT) in Solution as Studied by Ultraviolet Resonance Raman Spectroscopy." Journal of Biomolecular Structure and Dynamics 7, no. 3 (1989): 623–37. http://dx.doi.org/10.1080/07391102.1989.10508511.

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50

Liquier, J., A. Mchami, and E. Taillandier. "FTIR Study of Netropsin Binding to Poly d(A-T) and Poly dA · Poly dT." Journal of Biomolecular Structure and Dynamics 7, no. 1 (1989): 119–26. http://dx.doi.org/10.1080/07391102.1989.10507755.

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