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Relevant bibliographies by topics / Protein-protein

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Books
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Academic literature on the topic 'Protein-protein'

Author: Grafiati

Published: 4 June 2021

Last updated: 30 November 2024

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Journal articles on the topic "Protein-protein"

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Velesinović, Aleksandar, and Goran Nikolić. "Protein-protein interaction networks and protein-ligand docking: Contemporary insights and future perspectives." Acta Facultatis Medicae Naissensis 38, no. 1 (2021): 5–17. http://dx.doi.org/10.5937/afmnai38-28322.

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Traditional research means, such as in vitro and in vivo models, have consistently been used by scientists to test hypotheses in biochemistry. Computational (in silico) methods have been increasingly devised and applied to testing and hypothesis development in biochemistry over the last decade. The aim of in silico methods is to analyze the quantitative aspects of scientific (big) data, whether these are stored in databases for large data or generated with the use of sophisticated modeling and simulation tools; to gain a fundamental understanding of numerous biochemical processes related, in p

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Acuner Ozbabacan, S. E., H. B. Engin, A. Gursoy, and O. Keskin. "Transient protein-protein interactions." Protein Engineering Design and Selection 24, no. 9 (2011): 635–48. http://dx.doi.org/10.1093/protein/gzr025.

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Schaeffer, R. D., and V. Daggett. "Protein folds and protein folding." Protein Engineering Design and Selection 24, no. 1-2 (2010): 11–19. http://dx.doi.org/10.1093/protein/gzq096.

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Finkelstein, A. V. "Can protein unfolding simulate protein folding?" Protein Engineering Design and Selection 10, no. 8 (1997): 843–45. http://dx.doi.org/10.1093/protein/10.8.843.

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Vakser, IIya A. "Main-chain complementarity in protein-protein recognition." "Protein Engineering, Design and Selection" 9, no. 9 (1996): 741–44. http://dx.doi.org/10.1093/protein/9.9.741.

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Lei, H., and Y. Duan. "Incorporating intermolecular distance into protein-protein docking." Protein Engineering Design and Selection 17, no. 12 (2005): 837–45. http://dx.doi.org/10.1093/protein/gzh100.

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Abdullah, Syahid, Wisnu Ananta Kusuma, and Sony Hartono Wijaya. "Sequence-based prediction of protein-protein interaction using autocorrelation features and machine learning." Jurnal Teknologi dan Sistem Komputer 10, no. 1 (2022): 1–11. http://dx.doi.org/10.14710/jtsiskom.2021.13984.

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Protein-protein interaction (PPI) can define a protein's function by knowing the protein's position in a complex network of protein interactions. The number of PPIs that have been identified is relatively small. Therefore, several studies were conducted to predict PPI using protein sequence information. This research compares the performance of three autocorrelation methods: Moran, Geary, and Moreau-Broto, in extracting protein sequence features to predict PPI. The results of the three extractions are then applied to three machine learning algorithms, namely k-Nearest Neighbor (KNN), Random Fo

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Diansyah, Mohammad Romano, Wisnu Ananta Kusuma, and Annisa Annisa. "Identification of significant protein in protein-protein interaction of Alzheimer disease using top-k representative skyline query." Jurnal Teknologi dan Sistem Komputer 9, no. 3 (2021): 126–32. http://dx.doi.org/10.14710/jtsiskom.2021.13985.

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Alzheimer's disease is the most common neurodegenerative disease. This study aims to analyze protein-protein interaction (PPI) to provide a better understanding of multifactorial neurodegenerative diseases and can be used to find proteins that have a significant role in Alzheimer's disease. PPI data were obtained from experimental and computational predictions and analyzed using centrality measures. The Top-k RSP method was applied to find significant proteins in PPI networks using the dominance rule. The method was applied to the PPI data with the interaction sources from the experimental and

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Leatherbarrow, Robin J., and Alan R. Fersht. "Protein engineering." "Protein Engineering, Design and Selection" 1, no. 1 (1986): 7–16. http://dx.doi.org/10.1093/protein/1.1.7.

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Dill, Ken A. "Protein surgery." "Protein Engineering, Design and Selection" 1, no. 5 (1987): 369–71. http://dx.doi.org/10.1093/protein/1.5.369.

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Dissertations / Theses on the topic "Protein-protein"

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Jones, Susan. "Protein-protein interactions." Thesis, University College London (University of London), 1996. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.338952.

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Cooper, Simon T. "PAX6 protein-protein interactions." Thesis, University of Edinburgh, 2005. http://hdl.handle.net/1842/29070.

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The gene <i>PAX6</i> is located on chromosome 11 (11p13) and encodes a transcription factor (PAX6) that is expressed early in development. The PAX6 protein is expressed in the developing eye, regions of the brain, central nervous system (CNS), nasal epithelium and pancreas. PAX6 is best known for its role eye development with heterozygous mutations causing congenital ocular malformations. However, it must be remembered that PAX6 has multiple functions in the brain including specification of neuronal subtypes and axon guidance. There is growing understanding of the role of PAX6 as a transcripti

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Braute, Petter, and Jorg Eliassen Rødsjø. "Protein function prediction using annotated protein-protein interaction networks." Thesis, Norwegian University of Science and Technology, Department of Computer and Information Science, 2005. http://urn.kb.se/resolve?urn=urn:nbn:no:ntnu:diva-9177.

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Govers-Riemslag, Josepha Wilhelmina Philomena. "Protein-protein and protein-membrane interactions in prothrombin activation." Maastricht : Maastricht : Rijksuniversiteit Limburg ; University Library, Maastricht University [Host], 1994. http://arno.unimaas.nl/show.cgi?fid=6949.

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Lendel, Christofer. "Molecular principles of protein stability and protein-protein interactions." Doctoral thesis, Stockholm, 2005. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-480.

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Kneissl, Sabine. "Photocontrol of protein-protein and protein-nucleic acid interactions." Thesis, Cardiff University, 2009. http://orca.cf.ac.uk/54835/.

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Proteins often depend on a-helices for binding to other biomacromolecules. Reversible control of a-helix stability was accomplished in previous studies by incorporating a photoisomerisable azobenzene cross-linker into peptides, subsequently enabling the optical control of DNA-protein interactions. This approach was extended in this study to include protein-protein and protein-RNA interactions. One of the primary regulatory components in apoptosis signalling is the antiapoptotic protein Bcl-xL which interacts with the a-helical BH3 domain of the Bak protein. The Rev/RRE interaction is crucially

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Moont, Gidon. "Computational modelling of protein/protein and protein/DNA docking." Thesis, University College London (University of London), 2005. http://discovery.ucl.ac.uk/1445703/.

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The docking problem is to start with unbound conformations for the components of a complex, and computationally model a near-native structure for the complex. This thesis describes work in developing computer programs to tackle both protein/protein and protein/DNA docking. Empirical pair potential functions are generated from datasets of residue/residue interactions. A scoring function was parameterised and then used to screen possible complexes, generated by the global search computer algorithm FTDOCK using shape complementarity and electrostatics, for 9 systems. A correct docking (RMSD < 2.5

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Chen, Dan. "Regulation of protein kinase C by protein-protein interactions /." Diss., Connect to a 24 p. preview or request complete full text in PDF format. Access restricted to UC campuses, 2003. http://wwwlib.umi.com/cr/ucsd/fullcit?p3112821.

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Ginn, C. L. "Protein PEGylation on protein folding." Thesis, University College London (University of London), 2013. http://discovery.ucl.ac.uk/1403227/.

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E.coli is one of the most widely utilised hosts for protein expression due to its rapid growth, low production costs and high product yields. Often proteins are deposited as insoluble inclusion bodies that later require refolding to achieve biological activity. As a result of misfolding and aggregation for many proteins refolding is the yield limiting step in their production. Relevant therapeutic proteins obtained from E.coli include the α-helical barrel proteins (e.g. interferon-α2). Many proteins derived from E.coli are further modified after refolding by the covalent conjugation of poly(et

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McDowall, Mark. "Human protein-protein interaction prediction." Thesis, University of Dundee, 2011. https://discovery.dundee.ac.uk/en/studentTheses/697e465a-edbd-41d2-acda-5910a49e4157.

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Protein-protein interactions are essential for the survival of all living cells, allowing for processes such as cell signalling, metabolism and cell division to occur. Yet in humans there are only >38k annotated interactions of an interactome estimated to range between 150k to 600k interactions and out of a potential 300M protein pairs.Experimental methods to define the human interactome generate high quality results, but are expensive and slow. Computational methods play an important role to fill the gap.To further this goal, the prediction of human protein-protein interactions was investi

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Books on the topic "Protein-protein"

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Helmsen, Sabine. Protein-Ligand-, Protein-Inhibitor- und Protein-Protein-Wechselwirkungen. Springer Fachmedien Wiesbaden, 2020. http://dx.doi.org/10.1007/978-3-658-30151-4.

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Fu, Haian. Protein-Protein Interactions. Humana Press, 2004. http://dx.doi.org/10.1385/1592597629.

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Poluri, Krishna Mohan, Khushboo Gulati, and Sharanya Sarkar. Protein-Protein Interactions. Springer Singapore, 2021. http://dx.doi.org/10.1007/978-981-16-1594-8.

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Meyerkord, Cheryl L., and Haian Fu, eds. Protein-Protein Interactions. Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2425-7.

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Wendt, Michael D., ed. Protein-Protein Interactions. Springer Berlin Heidelberg, 2012. http://dx.doi.org/10.1007/978-3-642-28965-1.

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Werther, Meike, and Harald Seitz, eds. Protein – Protein Interaction. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/978-3-540-68820-4.

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Colin, Kleanthous, ed. Protein-protein recognition. Oxford University Press, 2000.

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Poluri, Krishna Mohan, Khushboo Gulati, Deepak Kumar Tripathi, and Nupur Nagar. Protein-Protein Interactions. Springer Nature Singapore, 2023. http://dx.doi.org/10.1007/978-981-99-2423-3.

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Kaczor, Agnieszka A., ed. Protein-Protein Docking. Springer US, 2024. http://dx.doi.org/10.1007/978-1-0716-3985-6.

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Mukhtar, Shahid, ed. Protein-Protein Interactions. Springer US, 2023. http://dx.doi.org/10.1007/978-1-0716-3327-4.

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Book chapters on the topic "Protein-protein"

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Martin, Shawn, W. Michael Brown, and Jean-Loup Faulon. "Using Product Kernels to Predict Protein Interactions." In Protein – Protein Interaction. Springer Berlin Heidelberg, 2007. http://dx.doi.org/10.1007/10_2007_084.

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Pitre, Sylvain, Md Alamgir, James R. Green, Michel Dumontier, Frank Dehne, and Ashkan Golshani. "Computational Methods For Predicting Protein–Protein Interactions." In Protein – Protein Interaction. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/10_2007_089.

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Chan, Catherine S., Tara M. L. Winstone, and Raymond J. Turner. "Investigating Protein–Protein Interactions by Far-Westerns." In Protein – Protein Interaction. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/10_2007_090.

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Abu-Farha, Mohamed, Fred Elisma, and Daniel Figeys. "Identification of Protein–Protein Interactions by Mass Spectrometry Coupled Techniques." In Protein – Protein Interaction. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/10_2007_091.

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Guan, Hongtao, and Endre Kiss-Toth. "Advanced Technologies for Studies on Protein Interactomes." In Protein – Protein Interaction. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/10_2007_092.

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Shin, Sung-Young, Sang-Mok Choo, Sun-Hee Woo, and Kwang-Hyun Cho. "Cardiac Systems Biology and Parameter Sensitivity Analysis: Intracellular Ca2+ Regulatory Mechanisms in Mouse Ventricular Myocytes." In Protein – Protein Interaction. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/10_2007_093.

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Beutling, Ulrike, Kai Städing, Theresia Stradal, and Ronald Frank. "Large-Scale Analysis of Protein–Protein Interactions Using Cellulose-Bound Peptide Arrays." In Protein – Protein Interaction. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/10_2008_096.

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Zhu, Yonggang, and Barbara E. Power. "Lab-on-a-chip in Vitro Compartmentalization Technologies for Protein Studies." In Protein – Protein Interaction. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/10_2008_098.

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Korf, Ulrike, Frauke Henjes, Christian Schmidt, et al. "Antibody Microarrays as an Experimental Platform for the Analysis of Signal Transduction Networks." In Protein – Protein Interaction. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/10_2008_101.

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Chappell, Thomas G., and Phillip N. Gray. "Protein Interactions: Analysis Using Allele Libraries." In Protein – Protein Interaction. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/10_2008_102.

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Conference papers on the topic "Protein-protein"

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HSU, WEI-LUN, CHRISTOPHER OLDFIELD, JINGWEI MENG, et al. "INTRINSIC PROTEIN DISORDER AND PROTEIN-PROTEIN INTERACTIONS." In Proceedings of the Pacific Symposium. WORLD SCIENTIFIC, 2011. http://dx.doi.org/10.1142/9789814366496_0012.

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Sun, Dengdi, and Maolin Hu. "Determining Protein Function by Protein-Protein Interaction Network." In 2007 1st International Conference on Bioinformatics and Biomedical Engineering. IEEE, 2007. http://dx.doi.org/10.1109/icbbe.2007.12.

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Chua, Hon Nian, Kang Ning, Wing-Kin Sung, Hon Wai Leong, and Limsoon Wong. "USING INDIRECT PROTEIN-PROTEIN INTERACTIONS FOR PROTEIN COMPLEX PREDICTION." In Proceedings of the CSB 2007 Conference. PUBLISHED BY IMPERIAL COLLEGE PRESS AND DISTRIBUTED BY WORLD SCIENTIFIC PUBLISHING CO., 2007. http://dx.doi.org/10.1142/9781860948732_0014.

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Doong, Shing, and Shu-Fen Hong. "Protein-Protein Interaction Document Mining." In 9th Joint Conference on Information Sciences. Atlantis Press, 2006. http://dx.doi.org/10.2991/jcis.2006.250.

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Hashmi, Irina, and Amarda Shehu. "Informatics-driven Protein-protein Docking." In BCB'13: ACM-BCB2013. ACM, 2013. http://dx.doi.org/10.1145/2506583.2506709.

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Xue, Li C., Rafael A. Jordan, Yasser El-Manzalawy, Drena Dobbs, and Vasant Honavar. "Ranking docked models of protein-protein complexes using predicted partner-specific protein-protein interfaces." In the 2nd ACM Conference. ACM Press, 2011. http://dx.doi.org/10.1145/2147805.2147866.

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Maruyama, Osamu, and Yuki Kuwahara. "RocSampler: Regularizing overlapping protein complexes in protein-protein interaction networks." In 2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS). IEEE, 2016. http://dx.doi.org/10.1109/iccabs.2016.7802774.

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Wu, Feihong, Fadi Towfic, Drena Dobbs, and Vasant Honavar. "Analysis of Protein Protein Dimeric Interfaces." In 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007). IEEE, 2007. http://dx.doi.org/10.1109/bibm.2007.60.

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Shatnawi, Maad. "Protein-Protein Interaction Prediction: Recent Advances." In 2017 28th International Workshop on Database and Expert Systems Applications (DEXA). IEEE, 2017. http://dx.doi.org/10.1109/dexa.2017.30.

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Xu, Liangliang, and Fei Zhu. "Protein protein interaction visualization using VisANT." In 2011 International Conference on Computer Science and Service System (CSSS). IEEE, 2011. http://dx.doi.org/10.1109/csss.2011.5973926.

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Reports on the topic "Protein-protein"

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Noy, A., T. Sulchek, and R. Friddle. Direct Probing of Protein-Protein Interactions. Office of Scientific and Technical Information (OSTI), 2005. http://dx.doi.org/10.2172/15015174.

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Blackwell, T. K. C-Myc Protein-Protein and Protein-DNA Interactions: Targets for Therapeutic Intervention. Defense Technical Information Center, 1998. http://dx.doi.org/10.21236/ada371161.

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Blackwell, T. K. C-Myc Protein-Protein and Protein-DNA Interactions: Targets for Therapeutic Intervention. Defense Technical Information Center, 1997. http://dx.doi.org/10.21236/ada344737.

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Blackwell, T. K. C-MYC Protein-Protein and Protein-DNA Interactions: Targets for Therapeutic Intervention. Defense Technical Information Center, 1999. http://dx.doi.org/10.21236/ada381686.

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Mural, R. (Protein engineering). Office of Scientific and Technical Information (OSTI), 1987. http://dx.doi.org/10.2172/5608092.

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Bobe, Gerd, A. E. Gene Freeman, Gary L. Lindberg, and Donald C. Beitz. Milk Protein Genotypes Explain Variation of Milk Protein Composition. Iowa State University, 2004. http://dx.doi.org/10.31274/ans_air-180814-614.

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Fidelis, K., A. Adzhubej, A. Kryshtafovych, and P. Daniluk. Protein Model Database. Office of Scientific and Technical Information (OSTI), 2005. http://dx.doi.org/10.2172/15014781.

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Dill, Ken A. Inverse Protein Folding. Defense Technical Information Center, 1998. http://dx.doi.org/10.21236/ada361002.

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Faulon, Jean-Loup Michel, and Grant S. Heffelfinger. Shotgun protein sequencing. Office of Scientific and Technical Information (OSTI), 2009. http://dx.doi.org/10.2172/959081.

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Tirrell, David A. Protein-Based Polymers. Defense Technical Information Center, 1995. http://dx.doi.org/10.21236/ada302424.

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