Academic literature on the topic 'Polyhydroxyalkanoate synthase (phaC)'

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Journal articles on the topic "Polyhydroxyalkanoate synthase (phaC)"

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Niamsiri, Nuttawee, Soazig C. Delamarre, Young-Rok Kim, and Carl A. Batt. "Engineering of Chimeric Class II Polyhydroxyalkanoate Synthases." Applied and Environmental Microbiology 70, no. 11 (2004): 6789–99. http://dx.doi.org/10.1128/aem.70.11.6789-6799.2004.

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ABSTRACT PHA synthase is a key enzyme involved in the biosynthesis of polyhydroxyalkanoates (PHAs). Using a combinatorial genetic strategy to create unique chimeric class II PHA synthases, we have obtained a number of novel chimeras which display improved catalytic properties. To engineer the chimeric PHA synthases, we constructed a synthetic phaC gene from Pseudomonas oleovorans (phaC1 Po ) that was devoid of an internal 540-bp fragment. Randomly amplified PCR products (created with primers based on conserved phaC sequences flanking the deleted internal fragment) were generated using genomic
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Han, Jing, Jing Hou, Hailong Liu, et al. "Wide Distribution among Halophilic Archaea of a Novel Polyhydroxyalkanoate Synthase Subtype with Homology to Bacterial Type III Synthases." Applied and Environmental Microbiology 76, no. 23 (2010): 7811–19. http://dx.doi.org/10.1128/aem.01117-10.

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ABSTRACT Polyhydroxyalkanoates (PHAs) are accumulated as intracellular carbon and energy storage polymers by various bacteria and a few haloarchaea. In this study, 28 strains belonging to 15 genera in the family Halobacteriaceae were investigated with respect to their ability to synthesize PHAs and the types of their PHA synthases. Fermentation results showed that 18 strains from 12 genera could synthesize polyhydroxybutyrate (PHB) or poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV). For most of these haloarchaea, selected regions of the phaE and phaC genes encoding PHA synthases (type III)
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Hai, Tran, Daniela Lange, Ralf Rabus, and Alexander Steinbüchel. "Polyhydroxyalkanoate (PHA) Accumulation in Sulfate-Reducing Bacteria and Identification of a Class III PHA Synthase (PhaEC) in Desulfococcus multivorans." Applied and Environmental Microbiology 70, no. 8 (2004): 4440–48. http://dx.doi.org/10.1128/aem.70.8.4440-4448.2004.

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ABSTRACT Seven strains of sulfate-reducing bacteria (SRB) were tested for the accumulation of polyhydroxyalkanoates (PHAs). During growth with benzoate Desulfonema magnum accumulated large amounts of poly(3-hydroxybutyrate) [poly(3HB)]. Desulfosarcina variabilis (during growth with benzoate), Desulfobotulus sapovorans (during growth with caproate), and Desulfobacterium autotrophicum (during growth with caproate) accumulated poly(3HB) that accounted for 20 to 43% of cell dry matter. Desulfobotulus sapovorans and Desulfobacterium autotrophicum also synthesized copolyesters consisting of 3-hydrox
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Lu, Qiuhe, Jing Han, Ligang Zhou, Jian Zhou, and Hua Xiang. "Genetic and Biochemical Characterization of the Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) Synthase in Haloferax mediterranei." Journal of Bacteriology 190, no. 12 (2008): 4173–80. http://dx.doi.org/10.1128/jb.00134-08.

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ABSTRACT The haloarchaeon Haloferax mediterranei has shown promise for the economical production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV), a desirable bioplastic. However, little is known at present about the genes involved in PHBV synthesis in the domain Archaea. In this study, we cloned the gene cluster (phaEC Hme) encoding a polyhydroxyalkanoate (PHA) synthase in H. mediterranei CGMCC 1.2087 via thermal asymmetric interlaced PCR. Western blotting revealed that the phaE Hme and phaC Hme genes were constitutively expressed, and both the PhaEHme and PhaCHme proteins were strongly
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Hyakutake, Manami, Satoshi Tomizawa, Kouhei Mizuno, Hideki Abe, and Takeharu Tsuge. "Alcoholytic Cleavage of Polyhydroxyalkanoate Chains by Class IV Synthases Induced by Endogenous and Exogenous Ethanol." Applied and Environmental Microbiology 80, no. 4 (2013): 1421–29. http://dx.doi.org/10.1128/aem.03576-13.

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ABSTRACTPolyhydroxyalkanoate (PHA)-producingBacillusstrains express class IV PHA synthase, which is composed of the subunits PhaR and PhaC. RecombinantEscherichia coliexpressing PHA synthase fromBacillus cereusstrain YB-4 (PhaRCYB-4) showed an unusual reduction of the molecular weight of PHA produced during the stationary phase of growth. Nuclear magnetic resonance analysis of the low-molecular-weight PHA revealed that its carboxy end structure was capped by ethanol, suggesting that the molecular weight reduction was the result of alcoholytic cleavage of PHA chains by PhaRCYB-4induced by endog
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Bhubalan, Kesaven, Jo-Ann Chuah, Fumi Shozui, et al. "Characterization of the Highly Active Polyhydroxyalkanoate Synthase of Chromobacterium sp. Strain USM2." Applied and Environmental Microbiology 77, no. 9 (2011): 2926–33. http://dx.doi.org/10.1128/aem.01997-10.

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ABSTRACTThe synthesis of bacterial polyhydroxyalkanoates (PHA) is very much dependent on the expression and activity of a key enzyme, PHA synthase (PhaC). Many efforts are being pursued to enhance the activity and broaden the substrate specificity of PhaC. Here, we report the identification of a highly active wild-type PhaC belonging to the recently isolatedChromobacteriumsp. USM2 (PhaCCs). PhaCCsshowed the ability to utilize 3-hydroxybutyrate (3HB), 3-hydroxyvalerate (3HV), and 3-hydroxyhexanoate (3HHx) monomers in PHA biosynthesis. Anin vitroassay of recombinant PhaCCsexpressed inEscherichia
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Satoh, Yasuharu, Norimasa Minamoto, Kenji Tajima, and Masanobu Munekata. "Polyhydroxyalkanoate synthase from Bacillus sp. INT005 is composed of PhaC and PhaR." Journal of Bioscience and Bioengineering 94, no. 4 (2002): 343–50. http://dx.doi.org/10.1016/s1389-1723(02)80175-x.

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Sharma, Parveen, Riffat Munir, Jocelyn Plouffe, Nidhi Shah, Teresa Kievit, and David Levin. "Polyhydroxyalkanoate (PHA) Polymer Accumulation and pha Gene Expression in Phenazine (phz-) and Pyrrolnitrin (prn-) Defective Mutants of Pseudomonas chlororaphis PA23." Polymers 10, no. 11 (2018): 1203. http://dx.doi.org/10.3390/polym10111203.

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Pseudomonas chlororaphis PA23 was isolated from the rhizosphere of soybeans and identified as a biocontrol bacterium against Sclerotinia sclerotiorum, a fungal plant pathogen. This bacterium produces a number of secondary metabolites, including phenazine-1-carboxylic acid, 2-hydroxyphenazine, pyrrolnitrin (PRN), hydrogen cyanide, proteases, lipases and siderophores. It also synthesizes and accumulates polyhydroxyalkanoate (PHA) polymers as carbon and energy storage compounds under nutrient-limited conditions. Pseudomonads like P. chlororaphis metabolize glucose via the Entner-Doudoroff and Pen
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Chek, Min Fey, Sun-Yong Kim, Tomoyuki Mori, Hua Tiang Tan, Kumar Sudesh, and Toshio Hakoshima. "Asymmetric Open-Closed Dimer Mechanism of Polyhydroxyalkanoate Synthase PhaC." iScience 23, no. 5 (2020): 101084. http://dx.doi.org/10.1016/j.isci.2020.101084.

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Nomura, Christopher T., Kazunori Taguchi, Seiichi Taguchi, and Yoshiharu Doi. "Coexpression of Genetically Engineered 3-Ketoacyl-ACP Synthase III (fabH) and Polyhydroxyalkanoate Synthase (phaC) Genes Leads to Short-Chain-Length-Medium-Chain-Length Polyhydroxyalkanoate Copolymer Production from Glucose in Escherichia coli JM109." Applied and Environmental Microbiology 70, no. 2 (2004): 999–1007. http://dx.doi.org/10.1128/aem.70.2.999-1007.2004.

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ABSTRACT Polyhydroxyalkanoates (PHAs) can be divided into three main types based on the sizes of the monomers incorporated into the polymer. Short-chain-length (SCL) PHAs consist of monomer units of C3 to C5, medium-chain-length (MCL) PHAs consist of monomer units of C6 to C14, and SCL-MCL PHAs consist of monomers ranging in size from C4 to C14. Although previous studies using recombinant Escherichia coli have shown that either SCL or MCL PHA polymers could be produced from glucose, this study presents the first evidence that an SCL-MCL PHA copolymer can be made from glucose in recombinant E.
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Dissertations / Theses on the topic "Polyhydroxyalkanoate synthase (phaC)"

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Costa, Tha??s Duarte. "Produ????o heter??loga de polihidroxialcanoato sintase (PhaC), biocatalisador da s??ntese de Poli (??cido l??tico) (PLA) em Komagataella phaffii." Universidade Cat??lica de Bras??lia, 2018. https://bdtd.ucb.br:8443/jspui/handle/tede/2406.

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Submitted by Sara Ribeiro (sara.ribeiro@ucb.br) on 2018-06-06T14:01:03Z No. of bitstreams: 1 ThaisDuarteCostaDissertacao2018.pdf: 3076865 bytes, checksum: 13af7d694f07d7e2dcc9281907285b62 (MD5)<br>Approved for entry into archive by Sara Ribeiro (sara.ribeiro@ucb.br) on 2018-06-06T14:01:33Z (GMT) No. of bitstreams: 1 ThaisDuarteCostaDissertacao2018.pdf: 3076865 bytes, checksum: 13af7d694f07d7e2dcc9281907285b62 (MD5)<br>Made available in DSpace on 2018-06-06T14:01:33Z (GMT). No. of bitstreams: 1 ThaisDuarteCostaDissertacao2018.pdf: 3076865 bytes, checksum: 13af7d694f07d7e2dcc9281907285b62 (M
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Kubáčková, Eliška. "Molekulárně biologická charakterizace vybraných producentů PHA." Master's thesis, Vysoké učení technické v Brně. Fakulta chemická, 2020. http://www.nusl.cz/ntk/nusl-414162.

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This diploma thesis focuses on the molecular characterization of selected PHA producers. Within this work, the PHA producing thermophilic isolates originating from the samples of activated sludge and compost were identified and characterized using molecular biological methods. By sequencing the 16S rRNA gene, the thermophilic isolates were identified and taxonomically classified into the Firmicutes bacterial phylum. In these bacterial isolates, the ability to produce PHA at the genotype level was determined by conventional PCR detection of the phaC gene encoding PHA synthase, which is a key en
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Vlasáková, Terézia. "Isolace, identifikace a charakterizace extremofilů schopných produkce PHA." Master's thesis, Vysoké učení technické v Brně. Fakulta chemická, 2018. http://www.nusl.cz/ntk/nusl-376875.

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This diploma thesis is focused on isolation and identification of thermophilic microorganisms capable of production of polyhydroxyalkanoates (PHA) in the sample of activated sludge from wastewater treatment. 6 culture samples were isolated from activated sludge by means of cultivation technics and methods of molecular biology. They were closer specified by comparing nucleotide sequences of 16S-rRNA gene and assigned to bacterial genus Anoxybacillus. The production of PHA by this genus was not reported in literature so far. Samples were confirmed to contain phaC gene that codes the enzyme PHA-s
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Gajdová, Barbora. "Identifikace PHA produkujících bakterií pomocí nástrojů molekulární biologie." Master's thesis, Vysoké učení technické v Brně. Fakulta chemická, 2017. http://www.nusl.cz/ntk/nusl-316230.

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This diploma thesis deals with identification of bacteria which are capable of producing polyhydroxyalkanoates (PHAs). Work included testing variety of genera including Pseudomonas, Lactobacillus, Bifidobacterium, thermophilic cultures and samples gathered from natural sources. Bacteria were investigated by molecular technique polymerase chain reaction – PCR. An amplification of the PHA synthase gene (phaC) was analyzed. In the first reaction phaC and 16S rRNA genes were tested at the same time. 16S rRNA gene is used as control for bacterial DNA and as an identification tool for natural source
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Dimitrov, Mauricio Rocha. "Construção de biblioteca metagenômica e prospecção de genes para a síntese de polihidroxalcanoatos." Universidade de São Paulo, 2009. http://www.teses.usp.br/teses/disponiveis/87/87131/tde-29042010-092836/.

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Os microrganismos constituem dois terços da diversidade biológica na Terra, no entanto, muitos deles não podem ser cultivados por técnicas tradicionais. Portanto, o acesso a esta diversidade tem sido feita através da utilização de técnicas independentes de cultivo. Diante deste panorama, a metagenômica apresenta-se como uma alternativa, pois dispensa a necessidade de cultivo. Tal técnica possibilita inclusive a identificação e utilização do potencial metabólico destes organismos para o desenvolvimento de novos processos e produtos. Os polihidroxialcanoatos (PHAs) são poliésteres bacterianos, a
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Caulkins, Juliana Carvalho de Arruda. "Identificação de genes envolvidos na síntese de polihidroxialcanoatos em Burkholderia cepacia linhagem IPT64." Universidade de São Paulo, 2008. http://www.teses.usp.br/teses/disponiveis/87/87131/tde-06082009-111247/.

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Os polihidroxialcanoatos (PHAs) são poliésteres acumulados por microrganismos como material de reserva. O conhecimento das vias bioquímicas e enzimas envolvidas na biossíntese e degradação dos PHAs é uma importante ferramenta para auxiliar na produção industrial. A linhagem Burkholderia cepacia IPT64 é capaz de acumular uma blenda composta de P(3HB) e P(3H4PE) a partir de sacarose. Este trabalho está focado em duas das principais enzimas envolvidas na biossíntese de PHAs: a b-cetotiolase (phaA) e a PHA sintase (phaC). A primeira está associada à especificidade pelo substrato, e a segunda é con
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Dartiailh, Christopher Neil Bergman. "Analyzing polyhydroxyalkanoate accumulation and identifying the PHA synthase gene, phaC, in Thermus sp." 2013. http://hdl.handle.net/1993/22013.

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Polyhydroxyalkanoate (PHA) is a cellular storage polymer with similar properties to some plastics when extracted from the cell and acts as a renewable and biodegradable plastic alternative. The objective of this research was to identify thermophilic PHA producing microorganisms and characterize their PHA accumulation, by which the process may become more competitive to current petroleum-based plastic production. This study characterizes growth and PHA production of Thermus thermophilus HB8 and three strains of T. filiformis (MOK, NGM and WRT), while simultaneously performing a genetic analysi
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Huang, Yan-Jia, and 黃筵嘉. "Screening polyhydroxyalkanoate producer with unique composition and analyzing substrate specificity of the PHA synthase." Thesis, 2005. http://ndltd.ncl.edu.tw/handle/92631143180947412232.

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碩士<br>國立臺灣大學<br>農業化學研究所<br>93<br>We screened the poly(3-hydroxyalkanoates) (PHAs) producers by cultivated in MSM containing 0.5 µg/ml Nile red from environment. Nine PHA producers had been isolated and verified for their PHA accumulation ability by flask fermentation and gas chromatography analysis. Among the wild type strains, TO7, PO6, PO21, TS18, and TF1-1 possess high PHA accumulation ability. The monomer compositions of PHAs produced by PO6 and PO21 possessed short-chain-length (scl) and medium- chain-length (mcl) monomers. The mcl monomer mol% of PHA produced by PO6 and PO21 could be reg
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Peters, Verena. "Polyester synthases and polyester granule assembly : a thesis presented to Massey University in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Microbiology." 2008. http://hdl.handle.net/10179/808.

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PHAs are a class of biopolymers consisting of (R)-3-hydroxy-fatty acids and are produced by the majority of eubacteria and some archaeal bacteria as carbon storage material. In general, PHA is synthesised when a carbon source is available in excess while another essential nutrient is limited. The key enzyme of PHA biosynthesis, the PHA synthase, catalyses the polymerisation of the substrate (R)-3-hydroxyacyl-CoA to PHA accompanied by the release of coenzyme A. PHA is stored intracellularly as inclusions, the so-called PHA granules. When the external carbon source becomes exhausted, bacteria ca
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Hsieh, Shu-Ping, and 謝舒萍. "The study of polyhydroxyalkanoate accumulation in marine bacteria Paracoccus stylophorae KTW-16 and the cloning of the PHA synthase gene." Thesis, 2012. http://ndltd.ncl.edu.tw/handle/44999840767248177832.

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碩士<br>國立高雄海洋科技大學<br>海洋生物技術研究所<br>100<br>The marine bacterium, Paracoccus stylophorae KTW-16, was isolated from the coral Stylophora pistillata, collected from the Kenting sea waters southern Taiwan. In the marine broth (MB) without extra carbon source, P. stylophorae KTW-16 was capable of synthesizing 80 mol% 3-hydroxybutyrate (3-HB) and 20 mol% 3-hydroxyvalerate (3-HV) of PHA copolymer. At 25oC, P. stylophorae KTW-16 accumulated 30% PHA with 75 mol% 3-HB and 25 mol% 3-HV. The 3-HV monomer composition of PHA was decreased with the increase of tryptone in MB. According to this result, the effec
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Book chapters on the topic "Polyhydroxyalkanoate synthase (phaC)"

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Malik, Javid A., and Monika Bhadauria. "Polyhydroxyalkanoates." In Handbook of Research on Environmental and Human Health Impacts of Plastic Pollution. IGI Global, 2020. http://dx.doi.org/10.4018/978-1-5225-9452-9.ch018.

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Human dependence on number of chemicals or chemical derivatives has increased alarmingly. Among the commodity chemicals, plastics are becoming independent for our modern lifestyle, as the usage of plastics is increasing worryingly. However, these synthetic plastics are extremely persistent in nature and accumulate in the environment, thereby leading to serious ecological problems. So, to build our economy sustainably, a need of replacement is necessary. Biomaterials in terms of bioplastics are an anticipated option, being synthesized and catabolized by different organisms with myriad biotechnological applications. Polyhydroxyalkanoates (PHAs) are among such biodegradable bioplastics, which are considered as an effective alternative for conventional plastics due to their similar mechanical properties of plastics. A range of microbes under different nutrient and environmental conditions produce PHAs significantly with the help of enzymes. PHA synthases encoded by phaC genes are the key enzymes that polymerize PHA monomers. Four major classes of PHA synthases can be distinguished based on their primary structures, as well as the number of subunits and substrate specificity. PHAs can also be produced from renewable feedstock under, unlike the petrochemically derived plastics that are produced by fractional distillation of depleting fossil fuels. Polyhydroxybutyrate (PHB) is the simplest yet best known polyester of PHAs, as the PHB derived bioplastics are heat tolerant, thus used to make heat tolerant and clear packaging film. They have several medical applications such as drug delivery, suture, scaffold and heart valves, tissue engineering, targeted drug delivery, and agricultural fields. Genetic modification (GM) may be necessary to achieve adequate yields. The selections of suitable bacterial strains, inexpensive carbon sources, efficient fermentation, and recovery processes are also some aspects important aspects taken into consideration for the commercialization of PHA. PHA producers have been reported to reside at various ecological niches with few among them also produce some byproducts like extracellular polymeric substances, rhamnolipids and biohydrogen gas. So, the metabolic engineering thereafter promises to bring a feasible solution for the production of “green plastic” in order to preserve petroleum reserves and diminish the escalating human and animal health concerns environmental implications.
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